Analysis of matrix metalloproteinase triple-helical peptidase activity with substrates incorporating fluorogenic L- or D-amino acids

Analytical Biochemistry

Volumn 321, Issue 1, 2003, Pages 105-115

  Lauer Fields, Janelle L ^a   Kele, Péter ^b   Sui, Guodong ^b   Nagase, Hideaki ^c   Leblanc, Roger M ^b   Fields, Gregg B ^a  

^a FLORIDA ATLANTIC UNIVERSITY   (United States)

^b Department of Biology   (United States)

^c IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

FLUOROPHORES; QUENCHING; SATURATED FATTY ACIDS; SUBSTRATES;

FLUOROGENICS; HELICAL PEPTIDE; MATRIX METALLOPROTEINASE-2; MATRIX METALLOPROTEINASES; PEPTIDASE ACTIVITY; SELF-QUENCHING; STOKES SHIFT; TRIPLE-HELICES;

PROPIONIC ACID;

2 AMINO 3 (6,7 DIMETHOXY 4 COUMARYL)PROPIONIC ACID; 2 AMINO 3 (7 METHOXY 4 COUMARYL)PROPIONIC ACID; AMINO ACID DERIVATIVE; BENZENE DERIVATIVE; GELATINASE A; INTERSTITIAL COLLAGENASE; LYSINE DERIVATIVE; MATRIX METALLOPROTEINASE; PEPTIDASE; PROPIONIC ACID; PROPIONIC ACID DERIVATIVE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL REACTION; COMPARATIVE STUDY; ENZYME ACTIVITY; ENZYME SUBSTRATE; EVALUATION; HYDROLYSIS; KINETICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; TRIPLE HELIX;

EID: 0042696223     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2697(03)00460-3     Document Type: Article

References (83)

1. Woessner J.F., Nagase H. Matrix Metalloproteinases and TIMPs. 2000;Oxford University Press, Oxford.
2. McCawley L.J., Matrisian L.M. Curr. Opin. Cell Biol. 13:2001;534-540.
3. Overall C.M. Mol. Biotechnol. 22:2002;51-86.
4. Brömme D., Okamoto K., Wang B.B., Biroc S. J. Biol. Chem. 271:1996;2126-2132.
5. Li Z., Hou W.-S., Brömme D. Biochemistry. 39:2000;529-536.
6. Grant G.A., Henderson K.O., Eisen A.Z., Bradshaw R.A. Biochemistry. 19:1980;4653-4659.
7. Lecroisey A., Gilles A.-M., De Wolf A., Keil B. J. Biol. Chem. 262:1987;7546-7551.
8. Sellos D., Van Wormhoudt A. FEBS Lett. 309:1992;219-224.
9. Park J.E., Lenter M.C., Zimmermann R.N., Garin-Chesa P., Old L.J., Rettig W.J. J. Biol. Chem. 274:1999;36505-36512.
10. Moilanen M., Sorsa T., Stenman M., Nyberg P., Lindy O., Vesterinen J., Paju A., Konttinen Y.T., Stenman U.-H., Salo T. Biochemistry. 42:2003;5414-5420.
11. Komsa-Penkova R.S., Rashap R.K., Yomtova V.M. J. Biochem. Biophys. Methods. 34:1997;237-249.
12. Cawston T.E., Koshy P., Rowan A.D. Methods in Molecular Biology. Clark I.M. Matrix Metalloproteinase Protocols. vol. 151:2001;389-397 Humana Press, Totowa, NJ.
13. Sameni M., Dosescu J., Sloane B.F. Biol. Chem. 382:2001;785-788.
14. Lauer-Fields J.L., Juska D., Fields G.B. Biopolymers (Peptide Sci.). 66:2002;19-32.
15. Grab B., Miles A.J., Furcht L.T., Fields G.B. J. Biol. Chem. 271:1996;12234-12240.
16. Ottl J., Battistuta R., Pieper M., Tschesche H., Bode W., Kühn K., Moroder L. FEBS Lett. 398:1996;31-36.
17. Yu Y.-C., Berndt P., Tirrell M., Fields G.B. J. Am. Chem. Soc. 118:1996;12515-12520.
18. Yu Y.-C., Tirrell M., Fields G.B. J. Am. Chem. Soc. 120:1998;9979-9987.
19. Yu Y.-C., Roontga V., Daragan V.A., Mayo K.H., Tirrell M., Fields G.B. Biochemistry. 38:1999;1659-1668.
20. Ottl J., Moroder L. J. Am. Chem. Soc. 121:1999;653-661.
21. Ottl J., Murphy G., Knäuper V., Tominaga Y., Nagase H., Kröger M., Tschesche H., Bode W., Moroder L. Chem. Biol. 7:2000;119-132.
22. Lauer-Fields J.L., Shimokawa K., Nagase H., Fields G.B. J. Biol. Chem. 275:2000;13282-13290.
23. Lauer-Fields J.L., Nagase H., Fields G.B. J. Chromatogr. A. 890:2000;117-125.
24. Fiori S., Saccá B., Moroder L. J. Mol. Biol. 319:2002;1235-1242.
25. Müller J.C.D., Ottl J., Moroder L. Biochemistry. 39:2000;5111-5116.
26. Lauer-Fields J.L., Broder T., Sritharan T., Nagase H., Fields G.B. Biochemistry. 40:2001;5795-5803.
27. Lauer-Fields J.L., Fields G.B. Biol. Chem. 383:2002;1095-1105.
28. Lauer-Fields J.L., Sritharan T., Stack M.S., Nagase H., Fields G.B. J. Biol.Chem. 278:2003;18140-18145.
29. Malkar N.B., Fields G.B. Lett. Peptide Sci. 7:2001;263-267.
30. Shah N.K., Brodsky B., Kirkpatrick A., Ramshaw J.A.M. Biopolymers. 49:1999;297-302.
31. Fields G.B. J. Theor. Biol. 153:1991;585-602.
32. Nagase H., Fields C.G., Fields G.B. J. Biol. Chem. 269:1994;20952-20957.
33. Kele P., Sui G., Huo Q., Leblanc R.M. Tetrahedron Asymmetry. 11:2000;4959-4963.
34. Sui G., Kele P., Orbulescu J., Huo Q., Leblanc R.M. Lett. Peptide Sci. 8:2002;47-51.
35. Fields G.B., Lauer-Fields J.L., Liu R.-q., Barany G. Grant G.A. Synthetic Peptides: A User's Guide. second ed. 2001;93-219 W.H. Freeman, New York.
36. Fields C.G., VanDrisse V.L., Fields G.B. Peptide Res. 6:1993;39-47.
37. Fields C.G., Fields G.B. Tetrahedron Lett. 34:1993;6661-6664.
38. Fields C.G., Grab B., Lauer J.L., Fields G.B. Anal. Biochem. 231:1995;57-64.
39. Lauer-Fields J.L., Malkar N.B., Richet G., Drauz K., Fields G.B. J. Biol. Chem. 278:2003;14321-14330.
40. Fields C.G., Mickelson D.J., Drake S.L., McCarthy J.B., Fields G.B. J. Biol. Chem. 268:1993;14153-14160.
41. Henkel W., Vogl T., Echner H., Voelter W., Urbanke C., Schleuder D., Rauterberg J. Biochemistry. 38:1999;13610-13622.
42. Chung L., Shimokawa K., Dinakarpandian D., Grams F., Fields G.B., Nagase H. J. Biol. Chem. 275:2000;29610-29617.
43. Itoh Y., Binner S., Nagase H. Biochem. J. 308:1995;645-651.
44. Huang W., Suzuki K., Nagase H., Arumugam S., Van Doren S., Brew K. FEBS Lett. 384:1996;155-161.
45. Baldwin C.T., Reginato A.M., Smith C., Jimenez S.A., Prockop D.J. Biochem. J. 262:1989;521-528.
46. Miller E.J., Harris E.D. Jr., Chung E., Finch J.E. Jr., McCroskery P.A., Butler W.T. Biochemistry. 15:1976;787-792.
47. Billinghurst R.C., Dahlberg L., Ionescu M., Reiner A., Bourne R., Rorabeck C., Mitchell P., Hambor J., Diekmann O., Tschesche H., Chen J., Van Wart H., Poole R. J. Clin. Invest. 99:1997;1534-1545.
48. Venugopal M.G., Ramshaw J.A.M., Braswell E., Zhu D., Brodsky B. Biochemistry. 33:1994;7948-7956.
49. Malkar N.B., Lauer-Fields J.L., Borgia J.A., Fields G.B. Biochemistry. 41:2002;6054-6064.
50. Fields G.B., Prockop D.J. Biopolymers. 40:1996;345-357.
51. Feng Y., Melacini G., Taulane J.P., Goodman M. J. Am. Chem. Soc. 118:1996;10351-10358.
52. Bella J., Eaton M., Brodsky B., Berman H.M. Science. 266:1994;75-81.
53. Nagarajan V., Kamitori S., Okuyama K. J. Biochem. 124:1998;1117-1123.
54. Nagarajan V., Kamitori S., Okuyama K. J. Biochem. 125:1999;310-318.
55. Kramer R.Z., Venugopal M.G., Bella J., Mayville P., Brodsky B., Berman H.M. J. Mol. Biol. 301:2000;1191-1205.
56. Fraser R.D.B., MacRae T.P., Suzuki E. J. Mol. Biol. 129:1979;463-481.
57. Kramer R.Z., Bella J., Mayville P., Brodsky B., Berman H.M. Nat. Struct. Biol. 6:1999;454-457.
58. Li M.H., Fan P., Brodsky B., Baum J. Biochemistry. 32:1993;7377-7387.
59. Knight C.G., Willenbrock F., Murphy G. FEBS Lett. 296:1992;263-266.
60. Nagase H., Fields G.B. Biopolymers. 40:1996;399-416.
61. Fields G.B. Methods in Molecular Biology. Clark I.M. Matrix Metalloproteinase Protocols. vol. 151:2001;495-518 Humana Press, Totowa, NJ.
62. Stack M.S., Gray R.D. J. Biol. Chem. 264:1989;4277-4281.
63. Niedzwiecki L., Teahan J., Harrison R.K., Stein R.L. Biochemistry. 31:1992;12618-12623.
64. Bouvier J., Schneider P., Malcolm B. Exp. Parasitol. 76:1993;146-155.
65. Knight C.G. Methods Enzymol. 248:1995;18-34.
66. Itoh M., Osaka M., Chiba T., Masuda K., Akizawa T., Yoshioka M., Seiki M. J. Pharmaceut. Biomed. Anal. 15:1997;1417-1426.
67. Bickett D.M., Green M.D., Berman J., Dezube M., Howe A.S., Brown P.J., Roth J.T., McGeehan G.M. Anal. Biochem. 212:1993;58-64.
68. Beekman B., Wouter J., Bloemhoff W., Ronday K., Tak P.P., te Koppele J.M. FEBS Lett. 390:1996;221-225.
69. Geoghegan K.F., Emery M.J., Martin W.H., McColl A.S., Daumy G.O. Bioconjugate Chem. 4:1993;537-544.
70. Geoghegan K.F. Bioconjug. Chem. 7:1996;385-391.
71. Knight C.G. Lett. Peptide Sci. 5:1998;1-4.
72. Bennett F.A., Barlow D.J., Dodoo A.N.O., Hider R.C., Lansley A.B., Lawrence M.J., Marriott C., Bansai S.S. Tetrahedron Lett. 38:1997;7449-7452.
73. Paschalidou K., Tzougraki C. Lett. Peptide Sci. 7:2001;249-253.
74. Persikov A.V., Ramshaw J.A.M., Kirkpatrick A., Brodsky B. Biochemistry. 39:2000;14960-14967.
75. Vitagliano L., Berisio R., Mazzarella L., Zagari A. Biopolymers. 58:2001;459-464.
76. Forns P., Lauer-Fields J.L., Gao S., Fields G.B. Biopolymers. 54:2000;531-546.
77. Gore T., Dori Y., Talmon Y., Tirrell M., Bianco-Peled H. Langmuir. 17:2001;5352-5360.
78. Welgus H.G., Jeffrey J.J., Eisen A.Z. J. Biol. Chem. 256:1981;9516-9521.
79. Patterson M.L., Atkinson S.J., Knäuper V., Murphy G. FEBS Lett. 503:2001;158-162.
80. Murphy G., Knäuper V. Matrix Biol. 15:1997;511-518.
81. Zucker S., Mancuso P., DiMassimo B., Lysik R.M., Conner C., Wu C.-L. Clin. Exp. Metastasis. 12:1994;13-23.
82. Gogly B., Groult N., Hornebeck W., Godeau G., Pellat B. Anal. Biochem. 255:1998;211-216.
83. Billinghurst R.C., Ionescu M., Poole A.R. Methods in Molecular Biology. Clark I.M. Matrix Metalloproteinase Protocols. vol. 151:2001;457-472 Humana Press, Totowa, NJ.