Kinetic analysis of matrix metalloproteinase activity using fluorogenic triple-helical substrates

Biochemistry

Volumn 40, Issue 19, 2001, Pages 5795-5803

  Lauer Fields, Janelle L ^a   Broder, Todd ^a   Sritharan, Thilaka ^a   Chung, Linda ^b   Nagase, Hideaki ^b   Fields, Gregg B ^a  

^a FLORIDA ATLANTIC UNIVERSITY   (United States)

^b IMPERIAL COLLEGE SCHOOL OF MEDICINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ENERGY; COLLAGEN; ENZYME KINETICS; HYDROLYSIS; PATHOLOGY; PHYSIOLOGICAL MODELS; SYNTHESIS (CHEMICAL); THERMAL EFFECTS; TISSUE;

COVALENT BRANCHING PROTOCOL;

ENZYMES;

MATRIX METALLOPROTEINASE;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; ENERGY; ENZYME ACTIVE SITE; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME SUBSTRATE; HUMAN; HUMAN CELL; HYDROLYSIS; NONHUMAN; PRIORITY JOURNAL; TEMPERATURE;

AMINO ACID SEQUENCE; ANIMALS; CELLS, CULTURED; COLLAGEN; COLLAGENASES; FLUORESCENT DYES; HUMANS; HYDROLYSIS; KINETICS; MATRIX METALLOPROTEINASE 1; MATRIX METALLOPROTEINASE 13; MATRIX METALLOPROTEINASE 2; MATRIX METALLOPROTEINASE 3; MATRIX METALLOPROTEINASES; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, SECONDARY; RABBITS; SUBSTRATE SPECIFICITY; THERMODYNAMICS;

ANIMALIA;

EID: 0035873874     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0101190     Document Type: Article

References (59)

1. Birkedal-Hansen, H., Moore, W. G. I., Bodden, M. K., Windsor, L. J., Birkedal-Hansen, B., DeCarlo, A., and Engler, J A. (1993) Crit. Rev. Oral Biol. Med. 4, 197-250.
2. Woessner, J. F., and Nagase, H. (2000) Matrix Metalloproteinases and TIMPs, Oxford University Press, Oxford, U.K.
3. Fields, G. B. (1991) J. Theor. Biol. 153, 585-602.
4. Freije, J. M. P., Diez-Itza, T., Balbin, M., Sanchez, L. M., Blasco, R., Tolivia, J., and Lopez-Otin, C. (1994) J. Biol. Chem. 269, 16766-16773.
5. Aimes, R. T., and Quigley, J. P. (1995) J. Biol. Chem. 270, 5872-5876.
6. Stolow, M. A., Bauzon, D. D., Li, J., Sedgwick, T., Liang, V. C., Sang, Q. A., and Shi, Y. B. (1996) Mol. Biol. Cell 7, 1471-1483.
7. Mitchell, P. G., Magna, H. A., Reeves, L. M., Lopresti-Morrow, L. L., Yocum, S. A., Rosner, P. J., Geoghegan, K. F., and Hambor, J. E. (1996) J. Clin. Invest. 97, 761-768.
8. Knäuper, V., López-Otin, C., Smith, B., Knight, G., and Murphy, G. (1996) J. Biol. Chem. 271, 1544-1550.
9. Ohuchi, E., Imai, K., Fujii, Y., Sato, H., Seiki, M., and Okada, Y. (1997) J. Biol. Chem. 272, 2446-2451.
10. Allan, J. A., Hembry, R. M., Angal, S., Reynolds, J. J., and Murphy, G. (1991) J. Cell Sci. 99, 789-795.
11. Murphy, G., Allan, J. A., Willenbrock, F., Cockett, M. I., O'Connell, J. P., and Docherty, A. J. P. (1992) J. Biol. Chem. 267, 9612-9618.
12. Allan, J. A., Docherty, A. J. P., Barker, P. J., Huskisson, N. S., Reynolds, J. J., and Murphy, G. (1995) Biochem. J. 309, 299-306.
13. Chung, L., Shimokawa, K., Dinakarpandian, D., Grams, F., Fields, G. B., and Nagase, H. (2000) J. Biol. Chem. 275, 29610-29617.
14. Ottl, J., Battistuta, R., Pieper, M., Tschesche, H., Bode, W., Kühn, K., and Moroder, L. (1996) FEBS Lett. 398, 31-36.
15. Ottl, J., and Moroder, L. (1999) J. Am. Chem. Soc. 121, 653-661.
16. Ottl, J., Gabriel, D., Murphy, G., Knäuper, V., Tominaga, Y., Nagase, H., Kröger, M., Tschesche, H., Bode, W., and Moroder, L. (2000) Chem. Biol. 7, 119-132.
17. Lauer-Fields, J. L., Tuzinski, K. A., Shimokawa, K., Nagase, H., and Fields, G. B. (2000) J. Biol. Chem. 275, 13282-13290.
18. Fields, G. B. (2000) in Methods in Molecular Biology, Vol. 151: Matrix Metalloproteinase Protocols (Clark, I. M., Ed.) pp 495-518, Humana Press, Totowa, NJ.
19. Knight, C. G., Willenbrock, F., and Murphy, G. (1992) FEBS Lett. 296, 263-266.
20. Nagase, H., Fields, C. G., and Fields, G. B. (1994) J. Biol. Chem. 269, 20952-20957.
21. Müller, J. C. D., Ottl, J., and Moroder, L. (2000) Biochemistry 39, 5111-5116.
22. Nagase, H., and Fields, G. B. (1996) Biopolymers 40, 399-416.
23. Fields, C. G., Mickelson, D. J., Drake, S. L., McCarthy, J. B., and Fields, G. B. (1993) J. Biol. Chem. 268, 14153-14160.
24. Fields, C. G., Lovdahl, C. M., Miles, A. J., Matthias-Hagen, V. L., and Fields, G. B. (1993) Biopolymers 33, 1695-1707.
25. Grab, B., Miles, A. J., Furcht, L. T., and Fields, G. B. (1996) J. Biol. Chem. 271, 12234-12240.
26. Yu, Y.-C., Berndt, P., Tirrell, M., and Fields, G. B. (1996) J. Am. Chem. Soc. 118, 12515-12520.
27. Yu, Y.-C., Tirrell, M., and Fields, G. B. (1998) J. Am. Chem. Soc. 120, 9979-9987.
28. Yu, Y.-C., Roontga, V., Daragan, V. A., Mayo, K. H., Tirrell, M., and Fields, G. B. (1999) Biochemistry 38, 1659-1668.
29. Baldwin, C. T., Reginato, A. M., Smith, C., Jimenez, S. A., and Prockop, D. J. (1989) Biochem. J. 262, 521-528.
30. Fields, C. G., Grab, B., Lauer. J. L., Miles, A. J., Yu, Y.-C., and Fields, G. B. (1996) Lett. Pept. Sci. 3, 3-16.
31. Fields, G. B., Tian, Z., and Barany, G. (1992) in Synthetic Peptides: A User's Guide (Grant, G. A., Ed.) pp 77-183, W. H. Freeman & Co., New York.
32. Fields, C. G., VanDrisse, V. L., and Fields, G. B. (1993) Pept. Res. 6, 39-47.
33. Fields, C. G., and Fields, G. B. (1993) Tetrahedron Lett. 34, 6661-6664.
34. Henkel, W., Vogl, T., Echner, H., Voelter, W., Urbanke, C., Schleuder, D., and Rauterberg, J. (1999) Biochemistry 38, 13610-13622.
35. Suzuki, K., Enghild, J. J., Morodomi, T., Salvesen, G., and Nagase, H. (1990) Biochemistry 29, 10261-10270.
36. Ito, A., and Nagase, H. (1988) Arch. Biochem. Biophys. 267, 211-216.
37. Itoh, Y., Binner, S., and Nagase, H. (1995) Biochem. J. 308, 645-651.
38. Suzuki, K., Kan, C.-C., Huang, W., Gehring, M. R., Brew, K., and Nagase, H. (1998) Biol. Chem. 379, 185-191.
39. Huang, W., Suzuki, K., Nagase, H., Arumugam, S., Van Doren, S., and Brew, K. (1996) FEBS Lett. 384, 155-161.
40. Miller, E. J., Harris, J. E. D., Chung, E., Finch, J. J. E., McCroskery, P. A., and Butler, W. T. (1976) Biochemistry 15, 787-792.
41. Billinghurst, R. C., Dahlberg, L., Ionescu, M., Reiner, A., Bourne, R., Rorabeck, C., Mitchell, P., Hambor, J., Diekmann, O., Tschesche, H., Chen, J., Van Wart, H., and Poole, R. (1997) J. Clin. Invest. 99, 1534-1545.
42. Lauer-Fields, J. L., Nagase, H., and Fields, G. B. (2000) J. Chromatogr., A 890, 117-125.
43. Clark, I. N., and Cawston, T. E. (1989) Biochem. J. 263, 201-206.
44. Knight, C. G. (1995) Methods Enzymol. 248, 18-34.
45. Gershkovich, A. A., and Kholodovych, V. V. (1996) J. Biochem. Biophys. Methods 33, 135-162.
46. Knight, C. G. (1991) Biochem. J. 274, 45-48.
47. Knight, C. G. (1998) Lett. Pept. Sci. 5, 1-4.
48. Bickett, D. M., Green, M. D., Berman, J., Dezube, M., Howe, A. S., Brown, P. J., Roth, J. T., and McGeehan, G. M. (1993) Anal. Biochem. 212, 58-64.
49. Malkar, N. B., and Fields, G. B. (2001) Lett. Pept. Sci. (in press).
50. Holmgren, S. K., Taylor, K. M., Bretscher, L. E., and Raines, R. T. (1998) Nature 392, 666-667.
51. Bella, J., and Berman, H. M. (1996) J. Mol. Biol. 264, 734-742.
52. Hirose, T., Patterson, C., Pourmotabbed, T., Mainardi, C. L., and Hasty, K. A. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 2569-2573.
53. Li, J., Brick, P., O'Hare, M. C., Skarzynski, T., Lloyd, L. F., Curry, V. A., Clark, I. M.. Bigg, H. F., Hazleman, B. L., Cawston, T. E., and Blow, D. M. (1995) Structure 15, 541-549.
54. Knäuper, V., Osthues, A., DeClerk, Y. A., Langley, K. E., Bläser, J., and Tschesche, H. (1993) Biochem. J. 291, 847-854.
55. Welgus, H. G., Jeffrey, J. J., and Eisen, A. Z. (1981) J. Biol. Chem. 256, 9516-9521.
56. Steffensen, B., Wallon, U. M., and Overall, C. M. (1995) J. Biol. Chem. 270, 11555-11566.
57. Kramer, R. Z., Bella, J., Mayville, P., Brodsky, B., and Berman, H. M. (1999) Nat. Struct. Biol. 6, 454-457.
58. Bode, W., Fernandez-Catalan, C., Tschesche, H., Grams, F., Nagase, H., and Maskos, K. (1999) Cell. Mol. Life Sci. 55, 639-652.
59. Bella, J., Eaton, M., Brodsky, B., and Berman, H. M. (1994) Science 266, 75-81.