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Volumn 4, Issue 8, 1997, Pages 569-578

On the pairing rules for recognition in the minor groove of DNA by pyrrole-imidazole polyamides

Author keywords

Binary code; Gene regulation; Hydorgen bond; Molecular recognition

Indexed keywords


EID: 0031215078     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-5521(97)90243-X     Document Type: Article
Times cited : (169)

References (39)
  • 2
    • 0026661689 scopus 로고
    • Antiparallel side-by-side motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2-carboxamide netropsin
    • Mrksich, M., Wade, W.S., Dwyer, T.J., Geirstanger, B.H., Wemmer, D.E. & Dervan, P.B. (1992). Antiparallel side-by-side motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2-carboxamide netropsin. Proc. Natl Acad. Sci, USA 89, 7586-7590.
    • (1992) Proc. Natl Acad. Sci, USA , vol.89 , pp. 7586-7590
    • Mrksich, M.1    Wade, W.S.2    Dwyer, T.J.3    Geirstanger, B.H.4    Wemmer, D.E.5    Dervan, P.B.6
  • 3
    • 0027445693 scopus 로고
    • Binding affinities of synthetic peptides, pyridine-2-carboxamidenetropsin and 1-methylimidazole-2-carboxamidenetropsin, that form 2/1 complexes in the minor groove of double-helical DNA
    • Wade, W.S., Mrksich, M. & Dervan, P.B. (1993). Binding affinities of synthetic peptides, pyridine-2-carboxamidenetropsin and 1-methylimidazole-2-carboxamidenetropsin, that form 2/1 complexes in the minor groove of double-helical DNA. Biochemistry 32, 11385-11389.
    • (1993) Biochemistry , vol.32 , pp. 11385-11389
    • Wade, W.S.1    Mrksich, M.2    Dervan, P.B.3
  • 4
    • 0027276389 scopus 로고
    • Antiparallel side-by-side heterodimer for sequence-specific recognition in the minor groove of DNA by a distamycin 1-methylimidazole-2-carboxamide pair
    • Mrksich, M. & Dervan, P.B. (1993). Antiparallel side-by-side heterodimer for sequence-specific recognition in the minor groove of DNA by a distamycin 1-methylimidazole-2-carboxamide pair. J. Am. Chem. Soc. 115, 2572-2576.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 2572-2576
    • Mrksich, M.1    Dervan, P.B.2
  • 5
    • 0029786013 scopus 로고    scopus 로고
    • Recognition of DNA by designed ligands at subnanomolar concentrations
    • Trauger, J.W., Baird, E.E. & Dervan, P.B. (1996). Recognition of DNA by designed ligands at subnanomolar concentrations. Nature 382, 559-561.
    • (1996) Nature , vol.382 , pp. 559-561
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 8
    • 0028402160 scopus 로고
    • Binding of 2 distamycin-A molecules in the minor groove of an alternating B-DNA duplex
    • Chen, X., Ramakrishnan, B., Rao, S.T. & Sundaralingham, M. (1994). Binding of 2 distamycin-A molecules in the minor groove of an alternating B-DNA duplex. Nat. Struct. Biol. 1, 169-175.
    • (1994) Nat. Struct. Biol. , vol.1 , pp. 169-175
    • Chen, X.1    Ramakrishnan, B.2    Rao, S.T.3    Sundaralingham, M.4
  • 9
    • 0029662190 scopus 로고    scopus 로고
    • Effects of the A·T/T·A degeneracy of pyrrole-imidazole polyamide recognition in the minor groove of DNA
    • White, S, Baird, E.E. & Dervan, P.B. (1996). Effects of the A·T/T·A degeneracy of pyrrole-imidazole polyamide recognition in the minor groove of DNA. Biochemistry 35, 12532-12537.
    • (1996) Biochemistry , vol.35 , pp. 12532-12537
    • White, S.1    Baird, E.E.2    Dervan, P.B.3
  • 11
    • 0029776688 scopus 로고    scopus 로고
    • Binding of a hairpin polyamide in the minor groove of DNA: Sequence-specific enthalpic discrimination
    • Pilch, D.S., et al., & Dervan, P.B. (1996). Binding of a hairpin polyamide in the minor groove of DNA: sequence-specific enthalpic discrimination. Proc. Natl Acad. Sci. USA 93, 8306-8311.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 8306-8311
    • Pilch, D.S.1    Dervan, P.B.2
  • 12
    • 0028171224 scopus 로고
    • Design of a G·C-specific minor groove-binding peptide
    • Geierstanger, B.H., Mrksich, M., Dervan, P.B. & Wemmer, D.E. (1994). Design of a G·C-specific minor groove-binding peptide. Science 266, 646-650.
    • (1994) Science , vol.266 , pp. 646-650
    • Geierstanger, B.H.1    Mrksich, M.2    Dervan, P.B.3    Wemmer, D.E.4
  • 13
    • 0019331504 scopus 로고
    • Crystal structure analysis of a complete turn of DNA
    • Wing, R., et al., & Dickerson, R.E. (1980). Crystal structure analysis of a complete turn of DNA. Nature 287, 755-758.
    • (1980) Nature , vol.287 , pp. 755-758
    • Wing, R.1    Dickerson, R.E.2
  • 14
    • 0000127073 scopus 로고
    • Sequence-specific recognition of double helical nucleic acids by proteins
    • Seeman, N.C., Rosenberg, J.M. & Rich, A. (1976). Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl Acad. Sci. USA 73, 804-808.
    • (1976) Proc. Natl Acad. Sci. USA , vol.73 , pp. 804-808
    • Seeman, N.C.1    Rosenberg, J.M.2    Rich, A.3
  • 15
    • 0025280401 scopus 로고
    • Structural studies of protein nucleic-acid interaction-the sources of sequence-specific binding
    • Steitz, T.A. (1990). Structural studies of protein nucleic-acid interaction-the sources of sequence-specific binding. Quart. Rev. Biophys. 23, 205-280.
    • (1990) Quart. Rev. Biophys. , vol.23 , pp. 205-280
    • Steitz, T.A.1
  • 16
    • 0026700019 scopus 로고
    • Design and binding of a Distamycin A analog to d(CGCAAGTTGGC) - Synthesis, NMR-studies, and implications for the design of sequence-specific minor groove binding oligopeptides
    • Dwyer, T.J., Geierstanger, B.H., Bathini, Y., Lown, J.W. & Wemmer, D.E. (1992). Design and binding of a Distamycin A analog to d(CGCAAGTTGGC) - synthesis, NMR-studies, and implications for the design of sequence-specific minor groove binding oligopeptides. J. Am. Chem. Soc. 114, 5911-5919.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 5911-5919
    • Dwyer, T.J.1    Geierstanger, B.H.2    Bathini, Y.3    Lown, J.W.4    Wemmer, D.E.5
  • 17
    • 0027970146 scopus 로고
    • Hairpin peptide motif a new class of oligopeptides for sequence-specific recognition in the minor-groove of double-helical DNA
    • Mrksich, M., Parks, M.E. & Dervan, P.B. (1994) Hairpin peptide motif a new class of oligopeptides for sequence-specific recognition in the minor-groove of double-helical DNA. J. Am. Chem. Soc. 116, 7983-7988.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 7983-7988
    • Mrksich, M.1    Parks, M.E.2    Dervan, P.B.3
  • 18
    • 0030133318 scopus 로고    scopus 로고
    • Extended hairpin polyamide motif for sequence-specific recognition in the minor groove of DNA
    • Trauger, J.W., Baird, E.E. & Dervan, P.B. (1996). Extended hairpin polyamide motif for sequence-specific recognition in the minor groove of DNA. Chem. Biol. 3, 369-377.
    • (1996) Chem. Biol. , vol.3 , pp. 369-377
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 19
    • 0030567754 scopus 로고    scopus 로고
    • Optimization of the hairpin polyamide design for recognition of the minor groove of DNA. J
    • Parks, M.E., Baird, E.E. & Dervan, P.B. (1996). Optimization of the hairpin polyamide design for recognition of the minor groove of DNA. J. Am. Chem. Soc. 118, 6147-6152.
    • (1996) Am. Chem. Soc. , vol.118 , pp. 6147-6152
    • Parks, M.E.1    Baird, E.E.2    Dervan, P.B.3
  • 21
    • 0030059085 scopus 로고    scopus 로고
    • Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids
    • Baird, E.E. & Dervan, P.B. (1996). Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids. J. Am. Chem. Soc. 118, 6141-6146.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6141-6146
    • Baird, E.E.1    Dervan, P.B.2
  • 22
    • 0000483886 scopus 로고
    • DNA affinity cleavage. Sequence specific cleavage of DNA by distamycin-EDTA·Fe(II) and EDTA-distamycin-Fe(ll)
    • Tàylor, J.S., Schultz, P.G. & Dervan, P.B. (1984). DNA affinity cleavage. Sequence specific cleavage of DNA by distamycin-EDTA·Fe(II) and EDTA-distamycin-Fe(ll). Tetrahedron 40, 457.
    • (1984) Tetrahedron , vol.40 , pp. 457
    • Tàylor, J.S.1    Schultz, P.G.2    Dervan, P.B.3
  • 23
    • 0022693818 scopus 로고
    • Design of sequence-specific DNA-binding molecules
    • Dervan, P.B. (1986) Design of sequence-specific DNA-binding molecules. Science 232, 464-471.
    • (1986) Science , vol.232 , pp. 464-471
    • Dervan, P.B.1
  • 24
    • 0000524403 scopus 로고
    • Map of distamycin, netropsin, and actinomycin binding sites on heterogeneous DNA. DNA cleavage inhibition patterns with methidiumpropyl-EDTA-Fe(ll)
    • Van Dyke, M.W., Hertzberg, R.P. & Dervan, P.B. (1982). Map of distamycin, netropsin, and actinomycin binding sites on heterogeneous DNA. DNA cleavage inhibition patterns with methidiumpropyl-EDTA-Fe(ll). Proc. Nat/Acad. Sci. USA, 79, 5470-5474.
    • (1982) Proc. Nat/Acad. Sci. USA , vol.79 , pp. 5470-5474
    • Van Dyke, M.W.1    Hertzberg, R.P.2    Dervan, P.B.3
  • 25
    • 0021192920 scopus 로고
    • Echinomycin binding sites on DNA
    • Van Dyke, M.W. & Dervan, P.B. (1984). Echinomycin binding sites on DNA. Science 225, 1122-1127.
    • (1984) Science , vol.225 , pp. 1122-1127
    • Van Dyke, M.W.1    Dervan, P.B.2
  • 26
    • 0021768545 scopus 로고
    • DNA structural variations produced by actinomycin and distamycin as revealed by DNase-l footprinting
    • Fox, K.R. & Waring, M.J. (1984). DNA structural variations produced by actinomycin and distamycin as revealed by DNase-l footprinting. Nucleic Acids Res. 12, 9271-9285.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 9271-9285
    • Fox, K.R.1    Waring, M.J.2
  • 27
    • 0022437260 scopus 로고
    • Quantitative DNase footprint titration - A method for studying protein-DNA interactions
    • Brenowitz, M., Senear, D.F., Shea, M.A. & Ackers, G.K. (1986). Quantitative DNase footprint titration - a method for studying protein-DNA interactions. Methods Enzymol. 130, 132-181.
    • (1986) Methods Enzymol. , vol.130 , pp. 132-181
    • Brenowitz, M.1    Senear, D.F.2    Shea, M.A.3    Ackers, G.K.4
  • 29
    • 0030567759 scopus 로고    scopus 로고
    • Extension of sequence-specific recognition in the minor groove of DNA to 9-13 base-pairs
    • Trauger, J.W., Baird, E.E., Mrksich, M. & Dervan, P.B. (1996). Extension of sequence-specific recognition in the minor groove of DNA to 9-13 base-pairs. J. Am. Chem. Soc. 118, 6160-6166.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6160-6166
    • Trauger, J.W.1    Baird, E.E.2    Mrksich, M.3    Dervan, P.B.4
  • 31
    • 0030745572 scopus 로고    scopus 로고
    • Discrimination of 5′-GGGG-3′, 5′-GCGC-3′, and 5′-GGCC-3′ sequences in the minor groove of DNA by eight-ring hairpin polyamides
    • Swalley, S.E., Baird, E.E. & Dervan, P.B. (1997). Discrimination of 5′-GGGG-3′, 5′-GCGC-3′, and 5′-GGCC-3′ sequences in the minor groove of DNA by eight-ring hairpin polyamides. J. Am. Chem. Soc. 119, 6953-6961.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 6953-6961
    • Swalley, S.E.1    Baird, E.E.2    Dervan, P.B.3
  • 32
    • 0027941139 scopus 로고
    • Relative binding affinities of distamycin and its analog to d(CGCAAGTTGGC)·d(GCCAACTTGCG) comparison of simulation results with experiment
    • Singh, S.B., Wemmer, D.E. & Kollman, P.A. (1994). Relative binding affinities of distamycin and its analog to d(CGCAAGTTGGC)·d(GCCAACTTGCG) comparison of simulation results with experiment. Proc. Natl Acad. Sci. USA 91, 7673-7677.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 7673-7677
    • Singh, S.B.1    Wemmer, D.E.2    Kollman, P.A.3
  • 33
    • 0022587259 scopus 로고
    • Nonintercalating DNA binding ligands: Specificity of the interaction and their use as tools in biophysical, biochemical, and biological investigations of the genetic material
    • Zimmer, C. & Wahnert, U. (1986). Nonintercalating DNA binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical, and biological investigations of the genetic material. Prog. Biophys. Mol. Biol. 47, 31-112.
    • (1986) Prog. Biophys. Mol. Biol. , vol.47 , pp. 31-112
    • Zimmer, C.1    Wahnert, U.2
  • 34
    • 0024798612 scopus 로고
    • Molecular mechanisms of specificity in DNA-antitumour drug interactions
    • Pullman, B. (1990). Molecular mechanisms of specificity in DNA-antitumour drug interactions. Adv. Drug Res. 18, 1-113.
    • (1990) Adv. Drug Res. , vol.18 , pp. 1-113
    • Pullman, B.1
  • 35
    • 0018846636 scopus 로고
    • Sequencing end-labeled DNA with base-specific chemical cleavages
    • Maxam, A.M. & Gilbert, W.S. (1980). Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65, 499-560.
    • (1980) Methods Enzymol. , vol.65 , pp. 499-560
    • Maxam, A.M.1    Gilbert, W.S.2
  • 36
    • 0023652067 scopus 로고
    • Adenine-specific DNA chemical sequencing reaction
    • Iverson, B.L. & Dervan, P.B. (1987). Adenine-specific DNA chemical sequencing reaction. Methods Enzymol. 15, 7823-7830.
    • (1987) Methods Enzymol. , vol.15 , pp. 7823-7830
    • Iverson, B.L.1    Dervan, P.B.2
  • 38
    • 0025336478 scopus 로고
    • Autoradiography using storage phosphor technology
    • Johnston, R.F., Picket, S.C. & Barker, D.L. (1990). Autoradiography using storage phosphor technology. Electrophoresis 11, 355-360.
    • (1990) Electrophoresis , vol.11 , pp. 355-360
    • Johnston, R.F.1    Picket, S.C.2    Barker, D.L.3
  • 39
    • 0029745052 scopus 로고    scopus 로고
    • Cation-pi interactions in aromatics of biological and medicinal interestelectrostatic potential surfaces as a useful qualitative guide
    • Mecozzi, S., West, A.P. & Dougherty, D.A. (1996). Cation-pi interactions in aromatics of biological and medicinal interestelectrostatic potential surfaces as a useful qualitative guide. Proc. Natl Acad. Sci. USA 93, 10566-10571.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 10566-10571
    • Mecozzi, S.1    West, A.P.2    Dougherty, D.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.