The origin of human chromosome 1 and its homologs in placental mammals

Genome Research

Volumn 13, Issue 8, 2003, Pages 1880-1888

  Murphy, William J ^a   Frönicke, Lutz ^a   O'Brien, Stephen J ^a   Stanyon, Roscoe ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CARNIVORE; CETACEA; CHROMOSOME 1; CHROMOSOME ARM; CHROMOSOME BREAKAGE; CHROMOSOME IDENTIFICATION; CHROMOSOME PAINTING; CHROMOSOME TRANSLOCATION; CLADISTICS; CONTROLLED STUDY; GENE CLUSTER; GENE MAPPING; GENE ORDER; GENETIC LINE; GENETIC VARIABILITY; GENOME ANALYSIS; HUMAN; MOLECULAR EVOLUTION; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLACENTAL MAMMALS; PLESIOMORPHY; PRIMATE; PRIORITY JOURNAL; RAT; RODENT; SEQUENCE HOMOLOGY; SLOTH; SPECIES DIFFERENCE; SYNTENY; TAXONOMIC RANK;

CETACEA; EDENTATA; EUTHERIA; MAMMALIA; MEGALONYCHIDAE; PRIMATES; RODENTIA;

EID: 0042525766     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.1022303     Document Type: Article

References (39)

1. Arnason, U. 1972. The role of chromosomal rearrangements in mammalian speciation with special reference to cetacea and pinnipedia. Hereditas 70: 113-118.
2. Azzalin, C.M., Nergadze, S.G., and Giulotto, E. 2001. Human intrachromosomal telomeric-like repeats: Sequence organization and mechanisms of origin. Chromosoma 110: 75-82.
3. Bailey, J.A., Gu, Z., Clark, R.A., Reinert, K., Samonte, R.V., Schwartz, S., Adams, M.D., Myers, E.W., Li, P.W. and Eichler, E.E. 2002. Recent segmental duplications in the human genome. Science 297: 1003-1007.
4. Band, M.R., Larson, J.H., Rebeiz, M., Green, C.A., Heyen, D.W., Donovan, J., Windish, R., Steining, C., Mahyuddin, P., Womack, J.E., et al. 2000. An ordered comparative map of the cattle and human genomes. Genome Res. 10: 1359-1368.
5. Bielec, P.E., Gallagher, D.S., Womack, J.E., and Busbee, D.L. 1998. Homologies between human and dolphin chromosomes detected by heterologous chromosome painting. Cytogenet. Cell. Genet. 81: 18-25.
6. Boehnke, M., Lange, K., and Cox, D.R. 1991. Statistical methods for multipoint radiation hybrid mapping. Am. J. Hum. Genet. 49: 1174-1188.
7. Breen, M., Thomas, R., Binns, M.M., Carter, N.P., and Langford, C.F. 1999. Reciprocal chromosome painting reveals detailed regions of conserved synteny between the karyotypes of the domestic dog (Canis familiaris) and human. Genomics 15: 145-155.
8. Burt, D.W., Bruley, C., Dunn, I.C., Jones, C.T., Ramage, A., Law, A.S., Morrice, D.R., Paton, I.R., Smith, J., Windsor, D., et al. 1999. The dynamics of chromosome evolution in birds and mammals. Nature 402: 411-413.
9. Chowdhary, B.P., Raudsepp, T., Fronicke, L., and Scherthan, H. 1998. Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH. Genome Res. 8: 577-589.
10. Frönicke L. and Wienberg, J. 2001. Comparative chromosome painting defines the high rate of karyotype changes between pigs and bovids. Mamm. Genome 12: 442-449.
11. Frönicke, L., Chowdhary, B.P., Scherthan, H., and Gustavsson, I. 1996. A comparative map of the porcine and human genomes demonstrates Zoo-FISH and gene mapping-based chromosomal homologies. Mamm. Genome 7: 285-290.
12. Glas, R., Wakefield, M.J., Toder, R., and Graves, J.A.M. 1998. Comparative chromosome painting. ILAR J. 39: wall chart.
13. Goureau, A., Yerle, M., Schmitz, A., Riquet, J., Milan, D., Pinton, P., Frelat, G., and Gellin, J. 1996. Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 36: 252-262.
14. Jiang, Z., Priat, C., and Galibert, F. 1998. Traced orthologous amplified sequence tags (TOASTs) and mammalian comparative maps. Mamm Genome 9: 577-587.
15. Korstanje, R., O'Brien, P.C., Yang, F., Rens, W., Bosma, A.A., van Lith, H.A., van Zutphen, L.F., and Ferguson-Smith, M.A. 1999. Complete homology maps of the rabbit (Oryctolagus cuniculus) and human by reciprocal chromosome painting. Cytogenet. Cell. Genet. 86: 317-322.
16. Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
17. Madsen, O., Scally, M., Douady, C.J., Kao, D.J., DeBry, R., Adkins, R., Amrine, H.M., Stanhope, M.J., deJong, W.W., and Springer, M.S. 2001. Parallel adaptive radiations in two clades of placental mammals. Nature 409: 610-614.
18. Muller, S., Stanyon, R., O'Brien, P.C., Ferguson-Smith, M.A., Plesker, R., and Wienberg, J. 1999. Defining the ancestral karyotype of all primates by multidirectional chromosome painting between tree shrews, lemurs and humans. Chromosoma 108: 393-400.
19. Murphy, W.J., Menotti-Raymond, M., Lyons, L.A., Thompson, M.A., and O'Brien, S.J. 1999a. Development of a feline whole genome radiation hybrid panel and comparative mapping of human chromosome 12 and 22 loci. Genomics 57: 1-8.
20. Murphy, W.J., Sun, S., Chen, Z.Q., Pecon-Slattery, J., and O'Brien, S.J. 1999b. Extensive conservation of sex chromosome organization between cat and human. Genome Res. 9: 1223-1230.
21. Murphy, W.J., Sun, S., Chen, Z.Q., Yuhki, N., Hirschmann, D., Menotti-Raymond, M. and O'Brien, S.J. 2000. A radiation hybrid map of the cat genome: Implications for comparative mapping. Genome Res. 10: 691-702.
22. Murphy, W.J., Eizirik, E., Johnson, W.E., Zhang, Y.-P., Ryder, O.A., and O'Brien, S.J. 2001a. Molecular phylogenetics and the origins of placental mammals. Nature 409: 614-618.
23. Murphy, W.J., Eizirik, E., O'Brien, S.J., Madsen, O., Scally, M., Douady, C.J., Teeling, E., Ryder, O.A., Stanhope, M.J., de Jong, W.W., et al. 2001b. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294: 2348-2351.
24. Murphy, W.J., Stanyon, R., and O'Brien, S.J. 2001c. Evolution of mammalian genome organization revealed by comparative gene mapping. Genome Biol. 2: 0.0005-0.0008.
25. O'Brien, S.J. and Stanyon, R. 1999. Phylogenomics. Ancestral primate viewed. Nature 402: 365-366.
26. O'Brien, S.J., Menotti-Raymond, M., Murphy, W.J., Nash, W.G., Wienberg, J., Stanyon, R., Copeland, N.G., Jenkins, N.A., Womack, J.E., and Marshall Graves, J.A. 1999. The promise of comparative genomics in mammals. Science 286: 458-481.
27. Rettenberger, G., Klett, C., Zechner, U., Kunz, J., Vogel, W., and Hameister, H. 1995. Visualization of the conservation of synteny between humans and pigs by heterologous chromosomal painting. Genomics 26: 372-378.
28. Ruiz-Herrera, A., Garcia, F., Azzalin, C., Giulotto, E., Egozcue, J., Ponsa, M., and Garcia, M. 2002. Distribution of intrachromosomal telomeric sequences (ITS) on Macaca fascicularis (Primates) chromosomes and their implication for chromosome evolution. Hum. Genet. 110: 578-586.
29. Scherthan, H., Cremer, T., Arnason, U., Weier, H.-U., Lima-de-Faria, A., and Frönicke, L. 1994. Comparative chromosome painting discloses homologous segments in distantly related mammals. Nature Genet. 6: 342-347.
30. Sun, H.S., Tuggle, C.K., Goureau, A., Fitzsimmons, C.J., Pinton, P., Chardon, P., and Yerle, M. 2002. Precise mapping of breakpoints in conserved synteny between human chromosome 1 and pig chromosomes 4, 6 and 9. Anim. Genet. 33: 91-96.
31. Telenius, H., Pelmear, A.H., Tunnacliffe, A., Carter, N.P., Behmel, A., Ferguson-Smith, M.A., Nordenskjold, M., Pfragner, R., and Ponder, B.A. 1992. Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes. Genes Chromosomes Cancer 4: 257-263.
32. Vallente Samonte, R. and Eichler, E.E. 2002. Segmental duplications and the evolution of the primate genome. Nat. Rev. Genet. 3: 65-72.
33. Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., et al. 2001. The sequence of the human genome. Science 291: 1304-1351.
34. Watanabe, T.K., Bihoreau, M.T., McCarthy, L.C., Kiguwa, S.L., Hishigaki, H., Tsuji, A., Browne, J., Yamasaki, Y., Mizoguchi-Miyakita, A., Oga, K. et al. 1999. A radiation hybrid map of the rat genome containing 5,255 markers. Nat. Genet. 22: 27-36.
35. Wichman, H.A., Payne, C.T., Ryder, O.A., Hamilton, M.J., Maltbie, M., and Baker, R.J. 1991. Genomic distribution of heterochromatic sequences in equids: Implications to rapid chromosomal evolution. J. Hered. 82: 369-377.
36. Wienberg, J., Stanyon, R., Nash, W.G., O'Brien, P.C., Yang, F., O'Brien, S.J., and Ferguson-Smith, M.A. 1997. Conservation of human vs. feline genome organization revealed by reciprocal chromosome painting. Cytogenet. Cell. Genet. 77: 211-217.
37. Wienberg, J., Froenicke, L., and Stanyon, R. 2000. Insights into mammalian genome organization and evolution by molecular cytogenetics. In Comparative genomics. (ed. M.S., Clark),, pp. 207-244. Kluwer Academic Publishers, Boston, MA.
38. Yang, F., Graphodatsky, A.S., O'Brien, P.C.M., Colabella, A., Solanky, N., Squire, M., Sargan, D.R., and Ferguson-Smith, M.A. 2000. Reciprocal chromosome painting illuminates the history of genome evolution of the domestic cat, dog and human. Chromosome Res. 8: 393-404.
39. Yang, F., Alkalaeva, E.Z., Perelman, P.L., Pardini, A.T., Harrison, W.R., O'Brien, P.C.M., Fu, B., Graphodatsky, A.S., and Ferguson-Smith, M.A. 2003. Reciprocal chromosome painting among human, aardvark and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype. Proc. Natl. Acad. Sci. 100: 1062-1066.