The crystal structure of choline kinase reveals a eukaryotic protein kinase fold

Structure

Volumn 11, Issue 6, 2003, Pages 703-713

  Peisach, Daniel ^a   Gee, Patricia ^a   Kent, Claudia ^a   Xu, Zhaohui ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; CHOLINE KINASE; PHOSPHOTRANSFERASE; PROTEIN KINASE;

AMINO ACID SEQUENCE; ARTICLE; CAENORHABDITIS ELEGANS; CATALYSIS; CRYSTAL STRUCTURE; EUKARYOTE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FOLDING;

CAENORHABDITIS; CAENORHABDITIS ELEGANS; EUKARYOTA; NEMATODA;

EID: 0142039652     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(03)00094-7     Document Type: Article

References (51)

1. Al-Malki A., Morby A., Harwood J.L. Pea choline kinase. purification, properties and isolation of a cDNA Biochem. Soc. Trans. 28:2000;721-723.
2. Ansell G.B., Spanner S.G. The inhibition of brain choline kinase by hemicholinium-3. J. Neurochem. 22:1974;1153-1155.
3. Aoyama C., Nakashima K., Matsui M., Ishidate K. Complementary DNA sequence for a 42 kDa rat kidney choline/ethanolamine kinase. Biochim. Biophys. Acta. 1390:1998;1-7.
4. Aoyama C., Yamazaki N., Terada H., Ishidate K. Structure and characterization of the genes for murine choline/ethanolamine kinase isozymes alpha and beta. J. Lipid Res. 41:2000;452-464.
5. Bean B., Tomasz A. Choline metabolism in pneumococci. J. Bacteriol. 130:1977;571-574.
6. Brenner S. Phosphotransferase sequence homology. Nature. 329:1987;21.
7. Brünger A.T., Adams P.D., Clore G.M., Delano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.-S., Kuszewski J., Nilges N., Pannu N.S.et al. Crystallography and NMR system. a new software suite for macromolecular structure determination Acta Crystallogr. D Biol. Crystallogr. 54:1998;905-921.
8. Burk D.L., Hon W.C., Leung A.K., Berghuis A.M. Structural analyses of nucleotide binding to an aminoglycoside phosphotransferase. Biochemistry. 40:2001;8756-8764.
9. CCP4 The CCP4 (Collaborative Computational Project 4) suite. programs for protein crystallography Acta Crystallogr. D Biol. Crystallogr. 50:1994;760-763.
10. Cuadrado A., Carnero A., Dolfi F., Jimenez B., Lacal J.C. Phosphorylcholine. a novel second messenger essential for mitogenic activity of growth factors Oncogene. 8:1993;2959-2968.
11. Davis G.D., Elisee C., Newham D.M., Harrison R.G. New fusion protein systems designed to give soluble expression in Escherichia coli. Biotechnol. Bioeng. 65:1999;382-388.
12. Exton J.H. Phospholipase D. Ann. NY Acad. Sci. 905:2000;61-68.
13. Favelyukis S., Till J.H., Hubbard S.R., Miller W.T. Structure and autoregulation of the insulin-like growth factor 1 receptor kinase. Nat. Struct. Biol. 8:2001;1058-1063.
14. de la Fortelle E., Bricogne G. Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol. 276:1998;472-494.
15. Gee P., Kent C. Multiple isoforms of choline kinase from Caenorhabditis elegans. cloning, expression, purification, and characterization Biochim. Biophys. Acta. 1648:2003;33-42.
16. Hendrickson W.A., Ogata C.M. Phase determination from multiwavelength anomalous diffraction measurements. Methods Enzymol. 276:1997;494-523.
17. Hernandez-Alcoceba R., Saniger L., Campos J., Nunez M.C., Khaless F., Gallo M.A., Espinosa A., Lacal J.C. Choline kinase inhibitors as a novel approach for antiproliferative drug design. Oncogene. 15:1997;2289-2301.
18. Higgins D., Thompson J., Gibson T., Thompson J.D., Higgins D.G., Gibson T.J. Clustal w. improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22:1994;4673-4680.
19. Holm L., Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233:1993;123-138.
20. Hon W.C., McKay G.A., Thompson P.R., Sweet R.M., Yang D.S., Wright G.D., Berghuis A.M. Structure of an enzyme required for aminoglycoside antibiotic resistance reveals homology to eukaryotic protein kinases. Cell. 89:1997;887-895.
21. Hosaka K., Kodaki T., Yamashita S. Cloning and characterization of the yeast CKI gene encoding choline kinase and its expression in Escherichia coli. J. Biol. Chem. 264:1989;2053-2059.
22. Ishidate K., Kihara M., Tadokoro K., Nakazawa Y. Induction of choline kinase by polycyclic aromatic hydrocarbons in rat liver. I. A comparison of choline kinases from normal and 3-methylcholanthrene-induced rat liver cytosol. Biochim. Biophys. Acta. 713:1982;94-102.
23. Ishidate K., Nakagomi K., Nakazawa Y. Complete purification of choline kinase from rat kidney and preparation of rabbit antibody against rat kidney choline kinase. J. Biol. Chem. 259:1984;14706-14710.
24. Ishidate K., Iida K., Tadokoro K., Nakazawa Y. Evidence for the existence of multiple forms of choline (ethanolamine) kinase in rat tissues. Biochim. Biophys. Acta. 833:1985;1-8.
25. Janin J., Chothia C. The structure of protein-protein recognition sites. J. Biol. Chem. 265:1990;16027-16030.
26. Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A. 47:1991;110-119.
27. Kent C. Regulation of phosphatidylcholine biosynthesis. Prog. Lipid Res. 29:1990;87-105.
28. Kim K.H., Voelker D.R., Flocco M.T., Carman G.M. Expression, purification, and characterization of choline kinase, product of the CKI gene from Saccharomyces cerevisiae. J. Biol. Chem. 273:1998;6844-6852.
29. Kinoshita K., Sadanami K., Kidera A., Go N. Structural motif of phosphate-binding site common to various protein superfamilies. all-against-all structural comparison of protein-mononucleotide complexes Protein Eng. 12:1999;11-14.
30. Knighton D.R., Zheng J.H., Ten Eyck L.F., Ashford V.A., Xuong N.H., Taylor S.S., Sowadski J.M. Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science. 253:1991;407-414.
31. Kraulis P.J. Molscript. a program to reproduce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24:1991;946-950.
32. Lawrie A.M., Noble M.E., Tunnah P., Brown N.R., Johnson L.N., Endicott J.A. Protein kinase inhibition by staurosporine revealed in details of the molecular interaction with CDK2. Nat. Struct. Biol. 4:1997;796-801.
33. Longenecker K.L., Roach P.J., Hurley T.D. Three-dimensional structure of mammalian casein kinase I. molecular basis for phosphate recognition J. Mol. Biol. 257:1996;618-631.
34. Lykidis A., Wang J., Karim M.A., Jackowski S. Overexpression of a mammalian ethanolamine-specific kinase accelerates the CDP-ethanolamine pathway. J. Biol. Chem. 276:2001;2174-2179.
35. McKay G.A., Wright G.D. Kinetic mechanism of aminoglycoside phosphotransferase type IIIa. Evidence for a Theorell-Chance mechanism. J. Biol. Chem. 270:1995;24686-24692.
36. Monks D.E., Goode J.H., Dewey R.E. Characterization of soybean choline kinase cDNAs and their expression in yeast and Escherichia coli. Plant Physiol. 110:1996;1197-1205.
37. Nicholls A., Sharp K.A., Honig B. Protein folding and association. insights from the interfacial and thermodynamic properties of hydrocarbons Proteins Struct. Funct. Genet. 11:1991;281.
38. Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326.
39. Pavlidis P., Ramaswami M., Tanouye M.A. The Drosophila easily shocked gene. a mutation in a phospholipid synthetic pathway causes seizure, neuronal failure, and paralysis Cell. 79:1994;23-33.
40. Porter T.J., Kent C. Purification and characterization of choline/ethanolamine kinase from rat liver. J. Biol. Chem. 265:1990;414-422.
41. Poxton I.R., Leak D.J. The biosynthesis of a choline nucleotide by a cell-free extract from Streptococcus pneumoniae. J. Gen. Microbiol. 100:1977;23-29.
42. Read R.J. Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallogr. A42:1986;140-149.
43. Tuomanen E. Molecular and cellular biology of pneumococcal infection. Curr. Opin. Microbiol. 2:1999;35-39.
44. Uchida T. Regulation of choline kinase R. analyses of alternatively spliced choline kinases and the promoter region J. Biochem. 116:1994;508-518.
45. Uchida T. A novel high-molecular mass mammalian ethanolamine kinase. Biochim. Biophys. Acta. 1349:1997;13-24.
46. Uchida T., Yamashita S. Purification and properties of choline kinase from rat brain. Biochim. Biophys. Acta. 1043:1990;281-288.
47. Uchida T., Yamashita S. Molecular cloning, characterization, and expression in Escherichia coli of a cDNA encoding mammalian choline kinase. J. Biol. Chem. 267:1992;10156-10162.
48. Weber C.H., Park Y.S., Sanker S., Kent C., Ludwig M.L. A prototypical cytidylyltransferase. CTP:glycerol-3-phosphate cytidylyltransferase from bacillus subtilis Struct. Fold. Des. 7:1999;1113-1124.
49. Whitehouse S., Feramisco J.R., Casnellie J.E., Krebs E.G., Walsh D.A. Studies on the kinetic mechanism of the catalytic subunit of the cAMP-dependent protein kinase. J. Biol. Chem. 258:1983;3693-3701.
50. Wittenberg J., Kornberg A. Choline phosphokinase. J. Biol. Chem. 202:1953;431-444.
51. Yu Y., Sreenivas A., Ostrander D.B., Carman G.M. Phosphorylation of Saccharomyces cerevisiae choline kinase on Ser30 and Ser85 by protein kinase A regulates phosphatidylcholine synthesis by the CDP-choline pathway. J. Biol. Chem. 277:2002;34978-34986.