A time series assessment of planktonic archaeal variability in the Santa Barbara Channel

Aquatic Microbial Ecology

Volumn 20, Issue 2, 1999, Pages 129-145

  Murray, A E ^a   Blakis, A ^a   Massana, R ^a   Strawzewski, S ^a   Passow, U ^a   Alldredge, A ^a   DeLong, E F ^a  

^a MONTEREY BAY AQUARIUM RESEARCH INSTITUTE   (United States)

Author keywords

Bacterioplankton ecology; Planktonic archaea; Santa Barbara Channel; Small subunit rRNA

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); CYANOBACTERIA; EUKARYOTA; PROKARYOTA;

EID: 0033572102     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame020129     Document Type: Article

References (73)

1. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
2. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
3. Bacteria in oceanic carbon cycling as a molecular problem
4. Brief interstatial events in the Santa Barbara basin, NE Pacific, during the past 60 kyr
5. Dynamics of bacterioplankton in oligotrophic and eutrophic aquatic environments: Bottom-up or top-down control?
6. Empirical relationships between bacterial abundance and chlorophyll concentration in fresh and marine waters
7. Photosynthetic picoplankton community structure in the subtropical North Pacific Ocean near Hawaii (station ALOHA)
8. Dynamics of bacterioplankton abundance and production in seagrass communities of a hypersaline lagoon
9. A novel free-living prochlorophyte abundant in the oceanic euphotic zone
10. Major role of bacteria in biogeochemical fluxes in the ocean's interior
11. Urea decomposition by bacteria in the Southern California Bight and its implications for the mesopelagic nitrogen cycle
12. Bacterial production in fresh and saltwater ecosystems: A cross-system overview
13. Bacterioplankton community structure: Protists control net production and the proportion of active bacteria in a coastal marine community
14. Archaea in coastal marine environments
15. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
16. High abundance of Archaea in Antarctic marine picoplankton
17. Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes
18. Bottom-up and top-down control of bacterioplankton from eutrophic to oligotrophic sites in the tropical northeastern Atlantic Ocean
19. Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
20. Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California
21. Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: Evaluation and field results
22. Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences
23. Novel major archaebacterial group from marine plankton
24. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
25. Microbiology
26. Phylogenetic group-specific hybridization probes for identification of single microbial cells
27. Genetic diversity in Sargasso Sea bacterioplankton
28. 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria
29. Regulation of annual variation in heterotrophic bacterial production in the Schelde estuary (SW Netherlands)
30. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans
31. Characteristic patterns of the circulation in the Santa Barbara Channel
32. Long-term change in the north pacific ocean: A consideration of some important issues
33. Surface circulation in the Santa Barbara Channel
34. Seasonal and inter-annual variabihty in bacterial production and biomass in a temperate estuary
35. Relationship between thymidine metabolism, bacterioplankton community metabolic capabilities, and sources of organic matter
36. Flow injection analysis of seawater and micronutrients
37. Leucine incorporation and its potential as measure of protein synthesis by bacteria in natural aquatic systems
38. DNA hybridization to compare species compositions of natural bacterioplankton assemblages
39. Spatial and temporal variation of natural bacterioplankton assemblage studied by total genomic DNA cross-hybridization
40. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
41. Distribution of marine planktonic archaea in the Gerlache strait, Antarctic Peninsula, during early spring
42. Phylogenetic analysis of group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea
43. Bacterioplankton production in the nearshore zone during upwelling off central Chile
44. Seasonal patterns of ocean biogeochemistry at the U.S. JGOFS Bermuda Atlantic Time Series Study Site
45. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
46. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters off Anvers Island, Antarctica
47. Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean
48. Spatial and temporal distributions of prochlorophyte picoplankton in the North Atlantic Ocean
49. The analysis of natural microbial populations by rRNA sequences
50. Fluorometric determination of DNA in aquatic microorganisms by use of Hoechst 33258
51. A simple method for quantification of uncultured microorganisms in the environment based on in vitro transcription of 16S rRNA
52. The use of DAPI for identifying and counting aquatic microflora
53. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp
54. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
55. Seasonal spillover and varve formation in the Santa Barbara Basin, California
56. Relationships between bacteria and heterotrophic nanoplankton in marine and fresh waters: An inter-ecosystem comparison
57. Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum
58. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon, Cenarchaeum symbiosum
59. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
60. Total mass and particulate carbon, nitro gen and phosphorous
61. Multiscale variability in bacterioplankton abundance, production, and specific growth rate in a temperate salt-marsh tidal creek
62. Protein content and protein synthesis rates of planktonic marine bacteria
63. Seasonal variability of metabolically active bacterioplankton in the euphotic zone of a hypertrophic lake
64. Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
65. Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
66. Detection of ammonium-oxidizing bacteria of the beta-subclass of the Class Proteobacteria in aquatic samples with PCR
67. Biological and ecological characterization of the marine unicellular cyanobacterium Synechococcus
68. A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer
69. Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies