Reciprocal chromosome painting reveals detailed regions of conserved synteny between the karyotypes of the domestic dog (Canis familiaris) and human

Genomics

Volumn 61, Issue 2, 1999, Pages 145-155

  Breen, Matthew ^a   Thomas, Rachael ^a,b   Binns, Matthew M ^a   Carter, Nigel P ^c   Langford, Cordelia F ^c  

^a ANIMAL HEALTH TRUST   (United Kingdom)

^b UNIVERSITY OF LEICESTER   (United Kingdom)

^c WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME PAINTING; DOG; FLUORESCENCE IN SITU HYBRIDIZATION; GENE AMPLIFICATION; GENE MAPPING; GENOME; HUMAN; KARYOTYPE; METAPHASE CHROMOSOME; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

CANIS FAMILIARIS; CANIS LUPUS; MAMMALIA;

EID: 0033569332     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1999.5947     Document Type: Article

References (53)

1. Acland G. M., Ray K., Mellersh C. S., Gu W., Langston A. A., Rine J., Ostrander E. A., Aguirre G. D. Linkage analysis and comparative mapping of canine progressive rod-cone degeneration (prcd) establishes potential locus homology with retinitis pigmentosa (RP17) in humans. Proc. Natl. Acad. Sci. USA. 95:1998;3048-3053.
2. Breen, M, Reimann, N, Bosma, A. A. (Coordinator), Landon, D, Zijlstra, S, Bartnitzke, S, Switonski, M, Long, S. E, de Haan, N. A, Binns, M. M, Bullerdiek, J, and, Langford, C. F. 1998, Standardisation of the chromosome nos. 22-38 of the dog (Canis familiaris) with the use of chromosome painting probes, In, Proceedings of the 13th European Colloquium on Cytogenetics of Domestic Animals, Budapest.
3. Breen M., Langford C. F., Carter N. P., Holmes N. G., Dickens H. F., Thomas R., Suter N., Ryder E. J., Pope M., Binns M. M. FISH mapping and identification of canine chromosomes. J. Hered. 90:1999a;27-30.
4. Breen M., Bullerdiek J., Langford C. F. The DAPI banded karyotype of the domestic dog (Canis familiaris) generated using chromosome-specific paint probes. Chromosome Res. 7:1999b;401-406.
5. Burt D. W., Cheng H. H. The chicken gene map. ILAR J. 39:1998;229-236.
6. Carter N. P. Chromosome painting using degenerate oligonucleotide-primed polymerase chain reaction-amplified flow sorted human chromosomes. Celis J. E. Cell Biology: A Laboratory Handbook. 1994;442-449 Academic Press, San Diego.
7. Carter N. P., Ferguson-Smith M. A., Perryman M. T., Telenius H., Pelmear A. H., Leversha M. A., Glancy M. T., Wood S. L., Cook K., Dyson H. M., Ferguson-Smith M. M., Willatt L. R. Reverse chromosome painting: A method for the rapid analysis of aberrant chromosomes in clinical cytogenetics. J. Med. Genet. 29:1992;299-307.
8. Chowdhary B. P., Frönicke L., Gustavsson I., Scherthan H. Comparative analysis of the cattle and human genomes: Detection of Zoo-FISH and gene mapping-based chromosomal homologies. Mamm. Genome. 7:1996;297-302.
9. Copeland N. G., Jenkins N. A., Gilbert D. J., Eppig J. T., Maltais L. J., Miller J. C., Dietrich W. F., Weaver A., Lincoln S. E., Steen R. G., Stein L. D., Nadeau J. H., Lander E. S. A genetic linkage map of the mouse: Current applications and future prospects. Science. 262:1993;57-66.
10. de la Chapelle A. Disease gene mapping in isolated human populations: The example of Finland. J. Med. Genet. 30:1993;857-865.
11. Deloukas P., Schuler G. D., Gyapay G., Beasley E. M., Soderlund C., Rodriguez-Tomé P., Hui L., Matise T. C., McKusick K. B., Beckmann J. S., Bentolila S., Bihoreau M., Birren B. B., Browne J., Butler A., Castle A. B., Chiannilkulchai N., Clee C., Day P. J., Dehejia A., Dibling T., Drouot N., Duprat S., Fizames C., Fox S., Gelling L., Green L., Harrison P., Hocking R., Holloway E., Hunt S., Keil S., Lijnzaad P., Louis-Dit-Sully C., Ma J., Mandis A., Miller J., Morissette J., Muselet D., Nusbaum H. C., Peck A., Rozen S., Simon D., Slonim D. K., Staples R., Stein L. D., Stewert E. A., Suchard M. A., Thangarajah T., Vega-Czarny N., Webber C., Wu X., Hudson J., Auffray Momura N., Sikela J. M., Polymeropoulos M. H., James M. R., Lander E. S., Hudson T. J., Myers R. M., Cox D. R., Weissenbach J., Boguski M. S., Bentley D. R. A physical map of 30,000 human genes. Science. 282:1998;744-746.
12. Dodds W. J. Hemostasis. Kaneko J. J. Clinical Biochemistry of Domestic Animals. 1989;282-315 Academic Press, San Diego.
13. Dutrillaux B., Couturier J. The ancestral karyotype of Carnivora: Comparison with that of platyrrhine monkeys. Cytogenet. Cell. Genet. 35:1983;200-208.
14. Ferguson-Smith M. A. Genetic analysis by chromosome sorting and painting: Phylogenetic and diagnostic applications. Eur. J. Hum. Genet. 5:1997;253-265.
15. Ferguson-Smith M. A., Yang F., O'Brien P. C. M. Comparative mapping using chromosome sorting and painting. ILAR J. 39:1998;68-76.
16. Francke U. Digitised and differentially shaded human chromosome idiograms for genomic applications. Cytogenet. Cell. Genet. 65:1994;206-219.
17. Frönicke L., Muller J., Romanakis N. K., Scherthan H. Chromosomal homeologies between human, harbor seal (Phoca vitulina) and the putative ancestral carnivore karyotype revealed by Zoo-FISH. Chromosoma. 106:1997;108-113.
18. Glas R., Wakefield M. J., Toder R., Graves J. A. M. Comparative chromosome painting (fold out poster). ILAR J. 39:1998.
19. Hameister H., Klett C. H., Bruch J., Dixkens C. H., Vogel W., Christensen K. Zoo-FISH analysis: The American mink (Mustela vison) closely resembles the cat karyotype. Chromosome Res. 5:1997;5-11.
20. Henthorn P. S., Somberg R. L., Fimiani V. M., Puck J. M., Patterson D. F., Felsburg P. J. IL-2Rγ gene microdeletion demonstrates that canine X-linked severe combine immunodeficiency is a homologue of human disease. Genomics. 23:1994;69-74.
21. Jauch A., Wienberg J., Stanyon R., Arnold N., Tofanelli S., Ishida T., Cremer T. Reconstruction of genomic rearrangements in great apes and gibbons by chromosome painting. Proc. Natl. Acad. Sci. USA. 89:1992;8611-8615.
22. Kadotani H., Faraco J., Mignot E. Genetic studies in the sleep disorder narcolepsy. Genome Res. 8:1998;427-434.
23. Langford C. F., Fischer P. E., Binns M. M., Holmes N. G., Carter N. P. Chromosome-specific paints from a high resolution flow karyotype of the dog. Chromosome Res. 4:1996;115-123.
24. Lingaas F., Sorensen A., Juneja R. K., Johansson S., Fredholm M., Wintero A. K., Sampson J., Mellersh C. S., Curzon A., Holmes N. G., Binns M. M., Dickens H. F., Ryder E. J., Gerlach J., Baumle E., Dolf G. Towards construction of a canine linkage map: Establishment of 16 linkage groups. Mamm. Genome. 8:1997;218-221.
25. Mellersh C. S., Langston A. A., Acland G. M., Fleming M. A., Ray K., Wiegand N. A., Fransisco L. V., Gibbs M., Aguirre G. D., Ostrander E. A. A linkage map of the canine genome. Genomics. 46:1998;326-336.
26. Menon K. P., Tieu P. T., Neufeld E. F. Architecture of the canine DUA gene and mutation underlying canine mucopolysaccharidosis. Genomics. 14:1992;763-768.
27. Nash W. G., Wienberg J., Ferguson-Smith M. A., Menninger J. C., O'Brien S. J. Comparative genomics: Tracking chromosome evolution in the family Ursidae using reciprocal chromosome painting. Cytogenet. Cell. Genet. 83:1998;182-192.
28. Neff M. W., Bromann K. W., Mellersh C. S., Ray K., Acland G. M., Aguirre G. D., Ziegle J. S., Ostrander E. A., Rine J. A second-generation genetic linkage map of the domestic dog, Canis familiaris. Genetics. 151:1999;803-820.
29. Nicholas, F. W, Brown, S. C, and, Le Tissier, P. R. 1998, Online Mendelian Inheritance in Animals, (URL, http://angis.su.oz.au/Databases/BIRX/omia/omia form.htnl , ).
30. Novacek M. J. Mammalian phylogeny: Shaking the tree. Nature. 356:1992;121-125.
31. Patterson D. F. Understanding and controlling inherited diseases in dogs and cats. Tijdschrift voor Diergeneeskunde. 118:1993;23S-27S.
32. Patterson D. F., Aguirre G. A., Fyfe J. C., Giger U., Green P. L., Haskins M. E., Jezyk P. F., Meyers-Wallen V. N., Schiffer S. P. Canine genetic disease information system. Am. Kennel Gazzette. 104:1987;58-61.
33. Postlethwaite J. H., Yan Y. L., Gates M. A., Horne S., Amores A., Brownlie A., Donovan A., Egan E. S., Force A., Gong Z., Goutel C., Fritz A., Kelsh R., Knapik E., Liao E., Paw B., Ransom D., Singer A., Thomson M., Abduljabbar T. S., Yelick P., Beier D., Joly J-S., Larhammar D., Rosa F., Westerfield M., Zon L. I., Johnson S. L., Talbot W. S. Vertebrate genome evolution and the zebrafish genetic map. Nat. Genet. 18:1998;345-349.
34. Priat C., Hitte C., Vignaux F., Renier C., Jiang Z., Jouquand S., Ceron A., Andre C., Galibert F. A whole-genome radiation hybrid map of the dog genome. Genomics. 54:1998;361-378.
35. Raudsepp T., Fronicke L., Scherthan H., Gustavsson I., Chowdhary B. P. Zoo-FISH delineates conserved chromosomal segments in horse and man. Chromosome Res. 4:1996;218-225.
36. Rettenberger G., Klett C., Zechner U., Bruch J., Just W., Vogel C., Hameister H. ZOO-FISH analysis: Cat and human karyotypes closely resemble the putative ancestral mammalian karyotype. Chromosome Res. 3:1995;479-486.
37. Robinson R. F. Genetic anomalies in dogs. Canine Practice. 16:1991;29-34.
38. Ross M. T., Langford C. F. The use of flow-sorted chromosomes in genome mapping. Dear P. H. Genome Mapping: A Practical Approach. 1997;165-184 Oxford Univ. Press, London.
39. Samollow P. B., Graves J. A. M. Gene maps of marsupials. ILAR J. 39:1998;203-224.
40. Scherthan H. T., Cremer U., Arnason H. U., Weier A., de Faria L., Frönicke L. Comparative chromosome painting discloses homologous segments in distantly related mammals. Nat. Genet. 6:1994;342-347.
41. Schuler G. D., Boguski M. S., Stewart E. A., Stein L. D., Gyapay G., Rice K., White R. E., Rodriguez Tome P., Aggarwal A., Bajorek E., Bentolila S., Birren B. B., Butler A., Castle A. B., Chiannilkulchai N., Chu A., Clee C., Cowles S., Day P. J., Dibling T., Drouot N., Dunham I., Duprat S., East C., Hudson T. J. A gene map of the human genome. Science. 274:1996;540-546.
42. Selden J. R., Moorhead P. S., Oehlert M. L., Patterson D. F. The giemsa banding pattern of the canine karyotype. Cytogenet. Cell Genet. 15:1975;380-387.
43. Sharp N. J. H., Kornegay J. N., van Camp S. D., Herbstreith H. H., Secore S. L., Kettle S., Hung W. Y., Constantinou C. D., Dykstra M. J., Roses A. D., Bartlett R. J. An error in dystrophin mRNA processing in golden retriever muscular dystrophy, an animal homologue of Duchenne muscular dystophy. Genomics. 13:1992;115-121.
44. Stolzfus L. J., Sosa-Pineda B., Moskowitz S. M., Menon K. P., Dlott B., Hooper L., Teplow D. B., Shull R. M., Neufeld E. F. Cloning and characterisation of cDNA encoding canine α-liduronidase. J. Biol. Chem. 267:1992;6570-6575.
45. Stone D. M., Jacky P. B., Prieur D. J. The giemsa banding pattern of canine chromosomes, using cell synchronization technique. Genome. 34:1991;407-412.
46. Switonski M., Reimann N., Bosma A. A., Long S., Bartnitzke S., Pieńkowska A., Mureno-Milan M. M., Fischer P. Report on the progress of standardization of the G-banded canine (Canis familiaris) karyotype. Chromosome Res. 4:1996;306-309.
47. Thomas R., Breen M., Langford C. F., Binns M. M. Zoo-FISH analysis of dog chromosome 5: Identification of conserved synteny with human and cat chromosomes. Cytogenet. Cell Genet. 1999.
48. Veske A., Nilsson S. E. G., Narfstrom K., Gal A. Retinal dystrophy of Swedish Briards/Briard-Beagle dogs is due to a 4-bp deletion in RPE65. Genomics. 57:1999;57-61.
49. Werner P., Raducha M. G., Prociuk U., Henthorn P. S., Patterson D. F. Physical and linkage mapping of human chromosome 17 loci to dog chromosomes 9 and 5. Genomics. 42:1997;74-82.
50. Wienberg J., Stanyon R., Jauch A., Cremer T. Homologies in human and Macaca fuscata chromosomes revealed by in situ suppression hybridisation with human chromosome specific DNA libraries. Chromosoma. 101:1992;265-270.
51. Wienberg J., Stanyon R., Nash W. G., O'Brien P., Yang F., O'Brien S. J., Ferguson-Smith J. A. Conservation of human vs. feline genome organisation revealed by reciprocal chromosome painting. Cytogenet. Cell. Genet. 77:1997;211-217.
52. Wilcox B., Walkowicz C. The Atlas of Dog Breeds of the World. 1993;T.F.H. Publications, Neptune City.
53. Zheng K., Thorner P. S., Marrano P., Baumal R., McInnes R. R. Canine X chromosome-linked hereditary nephritis: A genetic model for human X-linked hereditary nephritis resulting from a single base mutation in the gene encoding the α5 chain of collagen type IV. Proc. Natl. Acad. Sci. USA. 91:1994;3989-3993.