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Volumn 13, Issue 9, 2003, Pages 2112-2117

Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ALZHEIMER DISEASE; ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; CYSTIC FIBROSIS; GENE CONSTRUCT; GENE LINKAGE DISEQUILIBRIUM; GENE LOCATION; GENE MAPPING; GENE MUTATION; HAPLOTYPE; HUMAN; PRIORITY JOURNAL; PROBABILITY; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL;

EID: 0141853960     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.586803     Document Type: Article
Times cited : (29)

References (27)
  • 1
    • 0034017850 scopus 로고    scopus 로고
    • GOLD-graphical overview of linkage disequilibrium
    • Abecasis, G.R. and Cookson, W.O. 2000. GOLD-graphical overview of linkage disequilibrium. Bioinformatics 16: 182-183.
    • (2000) Bioinformatics , vol.16 , pp. 182-183
    • Abecasis, G.R.1    Cookson, W.O.2
  • 2
    • 0034981387 scopus 로고    scopus 로고
    • The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures
    • Akey, J.M., Zhang, K., Xiong, M., Doris, P., and Jin, L. 2001. The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures. Am. J. Hum. Genet. 68: 1447-1456.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 1447-1456
    • Akey, J.M.1    Zhang, K.2    Xiong, M.3    Doris, P.4    Jin, L.5
  • 3
    • 0031823031 scopus 로고    scopus 로고
    • Fine genetic mapping using haplotype analysis and the missing data problem
    • Chiano, M.N. and Clayton, D.G. 1998. Fine genetic mapping using haplotype analysis and the missing data problem. Ann. Hum. Genet. 62: 55-60.
    • (1998) Ann. Hum. Genet. , vol.62 , pp. 55-60
    • Chiano, M.N.1    Clayton, D.G.2
  • 4
    • 0025269067 scopus 로고
    • Inference of haplotypes from PCR-amplified samples of diploid populations
    • Clark, A.G. 1990. Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol. 7: 111-122.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 111-122
    • Clark, A.G.1
  • 5
    • 0034924367 scopus 로고    scopus 로고
    • Statistical estimation and pedigree analysis of CCR2-CCR5 haplotypes
    • Clark, V.J., Metheny, N., Dean, M., and Peterson, R.J. 2001. Statistical estimation and pedigree analysis of CCR2-CCR5 haplotypes. Hum. Genet. 108: 484-493.
    • (2001) Hum. Genet. , vol.108 , pp. 484-493
    • Clark, V.J.1    Metheny, N.2    Dean, M.3    Peterson, R.J.4
  • 6
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier, L. and Slatkin, M. 1995. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 12: 921-927.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 7
    • 0033794938 scopus 로고    scopus 로고
    • Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
    • Fallin, D. and Schork, N.J. 2000. Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data. Am. J. Hum. Genet. 67: 947-959.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 947-959
    • Fallin, D.1    Schork, N.J.2
  • 8
    • 0035154452 scopus 로고    scopus 로고
    • Genetic analysis of case/control data using estimated haplotype frequencies: Application to APOE locus variation and Alzheimer's disease
    • Fallin, D., Cohen, A., Essioux, L., Chumakov, I., Blumenfeld, M., Cohen, D., and Schork, N.J. 2001. Genetic analysis of case/control data using estimated haplotype frequencies: Application to APOE locus variation and Alzheimer's disease. Genome Res. 11: 143-151.
    • (2001) Genome Res. , vol.11 , pp. 143-151
    • Fallin, D.1    Cohen, A.2    Essioux, L.3    Chumakov, I.4    Blumenfeld, M.5    Cohen, D.6    Schork, N.J.7
  • 9
    • 18444369013 scopus 로고    scopus 로고
    • The structure of haplotype blocks in the human genome
    • Gabriel, S.B., Schaffner, S.F., and Nguyen, H. 2002. The structure of haplotype blocks in the human genome. Science 296: 2225-2229.
    • (2002) Science , vol.296 , pp. 2225-2229
    • Gabriel, S.B.1    Schaffner, S.F.2    Nguyen, H.3
  • 11
    • 0028799668 scopus 로고
    • Arginine residues at codons 112 and 158 in the apolipoprotein E gene correspond to the ancestral state in humans
    • Hanlon, C.S. and Rubinsztein, D.C. 1995. Arginine residues at codons 112 and 158 in the apolipoprotein E gene correspond to the ancestral state in humans. Atherosclerosis 112: 85-90.
    • (1995) Atherosclerosis , vol.112 , pp. 85-90
    • Hanlon, C.S.1    Rubinsztein, D.C.2
  • 12
    • 0029372419 scopus 로고
    • HAPLO: A program using the EM algorithm to estimate the frequencies of multi-site haplotypes
    • Hawley, M.E. and Kidd, K.K. 1995. HAPLO: A program using the EM algorithm to estimate the frequencies of multi-site haplotypes. J. Hered. 86: 409-411.
    • (1995) J. Hered. , vol.86 , pp. 409-411
    • Hawley, M.E.1    Kidd, K.K.2
  • 13
    • 0032948850 scopus 로고    scopus 로고
    • Loss of information due to ambiguous haplotyping of SNPs
    • Hodge, S.E., Boehnke, M., and Spence, M.A. 1999. Loss of information due to ambiguous haplotyping of SNPs. Nat. Genet. 21: 360-361.
    • (1999) Nat. Genet. , vol.21 , pp. 360-361
    • Hodge, S.E.1    Boehnke, M.2    Spence, M.A.3
  • 14
    • 0033925616 scopus 로고    scopus 로고
    • A measure of phase ambiguity in pairs of SNPs in the presence of linkage disequilibrium
    • Hoh, J. and Hodge, S.E. 2000. A measure of phase ambiguity in pairs of SNPs in the presence of linkage disequilibrium. Hum. Hered. 50: 359-364.
    • (2000) Hum. Hered. , vol.50 , pp. 359-364
    • Hoh, J.1    Hodge, S.E.2
  • 15
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 16
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys, A.J., Kauppi, L., and Neumann, R. 2001. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
    • (2001) Nat. Genet. , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 18
    • 0034761849 scopus 로고    scopus 로고
    • Bayesian analysis of haplotypes for linkage disequilibrium mapping
    • Liu, J.S., Sabatti, C., Teng, J., Keats, B.J.B., and Risch, N. 2001. Bayesian analysis of haplotypes for linkage disequilibrium mapping. Genome Res. 11: 1716-1724.
    • (2001) Genome Res. , vol.11 , pp. 1716-1724
    • Liu, J.S.1    Sabatti, C.2    Teng, J.3    Keats, B.J.B.4    Risch, N.5
  • 19
    • 0028913523 scopus 로고
    • An EM algorithm and testing strategy for multiple-locus haplotypes
    • Long, J.C., Williams, R.C., and Urbanek, M. 1995. An EM algorithm and testing strategy for multiple-locus haplotypes. Am. J. Hum. Genet. 56: 799-810.
    • (1995) Am. J. Hum. Genet. , vol.56 , pp. 799-810
    • Long, J.C.1    Williams, R.C.2    Urbanek, M.3
  • 20
    • 0034575124 scopus 로고    scopus 로고
    • Apolipoprotein E: Far more than a lipid transport protein
    • Mahley, R.W. and Rall Jr., S.C. 2000. Apolipoprotein E: Far more than a lipid transport protein. Annu. Rev. Gen. Hum. Genet. 1: 507-537.
    • (2000) Annu. Rev. Gen. Hum. Genet. , vol.1 , pp. 507-537
    • Mahley, R.W.1    Rall S.C., Jr.2
  • 22
    • 0033358667 scopus 로고    scopus 로고
    • Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping
    • McPeek, M.S. and Strahs, A. 1999, Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping. Am. J. Hum. Genet. 65: 858-875.
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 858-875
    • McPeek, M.S.1    Strahs, A.2
  • 23
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • Morris, A.P., Whittaker, J.C., and Balding, D.J. 2002. Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am. J. Hum. Genet. 70: 686-707.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 686-707
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 24
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • Niu, T., Qin, Z.S., Xu, X., and Liu, J.S. 2002. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am. J. Hum. Genet. 70: 157-169.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 25
    • 0036844521 scopus 로고    scopus 로고
    • Partition-ligation EM algorithm for haplotype inference with single nucleotide polymorphisms
    • Qin, Z.S., Niu, T., and Liu, J.S. 2002. Partition-ligation EM algorithm for haplotype inference with single nucleotide polymorphisms. Am. J. Hum. Genet. 71: 1242-1247.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1242-1247
    • Qin, Z.S.1    Niu, T.2    Liu, J.S.3
  • 26
    • 0038240721 scopus 로고    scopus 로고
    • Causative and susceptibility genes for Alzheimer's disease: A review
    • Rocchi, A., Pellegrini, S., Siciliano, G., and Murri, L. 2003. Causative and susceptibility genes for Alzheimer's disease: A review. Brain Res Bull. 61: 1-24.
    • (2003) Brain Res Bull. , vol.61 , pp. 1-24
    • Rocchi, A.1    Pellegrini, S.2    Siciliano, G.3    Murri, L.4
  • 27
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens, M., Smith, N.J., and Donnelly, P. 2001. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.