-
2
-
-
0031576996
-
Assessing the reliability of RNA folding using statistical mechanics
-
Huynen,M., Gutell,R. and Konings,D. (1997) Assessing the reliability of RNA folding using statistical mechanics. J. Mol. Biol., 267, 1104-1112.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1104-1112
-
-
Huynen, M.1
Gutell, R.2
Konings, D.3
-
3
-
-
2942607685
-
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
-
Eddy,S.R. (2002) A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics, 3, 18.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 18
-
-
Eddy, S.R.1
-
4
-
-
0031743421
-
Profile hidden Markov models
-
Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
5
-
-
0028249154
-
Prediction of RNA secondary structure by energy minimization
-
Zuker,M. (1994) Prediction of RNA secondary structure by energy minimization. Methods Mol. Biol., 25, 267-294.
-
(1994)
Methods Mol. Biol.
, vol.25
, pp. 267-294
-
-
Zuker, M.1
-
6
-
-
0034070995
-
Calculating nucleic acid secondary structure
-
Zuker,M. (2000) Calculating nucleic acid secondary structure. Curr. Opin. Struct. Biol., 10, 303-310.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 303-310
-
-
Zuker, M.1
-
7
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures (The Vienna RNA Package)
-
Hofacker,I., Fontana,W, Stadler,P., Bonhoeffer,L., Tacker,M. and Schuster,P. (1994) Fast folding and comparison of RNA secondary structures (The Vienna RNA Package). Monatshefte fuer Chemie (Chemical Monthly), 125, 167-188.
-
(1994)
Monatshefte Fuer Chemie (Chemical Monthly)
, vol.125
, pp. 167-188
-
-
Hofacker, I.1
Fontana, W.2
Stadler, P.3
Bonhoeffer, L.4
Tacker, M.5
Schuster, P.6
-
8
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge,C. and Karlin,S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268, 78-94.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
9
-
-
0025822118
-
Identification of a novel iron-responsive element in murine and human erythroid delta-aminolevulinic acid synthase mRNA
-
Dandekar,T., Stripecke,R., Gray,N.K., Goossen,B., Constable,A., Johansson,H.E. and Hentze,M.W. (1991) Identification of a novel iron-responsive element in murine and human erythroid delta-aminolevulinic acid synthase mRNA. EMBO J., 10, 1903-1909.
-
(1991)
EMBO J.
, vol.10
, pp. 1903-1909
-
-
Dandekar, T.1
Stripecke, R.2
Gray, N.K.3
Goossen, B.4
Constable, A.5
Johansson, H.E.6
Hentze, M.W.7
-
10
-
-
0029899154
-
Translational regulation of mammalian and Drosophila citric acid cycle enzymes via iron-responsive elements
-
Gray,N.K., Pantopoulos,K., Dandekar,T., Ackrell,B.A. and Hentze,M.W. (1996) Translational regulation of mammalian and Drosophila citric acid cycle enzymes via iron-responsive elements. Proc. Natl Acad. Sci. USA, 93, 4925-4930.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 4925-4930
-
-
Gray, N.K.1
Pantopoulos, K.2
Dandekar, T.3
Ackrell, B.A.4
Hentze, M.W.5
-
11
-
-
0025033462
-
Trans-splicing of pre-mRNA is predicted to occur in a wide range of organisms including vertebrates
-
Dandekar,T. and Sibbald,P.R. (1990) Trans-splicing of pre-mRNA is predicted to occur in a wide range of organisms including vertebrates. Nucleic Acids Res., 18, 4719-4725.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 4719-4725
-
-
Dandekar, T.1
Sibbald, P.R.2
-
13
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe,T.M. and Eddy,S.R. (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
14
-
-
0036800016
-
Artificial neural network prediction of antisense oligodeoxynucleotide activity
-
Giddings,M.C., Shah,A.A., Freier,S., Atkins,J.F., Gesteland,R.F. and Matveeva,O.V. (2002) Artificial neural network prediction of antisense oligodeoxynucleotide activity. Nucleic Acids Res., 30, 4295-4304.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4295-4304
-
-
Giddings, M.C.1
Shah, A.A.2
Freier, S.3
Atkins, J.F.4
Gesteland, R.F.5
Matveeva, O.V.6
-
15
-
-
2942571539
-
The Comparative RNA Web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone,J.J., Subramanian,S., Schnare,M.N., Collett,J.R., D'Souza,L.M., Du,Y., Feng,B., Lin,N., Madabusi,L.V. et al. (2002) The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics, 3, 2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
-
16
-
-
0033198381
-
Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNA
-
Pesole,G. and Liuni,S. (1999) Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNA. Trends Genet., 15, 378.
-
(1999)
Trends Genet.
, vol.15
, pp. 378
-
-
Pesole, G.1
Liuni, S.2
-
17
-
-
0037252788
-
ARED 2.0: An update of AU-rich element mRNA database
-
Bakheet,T., Williams,B.R. and Khabar,K.S. (2003) ARED 2.0: an update of AU-rich element mRNA database. Nucleic Acids Res., 31, 421-423.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 421-423
-
-
Bakheet, T.1
Williams, B.R.2
Khabar, K.S.3
-
18
-
-
0036566143
-
Expression of the two mRNA isoforms of the iron transporter Nrmap2/DMTI in mice and function of the iron responsive element
-
Tchernitchko,D., Bourgeois,M., Martin,M.E. and Beaumont,C. (2002) Expression of the two mRNA isoforms of the iron transporter Nrmap2/DMTI in mice and function of the iron responsive element. Biochem. J., 363, 449-455.
-
(2002)
Biochem. J.
, vol.363
, pp. 449-455
-
-
Tchernitchko, D.1
Bourgeois, M.2
Martin, M.E.3
Beaumont, C.4
-
19
-
-
0036489460
-
A versatile structural domain analysis server using profile weight matrices
-
Schmidt,S., Bork,P. and Dandekar,T. (2002) A versatile structural domain analysis server using profile weight matrices. J. Chem. Inf. Comput. Sci., 42, 405-407.
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 405-407
-
-
Schmidt, S.1
Bork, P.2
Dandekar, T.3
|