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Volumn 267, Issue 5, 1997, Pages 1104-1112

Assessing the reliability of RNA folding using statistical mechanics

Author keywords

Base pairing probability distribution; Ribosomal RNA; RNA folding; RNA secondary structure; Thermophiles

Indexed keywords

RIBOSOME RNA; RNA 16S; RNA 23S;

EID: 0031576996     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.0889     Document Type: Article
Times cited : (84)

References (29)
  • 2
    • 0029880537 scopus 로고    scopus 로고
    • Strategies for RNA folding
    • Draper D. E. Strategies for RNA folding. Trends Biochem. Sci. 21:1996;145-149.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 145-149
    • Draper, D.E.1
  • 3
    • 0029147392 scopus 로고
    • Structurally complex and highly active RNA ligases derived from random RNA sequences
    • Ekland E. H., Szostak J. W., Bartel D. P. Structurally complex and highly active RNA ligases derived from random RNA sequences. Science. 269:1995;364-370.
    • (1995) Science , vol.269 , pp. 364-370
    • Ekland, E.H.1    Szostak, J.W.2    Bartel, D.P.3
  • 4
    • 0030324880 scopus 로고    scopus 로고
    • An analysis of large rRNA sequences folded by a thermodynamic method
    • Fields D. S., Gutell R. R. An analysis of large rRNA sequences folded by a thermodynamic method. Fold. Des. 1:1996;419-430.
    • (1996) Fold. Des. , vol.1 , pp. 419-430
    • Fields, D.S.1    Gutell, R.R.2
  • 5
    • 0025781624 scopus 로고
    • Psychrotrophic, lactic acid-producing bacteria from anoxic waters in ace lake, Antarctica;Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov
    • Franzmann P., Hopfl P., Weiss N., Tindall B. J. Psychrotrophic, lactic acid-producing bacteria from anoxic waters in ace lake, Antarctica;Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov. Arch. Microbiol. 156:1991;255-262.
    • (1991) Arch. Microbiol. , vol.156 , pp. 255-262
    • Franzmann, P.1    Hopfl, P.2    Weiss, N.3    Tindall, B.J.4
  • 7
    • 0029061125 scopus 로고
    • The computer simulation of RNA folding pathways using a genetic algorithm
    • Gultyaev A. P., van Batenburg F. H., Pleij C. W. The computer simulation of RNA folding pathways using a genetic algorithm. J. Mol. Biol. 250:1995;37-51.
    • (1995) J. Mol. Biol. , vol.250 , pp. 37-51
    • Gultyaev, A.P.1    Van Batenburg, F.H.2    Pleij, C.W.3
  • 8
    • 0028071557 scopus 로고
    • Collection of small subunit (16 S- and 16 S-like)ribosomal RNA structures: 1994
    • Gutell R. R. Collection of small subunit (16 S- and 16 S-like)ribosomal RNA structures: 1994. Nucl. Acids Res. 22:1994;3502-3507.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 9
    • 0027225783 scopus 로고
    • A compilation of large subunit (23 S and 23 S-like) ribosomal RNA structures
    • Gutell R. R., Gray M. W., Schnare M. N. A compilation of large subunit (23 S and 23 S-like) ribosomal RNA structures. Nucl. Acids Res. 21:1993;3055-3074.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 10
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective
    • Gutell R. R., Larsen N., Woese C. Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective. Microbiol. Rev. 58:1994;10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.3
  • 12
    • 0002304830 scopus 로고
    • RNA secondary structure: A comparison of real and random sequences
    • Higgs P. RNA secondary structure: a comparison of real and random sequences. J. Phys. France. 3:1993;43-59.
    • (1993) J. Phys. France , vol.3 , pp. 43-59
    • Higgs, P.1
  • 16
    • 0026683407 scopus 로고
    • Equal G and C contents in Histone genes indicate selection pressures on mRNA secondary structure
    • Huynen M. A., Konings D., Hogweg P. Equal G and C contents in Histone genes indicate selection pressures on mRNA secondary structure. J. Mol. Evol. 34:1992;280-291.
    • (1992) J. Mol. Evol. , vol.34 , pp. 280-291
    • Huynen, M.A.1    Konings, D.2    Hogweg, P.3
  • 18
  • 19
    • 0029348884 scopus 로고
    • A comparison of thermodynamic foldings with comparatively derived structures of 16 S and 16 S-like rRNAs
    • Konings D., Gutell R. A comparison of thermodynamic foldings with comparatively derived structures of 16 S and 16 S-like rRNAs. RNA. 1:1995;559-574.
    • (1995) RNA , vol.1 , pp. 559-574
    • Konings, D.1    Gutell, R.2
  • 20
    • 0020744598 scopus 로고
    • Computer building and folding of fictitious transfer-RNA sequences
    • Marliere P. Computer building and folding of fictitious transfer-RNA sequences. Biochimie. 65:1983;267-273.
    • (1983) Biochimie , vol.65 , pp. 267-273
    • Marliere, P.1
  • 22
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structure
    • McCaskill J. S. The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers. 29:1990;1105-1119.
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 23
    • 0000731155 scopus 로고    scopus 로고
    • Evidence for kinetic effects in the folding of large RNA molecules
    • Morgan S. R., Higgs P. G. Evidence for kinetic effects in the folding of large RNA molecules. J. Chem. Phys. 105:1996;7152-7157.
    • (1996) J. Chem. Phys. , vol.105 , pp. 7152-7157
    • Morgan, S.R.1    Higgs, P.G.2
  • 24
    • 0029286628 scopus 로고
    • Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA
    • Powers T., Noller H. F. Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA. RNA. 1:1995;194-209.
    • (1995) RNA , vol.1 , pp. 194-209
    • Powers, T.1    Noller, H.F.2
  • 26
    • 0024973814 scopus 로고
    • Unusual mRNA pseudoknot structure is recognized by a protein translational repressor
    • Tang C. K., Draper D. E. Unusual mRNA pseudoknot structure is recognized by a protein translational repressor. Cell. 57:1989;531-536.
    • (1989) Cell , vol.57 , pp. 531-536
    • Tang, C.K.1    Draper, D.E.2
  • 27
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C. R. Bacterial evolution. Microbiol. Rev. 51:1987;221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 28
    • 0029131459 scopus 로고
    • "Well-determined" regions in RNA secondary structure prediction: Analysis of small subunit ribosomal RNA
    • Zuker M., Jacobsen A. B. "Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA. Nucl. Acids Res. 23:1995;2791-2798.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 2791-2798
    • Zuker, M.1    Jacobsen, A.B.2
  • 29
    • 0019876473 scopus 로고
    • Optimal computer folding of larger RNA sequences using thermodynamics and auxiliary information
    • Zuker M., Stiegler P. Optimal computer folding of larger RNA sequences using thermodynamics and auxiliary information. Nucl. Acids Res. 9:1981;133-148.
    • (1981) Nucl. Acids Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.