Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana

Genetics

Volumn 165, Issue 1, 2003, Pages 353-365

  Ungerer, Mark C ^a   Halldorsdottir, Solveig S ^a   Purugganan, Michael D ^a   Mackay, Trudy F C ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; GENE MAPPING; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; PHENOTYPE; PHOTOPERIODICITY; PLANT; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS;

ARABIDOPSIS; CHROMOSOME MAPPING; EPISTASIS, GENETIC; FLOWERING TOPS; GENOTYPE; PHENOTYPE; PHOTOPERIOD; QUANTITATIVE TRAIT LOCI;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 0141455094     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (79)

1. ALONSO-BLANCO, C., A. J. M. PEFTERS, M. KOORNNEEF, C. LISTER, C. DEAN et al., 1998a Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. Plant J. 14: 259-271.
2. ALONSO-BLANCO, C., S. E.-D. EL-ASSAL, G. COUPLAND and M. KOORNNEEF, 1998b Analysis of natural allelic variation at flowering time loci in the Landsberg erecta and Cape Verde Islands ecotypes of Arabidopsis thaliana. Genetics 149: 749-764.
3. ALONSO-BLANCO, C., H. BLANKESTIJN-DE VRIES, C. J. HANHART and M. KOORNNEEF, 1999 Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 96: 4710-4717.
4. BASTEN, C.J., B. S. WEIR and Z-B. ZENG, 1994 Zmap - a QTL cartographer, pp. 65-66 in Proceedings of the 5th World Congress on Genetics Applied to Livestock Production: Computing Strategies and Software, Vol. 22, edited by C. SMITH, J. S. GAVORA, B. BENKEL, J. CHESNAIS, W. FAIRFULL et al. Organizing Committee, 5th World Congress on Genetics Applied to Livestock Production, Guelph, Ontario, Canada.
5. BASTEN, C. J., B. S. WEIR and Z-B. ZENG, 1999 QTL Cartographer, Version 1.13. Department of Statistics, North Carolina State University, Raleigh, NC.
6. BONSER, S. P., and L. W. AARSSEN, 2001 Allometry and plasticity of meristem allocation throughout development in Arabidopsis thaliana. J. Ecol. 89: 72-79.
7. BOREVITZ, J. O., J. N. MALOOF, J. LUTES, T. DABI, J. L. REDBERN et al., 2002 Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics 160: 683-696.
8. BRADSHAW, A. D., 1965 Evolutionary significance of phenotypic plasticity in plants. Adv. Genet. 13: 115-155.
9. BRONMARK, C., and J. G. MINER, 1992 Predator-induced phenotypical change in body morphology in crucian carp. Science 258: 1348-1350.
10. CHURCHILL, C., A., and R. W. DOERGE, 1994 Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
11. CLARKE, J. H., R. MITHEN, J. K. M. BROWN and C. DEAN, 1995 QTL analysis of flowering time in Arabidopsis thaliana. Mol. Gen. Genet. 248: 278-286.
12. DE JONG, G., 1990 Quantitative genetics of reaction norms. J. Evol. Biol. 3: 447-468.
13. DE JONG, G., 1995 Phenotypic plasticity as a product of selection in a variable environment. Am. Nat. 145: 493-512.
14. DIGGLE, P. K., 1999 Heteroblasty and the evolution of flowering phenologies. Int. J. Plant Sci. 160 (Suppl): 123-124.
15. DOERGE, R. W., and G. A. CHURCHILL, 1996 Permutation tests for multiple loci affecting a quantitative character. Genetics 142: 285-294.
16. DORN, L. A., E. H. PYLE and J. SCHMITT, 2000 Plasticity to light cues and resources in Arabidopsis thaliana: testing for adaptive value and costs. Evolution 54: 1982-1994.
17. EL-ASSAL, S. E.-D., C. ALONSO-BLANCO, A. J. M. PEETERS, V. RAZ and M. KOORNNEEF, 2001 A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2. Nat. Genet. 29: 435-440.
18. EVANS, L. T., 1975 Daylength and the Flowering of Plants. W. A. Benjamin, Menlo Park, CA.
19. FALCONER, D. S., 1952 The problem of environment and selection. Am. Nat. 86: 293-298.
20. FALCONER, D. S., 1990 Selection in different environments: effects on environmental sensitivity (reaction norm) and on mean performance. Genet. Res. 56: 57-70.
21. FISHBEIN, M., and D. L. VENABLE, 1996 Evolution of inflorescence design: theory and data. Evolution 50: 2165-2177.
22. FRY, J. D., 1993 The "general vigor" problem: Can antagonistic pleiotropy be detected when genetic covariances are positive? Evolution 47: 327-333.
23. FRY, J. D., S. V. NUZHDIN, E. G. PASYUKOVA and T. F. C. MACKAY, 1998 QTL mapping of genotype-environment interaction for fitness in Drosophila melanogaster. Genet. Res. 71: 133-141.
24. GILLESPIE, J. H., and M. TURELLI, 1989 Genotype-environment interactions and the maintenance of polygenic variation. Genetics 121: 129-138.
25. GIMELFARB, A., 1990 How much genetic variation can be maintained by genotype-environment interactions? Genetics 124: 443-445.
26. GOMULKIEWICZ, R., and M. KIRKPATRICK, 1992 Quantitative genetics and the evolution of reaction norms. Evolution 46: 390-411.
27. GRBIC, V., and A. B. BLEECKER, 1996 An altered body plan is conferred on Arabidopsis plants carrying dominant alleles of two genes. Development 122: 2395-2403.
28. GREENE, E., 1989 A diet-induced developmental polymorphism in a caterpillar. Science 243: 643-646.
29. GURGANUS, M. C., J. D. FRY, S. V. NUZHDIN, E. G. PASYUKOVA, R. F. LYMAN et al., 1998 Genotype-environment interaction at quantitative trait loci affecting sensory bristle number in Drosophila melanogaster. Genetics 149: 1883-1898.
30. HEDRICK, P. W., 1986 Genetic polymorphism in heterogeneous environments: a decade later. Annu. Rev. Ecol. Syst. 17: 535-566.
31. JANSEN, R. C., J. W. VAN OOIJEN, P. STAM, C. LISTER and C. DEAN, 1995 Genotype-by-environment interaction in genetic mapping of multiple quantitative trait loci. Theor. Appl. Genet. 91: 33-37.
32. JIANG, C., and Z-B. ZENG, 1995 Multiple trait analysis of genetic mapping for quantitative trait loci, Genetics 140: 1111-1127.
33. JIANG, C., G. O. EDMEADES, I. ARMSTEAD, H. R. LAFITTE, M. D. HAYWARD et al., 1999 Genetic analysis of adaptation differences between highland and lowland tropical maize using molecular markers. Theor. Appl. Genet. 99: 1106-1119.
34. KLIEBENSTEIN, D., A. FIGUTH and T. MITCHELL-OLDS, 2002 Genetic architecture of plastic methyl jasmonate responses in Arabidopsis thaliana. Genetics 161: 1685-1696.
35. KOORNNEEF, M., H. BLANKESTIJN-DE VRIES, C. HANHART, W. SOPPE and T. PEETERS, 1994 The phenotype of some late-flowering mutants is enhanced by a locus on chromosome 5 that is not effective in the Landsberg erecta wild-type. Plant J. 6: 911-919.
36. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. J. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
37. LEE, I., S. D. MICHAELS, A. S. MASSHARDT and R. M. AMASINO, 1994 The late-flowering phenotype of FRIGIDA and mutations in LUMINIDEPENDENS is suppressed in the Landsberg erecta strain of Arabidopsis. Plant J. 6: 903-909.
38. LEIPS, J., and T. F. C. MACKAY, 2000 Quantitative trait loci for life-span in Drosophila melanogaster: interactions with genetic background and larval density. Genetics 155: 1773-1788.
39. LISTER, C., and C. DEAN, 1993 Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4: 745-750.
40. LIVELY, C. M., 1986a Canalization versus developmental conversion in a spatially variable environment. Am. Nat. 128: 561-572.
41. LIVELY, C. M., 1986b Predator-induced shell dimorphism in the acorn barnacle Chthamalus anisopoma. Evolution 67: 858-864.
42. LONG, A. D., S. L. MULLANEY, L. A. REID, J. D. FRY, C. H. LANGLEY et al., 1995 High resolution mapping of genetic factors affecting abdominal bristle number in Drosophila melanogaster. Genetics 139: 1273-1291.
43. LYNCH, M., and B. WALSH, 1998 Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, MA.
44. MEYRE, D., A. LEONARDI, G. BRISSON and N. VARTANIAN, 2001 Drought-adaptive mechanisms involved in the escape/tolerance strategies of Arabidopsis Landsberg erecta and Columbia ecotypes and their F1 reciprocal progeny. J. Plant Physiol. 158: 1145-1152.
45. MICHAELS, S. D., and R. M. AMASINO, 1999 FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant Cell 11: 949-956.
46. ORBOVIC, V., and A. TARASJEV, 1999 Genetic differences in plastic responses to density between ecotypes of Arabidopsis thaliana. Russ. J. Genet. 35: 528-536.
47. PIGLIUCCI, M., 1997 Ontogenetic phenotypic plasticity during the reproductive phase in Arabidopsis thaliana (Brassicaceae). Am. J. Bot. 84: 887-895.
48. PIGLIUCCI, M., 2001 Phenotypic Plasticity. Johns Hopkins University Press, Baltimore.
49. RATHCKE, B., and E. P. LACEY, 1985 Phenological patterns of terrestrial plants. Annu. Rev. Ecol. Syst. 16: 179-214.
50. REEVES, P. H., and G. COUPLAND, 2000 Response of plant development to environment: control of flowering by daylength and temperature. Curr. Opin. Plant Biol. 3: 37-42.
51. ROBERTSON, A., 1959 The sampling variance of the genetic correlation coefficient. Biometrics 15: 469-485.
52. SARI-GORLA, M., T. CALINSKI, Z, KACZMAREK and P. KRAJEWSKI, 1997 Detection of QTL × environment interaction in maize by a least squares interval mapping method. Heredity 78: 146-157.
53. SAS INSTITUTE, 1988 SAS/STAT User's Guide, Release 6.03. SAS Institute, Cary, NC.
54. SAS INSTITUTE, 1999 Statview Reference Manual. SAS Institute, Cary, NC.
55. SCHEINER, S. M., 1993 Genetics and evolution of phenotypic plasticity. Annu. Rev. Ecol. Syst. 24: 35-68.
56. SCHLICHTING, C. D., 1986 The evolution of phenotypic plasticity in plants. Annu. Res. Ecol. Syst. 17: 667-693.
57. SCHLICHTING, C. D., and M. PIGLIUCCI, 1998 Phenotypic Evolution: A Reaction Norm Perspective. Sinauer Associates, Sunderland, MA.
58. SCHMALHAUSEN, I. I., 1949 Factors of Evolution: The Theory of Stabilizing Selection. Blakiston, Philadelphia.
59. SCHMITT, J., S. A. DUDLEY and M. PIGLIUCCI, 1999 Manipulative approaches to testing adaptive plasticity: phytochrome-mediated shade-avoidance responses in plants. Am. Nat. 154 (Suppl.): S43-S54.
60. SHELDON, C. C., J. E. BURN, P. P. PEREZ, J. METZGER, J. A. EDWARDS et al., 1999 The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation. Plant Cell 11: 445-458.
61. SHOOK, D. R., and T. E. JOHNSON, 1999 Quantitative trait loci affecting survival and fertility-related traits in Caenorhabditis elegans show genotype-environment interactions, pleiotropy and epistasis. Genetics 153: 1233-1243.
62. SIMPSON, G. G., A. R. GENDALL and C. DEAN, 1999 When to switch to flowering. Annu. Rev. Cell Dev. Biol. 15: 519-531.
63. STRATTON, D. A., 1998 Reaction norm functions and QTL-environment interactions for flowering time in Arabidopsis thaliana. Heredity 81: 144-155.
64. SULTAN, S. E., 2000 Phenotypic plasticity for plant development, function, and life history. Trends Plant Sci. 5: 537-542.
65. THOMAS, B., and D. VINCE-PRUE, 1997 Photoperiodism in Plants. Academic Press, San Diego.
66. TUCKER, S. C., and J. GRIMES, 1999 The inflorescence. Bot. Rev. 65: 303-316.
67. UNGERER, M. C., S. S. HALLDORSDOTTIR, J. L. MODLISZEWSKI, T. F. C. MACKAY and M. D. PURUGGANAN, 2002 Quantitative trait loci for inflorescence development in Arabidopsis thaliana. Genetics 160: 1133-1151.
68. VAN DER SCHAAR, W., C. ALONSO-BLANCO, K. M. LEON-KLOOSTERZIEL, R.C. JANSEN, J. W. VAN OOIJEN et al., 1997 QTL analysis of seed dormancy in Arabidopsis using recombinant inbred lines and MQM mapping. Heredity 79: 190-200.
69. VAN TIENDEREN, P. H., 1997 Generalists, specialists, and the evolution of phenotypic plasticity in sympatric populations of distinct species. Evolution 51: 1372-1380.
70. VAN TIENDEREN, P. H., I. HAMMAD and F. C. ZWAAL, 1996 Pleiotropic effects of flowering time genes in the annual crucifer Arabidopsis thaliana (Brassicaceae). Am. J. Bot. 83: 169-174.
71. VIA, S., and R. LANDE, 1985 Genotype-environment interactions and the evolution of phenotypic plasticity. Evolution 39: 505-522.
72. VIA, S., R. GOMULKIEWICZ, G. DE JONG, S. M. SCHEINER, C. D. SCHLICTING et al., 1995 Adaptive phenotypic plasticity: consensus and controversy. Trends Ecol. Evol. 10: 212-217.
73. VIERA, C., E. G. PASYUKOVA, Z-B. ZENG, J. B. HACKETT, R. F. LYMAN et al., 2000 Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster. Genetics 154: 213-227.
74. WANG, D. L., J. ZHU, Z. K. LI and A. H. PATERSON, 1999 Mapping QTLs with epistatic effects and QTL × environment interactions by mixed linear model approaches. Theor. Appl. Genet. 99: 1255-1264.
75. WEBERLING, F., 1989 Morphology of Flowers and Inflorescences. Cambridge University, Press, Cambridge, UK.
76. WEINIG, C., M. C. UNGERER, L. A. DORN, N. C. KANE, S. S. HALLDORSDOTTIR et al., 2002 Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments. Genetics 162: 1875-1884.
77. WEST-EBERHARD, M. J., 1989 Phenotypic plasticity and the origins of diversity. Annu. Rev. Ecol. Syst. 20: 249-278.
78. ZENG, Z-B., 1994 Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
79. ZHANG, J., and M. J. LECHOWICZ, 1994 Correlation between time of flowering and phenotypic plasticity in Arabidopsis thaliana. Am. J. Bot. 81: 1336-1342.