cDNA suppression subtraction library for screening down-regulated genes in gastric carcinoma

World Journal of Gastroenterology

Volumn 9, Issue 7, 2003, Pages 1439-1443

  Du, Jian Jun ^a   Dou, Ke Feng ^a   Peng, Shu You ^c   Xiao, Hua Sheng ^b   Wang, Wei Zhong ^a   Guan, Wen Xian ^a   Wang, Zhong Hua ^a   Gao, Zhi Qing ^a   Liu, Ying Bin ^c  

^a FOURTH MILITARY MEDICAL UNIVERSITY   (China)

^b FOURTH MILITARY MEDICAL UNIVERSITY   (China)

^c ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR DNA; DEOXYCYTIDINE TRIPHOSPHATE; MESSENGER RNA; PHOSPHORUS 32; PLASMID VECTOR;

ARTICLE; BACTERIUM COLONY; CANCER CELL CULTURE; CLINICAL ARTICLE; CONTROLLED STUDY; DNA LIBRARY; DNA SCREENING; DOWN REGULATION; GENETIC SCREENING; HUMAN; HUMAN CELL; HUMAN TISSUE; HYBRIDIZATION; ISOLATION PROCEDURE; POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION; RNA PURIFICATION; STOMACH; STOMACH CARCINOMA; STOMACH MUCOSA;

EID: 0042565882     PISSN: 10079327     EISSN: None     Source Type: Journal    
DOI: 10.3748/wjg.v9.i7.1439     Document Type: Article

References (45)

1. Park WS, Oh RR, Park JY, Yoo NJ, Lee SH, Shin MS, Kim SY, Kim YS, Lee JY, Kim HS, An WG, Lee JY. Mapping of a new target region of allelic loss at 21q22 in primary gastric cancers. Cancer Lett 2000; 159: 15-21
2. Kim HS, Woo DK, Bae SI, Kim YI, Kim WH. Allelotype of the adenoma-carcinoma sequence of the stomach. Cancer Detect Prev 2001; 25: 237-244
3. Baffa R, Santoro R, Bullrich F, Mandes B, Ishii H, Croce CM. Definition and refinement of chromosome 8p regions of loss of heterozygosity in gastric cancer. Clin Cancer Res 2000; 6: 1372-1377
4. Igarashi J, Nimura Y, Fujimori M, Mihara M, Adachi W, Kageyama H, Nakagawara A. Allelic loss of the region of chromosome 1p35-pter is associated with progression of human gastric carcinoma. Jpn J Cancer Res 2000; 91: 797-801
5. Wang Q, Chen H, Bai J, Wang B, Wang K, Gao H, Wang Z, Wang S, Zhang Q, Fu S. Analysis of loss of heterozygosity on 19p in primary gastric cancer. Zhonghua Yixue Yichuanxue Zazhi 2001; 18: 459-461
6. Sud R, Wells D, Talbot IC, Delhanty JD. Genetic alterations in gastric cancers from British patients. Cancer Genet Cytogenet 2001; 126: 111-119
7. Chung YJ, Choi JR, Park SW, Kim KM, Rhyu MG. Evidence for two modes of allelic loss: Multifocal analysis on both early and advanced gastric carcinomas. Virchows Arch 2001; 438: 31-38
8. Han HS, Kim HS, Woo DK, Kim WH, Kim YI. Loss of heterozygosity in gastric neuroendocrine tumor. Anticancer Res 2000; 20: 2849-2854
9. Nishioka N, Yashiro M, Inoue T, Matsuoka T, Ohira M, Chung KH. A candidate tumor suppressor locus for scirrhous gastric cancer at chromosome 18q 12.2. Int J Oncol 2001; 18: 317-322
10. Diatchenko L, Lau YF, Campbell AP, Chenchik A, Moqadam F, Huang B, Lukyanov S, Lukyanov K, Gurskaya N, Sverdlov ED, Siebert PD. Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci USA 1996; 93: 6025-6030
11. Yoshikawa Y, Mukai H, Hino F, Asada K, Kato I. Isolation of two novel genes, down-regulated in gastric cancer. Jpn J Cancer Res 2000; 91: 459-463
12. Nagasaki K, Manabe T, Hanzawa H, Maass N, Tsukada T, Yamaguchi K. Identification of a novel gene, LDOC1, down-regulated in cancer cell lines. Cancer Lett 1999; 140: 227-234
13. Jung MH, Kim SC, Jeon GA, Kim SH, Kim Y, Choi KS, Park SI, Joe MK, Kimm K. Identification of differentially expressed genes in normal and tumor human gastric tissue. Genomics 2000; 69: 281-286
14. Wang B, Shi LC, Zhang WB, Xiao CM, Wu JF, Dong YM. Expression and significance of P16 gene in gastric cancer and its precancerous lesions. Shijie Huaren Xiaohua Zazhi 2001; 9: 39-42
15. Wang RQ, Fang DC, Liu WW. MUC2 gene expression in gastric cancer and preneoplastic lesion tissues. Shijie Huaren Xiaohua Zazhi 2000; 8: 285-288
16. Machado JC, Oliveira C, Carvalho R, Soares P, Berx G, Caldas C, Seruca R, Carneiro F, Sobrinho-Simoes M. E-cadherin gene (CDH1) promoter methylation as the second hit in sporadic diffuse gastric carcinoma. Oncogene 2001; 20: 1525-1528
17. Liu HF, Liu WW, Fang DC, Yang SM, Wang RQ. Bax gene expression and its relationship with apoptosis in human gastric carcinoma and precancerous lesions. Shijie Huaren Xiaohua Zazhi 2000; 8: 665-668
18. He XS, Su Q, Chen ZC, He XT, Long ZF, Ling H, Zhang LR. Expression, deletion [was deleton] and mutation of p16 gene in human gastric cancer. World J Gastroenterol 2001; 7: 515-521
19. Liu DH, Zhang XY, Fan DM, Huang YX, Zhang JS, Huang WQ, Zhang YQ, Huang QS, Ma WY, Chai YB, Jin M. Expression of vascular endothelial growth factor and its role in oncogenesis of human gastric carcinoma. World J Gastroenterol 2001; 7: 500-505
20. 15 mRNA and its protein expression and gastric carcinoma invasion. Shijie Huaren Xiaohua Zazhi 2000; 8: 851-854
21. Endo K, Maejara U, Baba H, Tokunaga E, Koga T, Ikeda Y, Toh Y, Kohnoe S, Okamura T, Nakajima M, Sugimachi K. Heparanase gene expression and metastatic potential in human gastric cancer. Anticancer Res 2001; 21: 3365-3369
22. Nesi G, Palli D, Pernice LM, Saieva C, Paglierani M, Kroning KC, Catarzi S, Rubio CA, Amorosi A. Expression of nm23 gene in gastric cancer is associated with a poor 5-year survival. Anticancer Res 2001; 21: 3643-3549
23. Murahashi K, Yashiro M, Takenaka C, Matsuoka T, Ohira M, Chung KH. Establishment of a new scirrhous gastric cancer cell line with loss of heterozygosity at E-cadherin locus. Int J Oncol 2001; 19: 1029-1033
24. Wang CD, Chen YL, Wu T, Liu YR. Association between lower expression of somatostatin receptor II gene and lymphoid metastasis in patients with gastric cancer. Shijie Huaren Xiaohua Zazhi 1999; 7: 864-866
25. Yamamoto M, Tsukamoto T, Sakai H, Shirai N, Ohgaki H, Furihata C, Donehower LA, Yoshida K, Tatematsu M. p53 knockout mice (-/-) are more susceptible than (+/-) or (+/+) mice to N-methyl-N-nitrosourea stomach carcinogenesis. Carcinogenesis 2000; 21: 1891-1897
26. Xu X, Brodie SG, Yang X, Im YH, Parks WT, Chen L, Zhou YX, Weinstein M, Kim SJ, Deng CX. Haploid loss of the tumor suppressor Smad4/Dpc4 initiates gastric polyposis and cancer in mice. Oncogene 2000; 19: 1868-1874
27. Osherov N, Mathew J, Romans A, May GS. Identification of conidial-enriched transcripts in Aspergillus nidulans using suppression subtractive hybridization. Fungal Genetr Biol 2002; 37: 197-204
28. Petersen S, Petersen I. Expression profiling of lung cancer based on suppression subtraction hybridization (SSH). Methods Mol Med 2003; 75: 189-207
29. Liu ZW, Zhao MJ, Li ZP. Identification of up-regulated genes in rat regenerating liver tissue by suppression subtractive hybridization. Shenwu Huaxue Yu Shengwu Wuli Xuebao (Shanghai) 2001; 33: 191-197
30. Ji W, Wright MB, Cai L, Flament A, Lindpaintner K. Efficacy of SSH PCR in isolating differentially expressed genes. BMC Genomics 2002; 3: 12-14
31. Shridhar V, Sen A, Chien J Staub J, Avula R, Kovats S, Lee J, Lillie J, Smith DI. Identification of underexpressed genes in early- and late-stage primary ovarian tumors by suppression subtraction hybridization. Cancer Res 2002; 62: 262-270
32. Tanaka F, Hori N, Sato K. Identification of differentially expressed genes in rat hepatoma cell lines using subtraction and microarray. J Biochem (Tokyo) 2002; 131: 39-44
33. Lin S, Chugh S, Pan X, Wallner EI, Wada J, Kanwar YS. Identification of up-regulated Ras-like GTPase, Rap1b, by suppression subtractive hybridization. Kidney Int 2001; 60: 2129-2141
34. Majda BT, Meloni BP, Rixon N, Knuckey NW. Suppression subtraction by hybridization and northern analysis reveal upregulation of heat shock, trkB, and sodium calcium exchanger genes following global cerebral ischemia in the rat. Brain Res Mol Brain Res 2001; 93: 173-179
35. Shi J, Cai W, Chen X, Ying K, Zhang K, Xie Y. Identification of dopamine responsive mRNAs in glial cells by suppression subtractive hybridization. Brain Res 2001; 910: 29-37
36. Wang X, Feuerstein GZ. Suppression subtractive hybridisation: Application in the discovery of novel pharmacological targets. Pharmacogenomics 2000; 1: 101-108
37. Dey R, Son HH, Cho MI. Isolation and partial sequencing of potentially odontoblast-specific/enriched rat cDNA clones obtained by suppression subtractive hybridization. Arch Oral Biol 2001; 46: 249-260
38. Ye Z, Connor JR. Identification of iron responsive genes by screening cDNA libraries from suppression subtractive hybridization with antisense probes from three iron conditions. Nucleic Acids Res 2000; 28: 1802-1807
39. Kim JY, Chung YS, Paek KH, Park YI, Kim JK, Yu SN, Oh BJ, Shin JS. Isolation and characterization of a cDNA encoding the cysteine proteinase inhibitor, induced upon flower maturation in carnation using suppression subtractive hybridization. Mol Cells 1999; 9: 392-397
40. Diatchenko L, Lukyanov S, Lau YF, Siebert PD. Suppression subtractive hybridization: A versatile method for identifying differentially expressed genes. Methods Enzymol 1999; 303: 349-380
41. Fang J, Shi GP, Vaghy PL. Identification of the increased expression of monocyte chemoattractant protein-1, cathepsin S, UPIX-1, and other genes in dystrophin-deficient mouse muscles by suppression subtractive hybridization. J Cell Biochem 2000; 79: 164-172
42. Zhang L, Cilley RE, Chinoy MR. Suppression subtractive hybridization to identify gene expressions in variant and classic small cell lung cancer cell lines. J Surg Res 2000; 93: 108-119
43. Chim SS, Cheung SS, Tsui SK. Differential gene expression of rat neonatal heart analyzed by suppression subtractive hybridization and expressed sequence tag sequencing. J Cell Biochem 2000; 80: 24-36
44. Porkka KP, Visakorpi T. Detection of differentially expressed genes in prostate cancer by combining suppression subtractive hybridization and cDNA library array. J Pathol 2001; 193: 73-79
45. Villalva C, Trempat P, Zenou RC, Delsol G, Brousset P. Gene expression profiling by suppression subtractive hybridization (SSH): A example for its application to the study of lymphomas. Bull Cancer 2001; 88: 315-319