A rhamnogalacturonan lyase in the Clostridium cellulolyticum cellulosome

Journal of Bacteriology

Volumn 185, Issue 16, 2003, Pages 4727-4733

  Pagès, Sandrine ^a,b,c   Valette, Odile ^a   Abdou, Laetitia ^a,b   Bélaïch, Anne ^a   Bélaïch, Jean Pierre ^a,b  

^a AIX MARSEILLE UNIVERSITÉ   (France)

^b AIX MARSEILLE UNIVERSITY   (France)

^c CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; CELLULOSE; COHESIN; DOCKERIN; GALACTAN; GALACTURONASE; GALACTURONIC ACID; LYASE; POLYGALACTURONASE; POLYSACCHARIDE; PROTEIN RGL11Y; RHAMNOGALACTURONAN I; RHAMNOGALACTURONAN LYASE; RHAMNOGALACTURONASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CEL9M GENE; CELL WALL; CLOSTRIDIUM CELLULOLYTICUM; COMPLEX FORMATION; DEGRADATION; DOWNSTREAM PROCESSING; ELIMINATION REACTION; ENZYME ANALYSIS; ENZYME RELEASE; GENE CLUSTER; GENE ISOLATION; GENE LOCATION; GENETIC RECOMBINATION; NONHUMAN; OPEN READING FRAME; PH MEASUREMENT; PLANT; POTATO; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CLOSTRIDIUM; MOLECULAR SEQUENCE DATA; MULTIENZYME COMPLEXES; PECTINS; POLYSACCHARIDE-LYASES; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); CLOSTRIDIUM; CLOSTRIDIUM CELLULOLYTICUM; POSIBACTERIA; SOLANUM TUBEROSUM;

EID: 0042561878     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.16.4727-4733.2003     Document Type: Article

References (39)

1. Bagnara-Tardif, C., C. Gaudin, A. Bélaïch, P. Hoest, T. Citard, and J. P. Bélaïch. 1992. Sequence analysis of a gene cluster encoding cellulases from Clostridium cellulolyticum. Gene 119:17-28.
2. Bayer, E. A., L. J. Shimon, Y. Shoham, and R. Lamed. 1998. Cellulosomes-structure and ultrastructure. J. Struct. Biol. 124:221-234.
3. Bélaïch, A., G. Parsiegla, L. Gal, C. Villard, R. Haser, and J. P. Bélaïch. 2002. Cel9M, a new family 9 cellulase of the Clostridium cellulolyticum cellulosome. J. Bacteriol. 184:1378-1384.
4. Bélaïch, J. P., C. Tardif, A. Bélaïch, and C. Gaudin. 1997. The cellulolytic system of Clostridium cellulolyticum. J. Biotechnol. 57:3-14.
5. Blackwell, J. R., and R. Horgan. 1991. A novel strategy for production of a highly expressed recombinant protein in an active form. FEBS Lett. 295:10-12.
6. Blum, D. L., I. A. Kataeva, X. L. Li, and L. G. Ljungdahl. 2000. Feruloyl esterase activity of the Clostridium thermocellum cellulosome can be attributed to previously unknown domains of XynY and XynZ. J. Bacteriol. 182:1346-1351.
7. Brown, I. E., M. H. Mallen, S. J. Charnock, G. J. Davies, and G. W. Black. 2001. Pectate lyase 10A from Pseudomonas cellulosa is a modular enzyme containing a family 2a carbohydrate binding module. Biochem. J. 355:155-165.
8. Doi, R. H., and Y. Tamaru. 2001. The Clostridium cellulovorans cellulosome: an enzyme complex with plant cell wall degrading activity. Chem. Rec. 1:24-32.
9. Edashige, Y., and T. Ishii. 1997. Rhamnogalacturonan I from xylem differentiating zones of Cryptomeria japonica. Carbohydr. Res. 304:357-365.
10. Edashige, Y., and T. Ishii. 1998. Rhamnogalacturonan II from cell walls of Cryptomeria japonica. Phytochemistry 49:681-690.
11. Fernandes, A. C., C. M. Fontes, H. J. Gilbert, G. P. Hazlewood, T. H. Fernandes, and L. M. Ferreira. 1999. Homologous xylanases from Clostridium thermocellum: evidence for bi-functional activity, synergism between xylanase catalytic modules and the presence of xylan-binding domains in enzyme complexes. Biochem. J. 342:105-110.
12. Fierobe, H. P., C. Bagnara-Tardif, C. Gaudin, F. Guerlesquin, P. Sauve, A. Bélaïch, and J. P. Bélaïch. 1993. Purification and characterization of endoglucanase C from Clostridium cellulolyticum. Catalytic comparison with endoglucanase A. Eur. J. Biochem. 217:557-565.
13. Fierobe, H. P., S. Pagès, A. Bélaïch, S. Champ, D. Lexa, and J. P. Bélaïch. 1999. Cellulosome from Clostridium cellulolyticum: molecular study of the Dockerin/Cohesin interaction. Biochemistry 38:12822-12832.
14. Gal, L., C. Gaudin, A. Bélaïch, S. Pagès, C. Tardif, and J. P. Bélaïch, 1997. CelG from Clostridium cellulolyticum: a multidomain endoglucanase acting efficiently on crystalline cellulose. J. Bacteriol. 179:6595-6601.
15. Gal, L., S. Pagès, C. Gaudin, A. Bélaïch, C. Reverbel-Leroy, C. Tardif, and J. P. Bélaïch. 1997. Characterization of the cellulolytic complex (cellulosome) produced by Clostridium cellulolyticum. Appl. Environ. Microbiol. 63:903-909.
16. Gaudin, C., A. Bélaïch, S. Champ, and J. P. Bélaïch. 2000. CelE, a multidomain cellulase from Clostridium cellulolyticum: a key enzyme in the cellulosome? J. Bacteriol. 182:1910-1915.
17. Halstead, J. R., P. E. Vercoe, H. J. Gilbert, K. Davidson, and G. P. Hazlewood. 1999. A family 26 mannanase produced by Clostridium thermocellum as a component of the cellulosome contains a domain which is conserved in mannanases from anaerobic fungi. Microbiology 145:3101-3108.
18. Hayashi, H., K. I. Takagi, M. Fukumura, T. Kimura, S. Karita, K. Sakka, and K. Ohmiya. 1997. Sequence of xynC and properties of XynC, a major component of the Clostridium thermocellum cellulosome. J. Bacteriol. 179:4246-4253.
19. Hayashi, H., M. Takehara, T. Hattori, T. Kimura, S. Karita, K. Sakka, and K. Ohmiya. 1999. Nucleotide sequences of two contiguous and highly homologous xylanase genes xynA and xynB and characterization of XynA from Clostridium thermocellum. Appl. Microbiol. Biotechnol. 51:348-357.
20. Kempf, B., and E. Bremer. 1998. Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments. Arch. Microbiol. 170:319-330.
21. Kilstrup, M., S. Jacobsen, K. Hammer, and F. K. Vogensen. 1997. Induction of heat shock proteins DnaK, GroEL, and GroES by salt stress in Lactococcus lactis. Appl. Environ. Microbiol. 63:1826-1837.
22. Kim, H., K. H. Jung, and M. Y. Pack. 2000. Molecular characterization of xynX, a gene encoding a multidomain xylanase with a thermostabilizing domain from Clostridium thermocellum. Appl. Microbiol. Biotechnol. 54:521-527.
23. Kosugi, A., K. Murashima, and R. H. Doi. 2001. Characterization of xylanolytic enzymes in Clostridium cellulovorans: expression of xylanase activity dependent on growth substrates. J. Bacteriol. 183:7037-7043.
24. Kurokawa, J., E. Hemjinda, T. Arai, S. Karita, T. Kimura, K. Sakka, and K. Ohmiya. 2001. Sequence of the Clostridium thermocellum mannanase gene man26B and characterization of the translated product. Biosci. Biotechnol. Biochem. 65:548-554.
25. McKie, V. A., J. P. Vincken, A. G. Voragen, L. A. van den Broek, E. Stimson, and H. J. Gilbert. 2001. A new family of rhamnogalacturonan lyases contains an enzyme that binds to cellulose. Biochem. J. 355:167-177.
26. Mechaly, A., H. P. Fierobe, A. Bélaïch, J. P. Bélaïch, R. Lamed, Y. Shoham, and E. A Bayer. 2001. Cohesin-dockerin interaction in cellulosome assembly: a single hydroxyl group of a dockerin domain distinguishes between nonrecognition and high affinity recognition. J. Biol. Chem. 276:9883-9888.
27. Mohand-Oussaid, O., S. Payot, E. Guedon, E. Gelhaye, A. Youyou, and H. Petitdemange. 1999. The extracellular xylan degradative system in Clostridium cellulolyticum cultivated on xylan: evidence for cell-free cellulosome production. J. Bacteriol. 181:4035-4040.
28. Murashima, K., A. Kosugi, and R. H. Doi. 2002. Determination of subunit composition of Clostridium cellulovorans cellulosomes that degrade plant cell walls. Appl. Environ. Microbiol. 68:1610-1615.
29. Mutter, M., I. J. Colquhoun, G. Beldman, H. A. Schols, E. J. Bakx, and A. G. J. Voragen. 1998. Characterization of recombinant rhamnogalacturonan α-1-rhamnopyranosyl-(1, 4)-α-D-galactopyranosyluronide lyase from Aspergillus aculeatus. Plant Physiol. 117:141-152.
30. Pagès, S., A. Bélaïch, J. P. Bélaïch, E. Morag, R. Lamed, Y. Shoham, and E. A. Bayer. 1997. Species-specificity of the cohesin-dockerin interaction between Clostridium thermocellum and Clostridium cellulolyticum: prediction of specificity determinants of the dockerin domain. Proteins 29:517-527.
31. Pagès, S., A. Bélaïch, H. P. Fierobe, C. Tardif, C. Gaudin, and J. P. Bélaïch. 1999. Sequence analysis of scaffolding protein CipC and ORFXp, a new cohesin-containing protein in Clostridium cellulolyticum: comparison of various cohesin domains and subcellular localization of ORFXp. J. Bacteriol. 181:1801-1810.
32. Pagès, S., A. Bélaïch, C. Tardif, C. Reverbel-Leroy, C. Gaudin, and J. P. Bélaïch. 1996. Interaction between the endoglucanase CelA and the scaffolding protein CipC of the Clostridium cellulolyticum cellulosome. J. Bacteriol. 178:2279-2286.
33. Park, J. S., Y. Matano, and R. H. Doi. 2001. Cohesin-dockerin interactions of cellulosomal subunits of Clostridium cellulovorans. J. Bacteriol. 183:5431-5435.
34. Reverbel-Leroy, C., S. Pagès, A. Bélaïch, J. P. Bélaïch and C. Tardif. 1997. The processive endocellulase CelF, a major component of the Clostridium cellulolyticum cellulosome: purification and characterization of the recombinant form. J. Bacteriol. 179:46-52.
35. Ridley, B. L., M. A. O'Neill, and D. Mohnen. 2001. Pectins: structure, biosynthesis, and oligogalacturonide-related signaling. Phytochemistry 57:929-967.
36. Schwarz, W. H. 2001. The cellulosome and cellulose degradation by anaerobic bacteria. Appl. Microbiol. Biotechnol. 56:634-649.
37. Tamaru, Y., and R. H. Doi. 2001. Pectate lyase A, an enzymatic subunit of the Clostridium cellulovorans cellulosome. Proc. Natl. Acad. Sci. USA 98:4125-4129.
38. Tamaru, Y., S. Karita, A. Ibrahim, H. Chan, and R. H. Doi. 2000. A large gene cluster for the Clostridium cellulovorans cellulosome. J. Bacteriol. 182:5906-5910.
39. Zverlov, V., K. P. Fuchs, and W. H. Schwarz. 2002. Chi18A, the endochitinase in the cellulosome of the thermophilic, cellulolytic bacterium Clostridium thermocellum. Appl. Environ. Microbiol. 68:3176-3179.