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Volumn 13, Issue 4, 2003, Pages 191-198

Combining nested PCR and restriction digest of the internal transcribed spacer region to characterize arbuscular mycorrhizal fungi on roots from the field

Author keywords

AluI restriction; Arbuscular mycorrhizal fungi; Internal transcribed spacer; Monitoring of arbuscular mycorrhiza; Nested PCR

Indexed keywords

ARBUSCULAR MYCORRHIZA; COMMUNITY COMPOSITION; FUNGUS; IDENTIFICATION METHOD; POLYMERASE CHAIN REACTION;

EID: 0042239296     PISSN: 09406360     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00572-002-0214-5     Document Type: Article
Times cited : (85)

References (34)
  • 1
    • 0033921620 scopus 로고    scopus 로고
    • Variation in rDNA ITS sequences in Glomus mosseae and Gigaspora margarita spores from a permanent pasture
    • Antoniolli ZI, Schachtman DP, Ophel-Keller K, Smith SE (2000) Variation in rDNA ITS sequences in Glomus mosseae and Gigaspora margarita spores from a permanent pasture. Mycol Res 104:708-715
    • (2000) Mycol Res , vol.104 , pp. 708-715
    • Antoniolli, Z.I.1    Schachtman, D.P.2    Ophel-Keller, K.3    Smith, S.E.4
  • 2
    • 0033763580 scopus 로고    scopus 로고
    • Recent advances in exploring physiology and biodiversity of ectomycorrhizas highlight the functioning of these symbioses in ecosystems
    • Buscot F, Munch JC, Charcosset JY, Gardes M, Nehls U, Hampp R (2000) Recent advances in exploring physiology and biodiversity of ectomycorrhizas highlight the functioning of these symbioses in ecosystems. FEMS Microbiol Rev 24:601-614
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 601-614
    • Buscot, F.1    Munch, J.C.2    Charcosset, J.Y.3    Gardes, M.4    Nehls, U.5    Hampp, R.6
  • 3
    • 0028978636 scopus 로고
    • Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community
    • Clapp JP, Young JPW, Merryweather JW, Fitter AH (1995) Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community. New Phytol 130:259-265
    • (1995) New Phytol , vol.130 , pp. 259-265
    • Clapp, J.P.1    Young, J.P.W.2    Merryweather, J.W.3    Fitter, A.H.4
  • 4
    • 0034942590 scopus 로고    scopus 로고
    • Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops
    • Daniell TJ, Husband R, Fitter AH, Young JPW (2001) Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops. FEMS Microbiol Ecol 36:203-209
    • (2001) FEMS Microbiol Ecol , vol.36 , pp. 203-209
    • Daniell, T.J.1    Husband, R.2    Fitter, A.H.3    Young, J.P.W.4
  • 5
    • 84982643778 scopus 로고
    • A check-list of mycorrhiza in the British flora
    • Harley JL, Harley EL (1987) A check-list of mycorrhiza in the British flora. New Phytol 105 [Suppl]:1-102
    • (1987) New Phytol , vol.105 , Issue.SUPPL. , pp. 1-102
    • Harley, J.L.1    Harley, E.L.2
  • 7
    • 0032892803 scopus 로고    scopus 로고
    • Molecular diversity of arbuscular mycorrhizal fungi colonising Hyacinthoides non-scripta (bluebell) in a seminatural woodland
    • Helgason T, Fitter AH, Young JPW (1999) Molecular diversity of arbuscular mycorrhizal fungi colonising Hyacinthoides non-scripta (bluebell) in a seminatural woodland. Mol Ecol 8:659-666
    • (1999) Mol Ecol , vol.8 , pp. 659-666
    • Helgason, T.1    Fitter, A.H.2    Young, J.P.W.3
  • 8
    • 0032831261 scopus 로고    scopus 로고
    • Intraspecific ITS polymorphism in Scutellospora castanea (Glomales, Zygomycota) is structured within multinucleate spores
    • Hijri M, Hosny M, van Tuinen D, Dulieu H (1999) Intraspecific ITS polymorphism in Scutellospora castanea (Glomales, Zygomycota) is structured within multinucleate spores. Fun Genet Biol 26:141-151
    • (1999) Fun Genet Biol , vol.26 , pp. 141-151
    • Hijri, M.1    Hosny, M.2    Van Tuinen, D.3    Dulieu, H.4
  • 9
    • 0032868013 scopus 로고    scopus 로고
    • The zinc violet and its colonization by arbuscular mycorrhizal fungi
    • Hildebrandt U, Kaldorf M, Bothe H (1999) The zinc violet and its colonization by arbuscular mycorrhizal fungi. J Plant Physiol 154:709-717
    • (1999) J Plant Physiol , vol.154 , pp. 709-717
    • Hildebrandt, U.1    Kaldorf, M.2    Bothe, H.3
  • 10
    • 0035133503 scopus 로고    scopus 로고
    • Arbuscular mycorrhizal colonization of halophytes in Central European salt marshes
    • Hildebrandt U, Janetta K, Ouziad F, Renne B, Nawrath K, Bothe H (2001) Arbuscular mycorrhizal colonization of halophytes in Central European salt marshes. Mycorrhiza 10:175-183
    • (2001) Mycorrhiza , vol.10 , pp. 175-183
    • Hildebrandt, U.1    Janetta, K.2    Ouziad, F.3    Renne, B.4    Nawrath, K.5    Bothe, H.6
  • 11
    • 0033534774 scopus 로고    scopus 로고
    • rDNA units are highly polymorphic in Scutellospora castanea (Glomales, Zygomycetes)
    • Hosny M, Hijri M, Passerieux E, Dulieu H (1999) rDNA units are highly polymorphic in Scutellospora castanea (Glomales, Zygomycetes). Gene 226:61-71
    • (1999) Gene , vol.226 , pp. 61-71
    • Hosny, M.1    Hijri, M.2    Passerieux, E.3    Dulieu, H.4
  • 12
    • 0034492267 scopus 로고    scopus 로고
    • Monitoring species of arbuscular mycorrhizal fungi in planta and in soil by nested PCR: Application to the study of the impact of sewage sludge
    • Jacquot E, van Tuinen D, Gianinazzi S, Gianinazzi-Pearson V (2000) Monitoring species of arbuscular mycorrhizal fungi in planta and in soil by nested PCR: application to the study of the impact of sewage sludge. Plant Soil 226:179-188
    • (2000) Plant Soil , vol.226 , pp. 179-188
    • Jacquot, E.1    Van Tuinen, D.2    Gianinazzi, S.3    Gianinazzi-Pearson, V.4
  • 13
    • 0003355497 scopus 로고    scopus 로고
    • Detection of arbuscular mycorrhizal fungi (Glomales) in roots by nested PCR and SSCP (Single stranded conformation polymorphism)
    • Kjøller R, Rosendahl S (2000) Detection of arbuscular mycorrhizal fungi (Glomales) in roots by nested PCR and SSCP (Single stranded conformation polymorphism). Plant Soil 226:189-196
    • (2000) Plant Soil , vol.226 , pp. 189-196
    • Kjøller, R.1    Rosendahl, S.2
  • 14
    • 0035137612 scopus 로고    scopus 로고
    • Effects of alkaline dust deposits from phosphate fertilizer production on microbial biomass and enzyme activities in grassland soils
    • Langer U, Günther T (2001) Effects of alkaline dust deposits from phosphate fertilizer production on microbial biomass and enzyme activities in grassland soils. Environ Pollut 112:321-327
    • (2001) Environ Pollut , vol.112 , pp. 321-327
    • Langer, U.1    Günther, T.2
  • 15
    • 0002001757 scopus 로고    scopus 로고
    • Diversity of the ribosomal internal transcribed spacers within and among isolates of Glomus mosseae and related mycorrhizal fungi
    • Lloyd-MacGilp SA, Chambers SM, Dodd JC, Fitter AH, Walker C, Young JPW (1996) Diversity of the ribosomal internal transcribed spacers within and among isolates of Glomus mosseae and related mycorrhizal fungi. New Phytol 133:103-111
    • (1996) New Phytol , vol.133 , pp. 103-111
    • Lloyd-MacGilp, S.A.1    Chambers, S.M.2    Dodd, J.C.3    Fitter, A.H.4    Walker, C.5    Young, J.P.W.6
  • 16
    • 0031862848 scopus 로고    scopus 로고
    • The arbuscular mycorrhizal fungi of Hyacinthoides non-scripta. I. Diversity of fungal taxa
    • Merryweather J, Fitter A (1998) The arbuscular mycorrhizal fungi of Hyacinthoides non-scripta. I. Diversity of fungal taxa. New Phytol 138:117-129
    • (1998) New Phytol , vol.138 , pp. 117-129
    • Merryweather, J.1    Fitter, A.2
  • 17
    • 0035868454 scopus 로고    scopus 로고
    • Taxon-specific oligonucleotide primers for detection of two ancient endomycorrhizal fungim, Glomus occultum and Glomus brasilianum
    • Millner PD, Mulbry WW, Reynolds SL (2001) Taxon-specific oligonucleotide primers for detection of two ancient endomycorrhizal fungi, Glomus occultum and Glomus brasilianum. FEMS Microbiol Lett 196:165-170
    • (2001) FEMS Microbiol Lett , vol.196 , pp. 165-170
    • Millner, P.D.1    Mulbry, W.W.2    Reynolds, S.L.3
  • 18
    • 0001110812 scopus 로고
    • Revised classification of arbuscular mycorrhizal fungi (Zygomycetes): A new order, Glomales, two new suborders, Glomineae and Gigasporineae, and two new families, Acaulosporaceae and Gigasporaceae, with an emendation of Glomaceae
    • Morton JB, Benny GL (1990) Revised classification of arbuscular mycorrhizal fungi (Zygomycetes): a new order, Glomales, two new suborders, Glomineae and Gigasporineae, and two new families, Acaulosporaceae and Gigasporaceae, with an emendation of Glomaceae. Mycotaxon 37:471-491
    • (1990) Mycotaxon , vol.37 , pp. 471-491
    • Morton, J.B.1    Benny, G.L.2
  • 19
    • 0033812194 scopus 로고    scopus 로고
    • Specific PCR primers to identify arbuscular mycorrhizal fungi within colonized roots
    • Redecker D (2000) Specific PCR primers to identify arbuscular mycorrhizal fungi within colonized roots. Mycorrhiza 10:73-80
    • (2000) Mycorrhiza , vol.10 , pp. 73-80
    • Redecker, D.1
  • 20
    • 0030902702 scopus 로고    scopus 로고
    • Restriction analysis of PCR-amplified internal transcribed spacers of ribosomal DNA as a tool for species identification in different genera of the order Glomales
    • Redecker D, Thierfelder H, Walker C, Werner D (1997) Restriction analysis of PCR-amplified internal transcribed spacers of ribosomal DNA as a tool for species identification in different genera of the order Glomales. Appl Environ Microbiol 63:1756-1761
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1756-1761
    • Redecker, D.1    Thierfelder, H.2    Walker, C.3    Werner, D.4
  • 21
    • 0033493591 scopus 로고    scopus 로고
    • Phylogenetic analysis of a dataset of fungal 5.8S rDNA sequences shows that highly divergent copies of internal transcribed spacers reported from Scutellospora castanea are of ascomycete origin
    • Redecker D, Hijri M, Dulieu H, Sanders IR (1999) Phylogenetic analysis of a dataset of fungal 5.8S rDNA sequences shows that highly divergent copies of internal transcribed spacers reported from Scutellospora castanea are of ascomycete origin. Fungal Genet Biol 28:238-244
    • (1999) Fungal Genet Biol , vol.28 , pp. 238-244
    • Redecker, D.1    Hijri, M.2    Dulieu, H.3    Sanders, I.R.4
  • 22
    • 0034072204 scopus 로고    scopus 로고
    • Ancestral lineages of arbuscular mycorrhizal fungi (Glomales)
    • Redecker D, Morton JB, Bruns TD (2000) Ancestral lineages of arbuscular mycorrhizal fungi (Glomales). Mol Phylogenet Evol 14:276-284
    • (2000) Mol Phylogenet Evol , vol.14 , pp. 276-284
    • Redecker, D.1    Morton, J.B.2    Bruns, T.D.3
  • 23
    • 0029751313 scopus 로고    scopus 로고
    • The genetic diversity of arbuscular mycorrhizal fungi in natural ecosystems - A key to understanding the ecology and functioning of the mycorrhizal symbiosis
    • Sanders IR, Clapp JP, Wiemken A (1996) The genetic diversity of arbuscular mycorrhizal fungi in natural ecosystems - a key to understanding the ecology and functioning of the mycorrhizal symbiosis. New Phytol 133:123-134
    • (1996) New Phytol , vol.133 , pp. 123-134
    • Sanders, I.R.1    Clapp, J.P.2    Wiemken, A.3
  • 24
    • 0032762880 scopus 로고    scopus 로고
    • Glomales SSU rRNA gene diversity
    • Schüßler A (1999) Glomales SSU rRNA gene diversity. New Phytol 144:205-207
    • (1999) New Phytol , vol.144 , pp. 205-207
    • Schüßler, A.1
  • 25
    • 0035711692 scopus 로고    scopus 로고
    • A new fungal phylum, the Glomeromycota: Phylogeny and evolution
    • Schüßler A, Schwarzott D, Walker C (2001) A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycol Res 105:1413-1421
    • (2001) Mycol Res , vol.105 , pp. 1413-1421
    • Schüßler, A.1    Schwarzott, D.2    Walker, C.3
  • 26
    • 0035197055 scopus 로고    scopus 로고
    • Glomus, the largest genus of the arbuscular mycorrhizal fungi (Glomales), is nonmonophyletic
    • Schwarzott D, Walker C, Schüßler A (2001) Glomus, the largest genus of the arbuscular mycorrhizal fungi (Glomales), is nonmonophyletic. Mol Phylogenet Evol 21:190-197
    • (2001) Mol Phylogenet Evol , vol.21 , pp. 190-197
    • Schwarzott, D.1    Walker, C.2    Schüßler, A.3
  • 29
    • 0035132612 scopus 로고    scopus 로고
    • Assessment of arbuscular mycorrhizal fungi diversity in the rhizosphere of Viola calaminaria and effect of these fungi on heavy metal uptake by clover
    • Tonin C, Vandenkoornhuyse P, Joner EJ, Straczek J, Leyval C (2001) Assessment of arbuscular mycorrhizal fungi diversity in the rhizosphere of Viola calaminaria and effect of these fungi on heavy metal uptake by clover. Mycorrhiza 10:161-168
    • (2001) Mycorrhiza , vol.10 , pp. 161-168
    • Tonin, C.1    Vandenkoornhuyse, P.2    Joner, E.J.3    Straczek, J.4    Leyval, C.5
  • 30
    • 0035136673 scopus 로고    scopus 로고
    • Identification of arbuscular mycorrhizal fungi in soils and roots of plants colonizing zinc wastes in southern Poland
    • Turnau K, Ryszka P, Gianinazzi-Pearson V, van Tuinen D (2001) Identification of arbuscular mycorrhizal fungi in soils and roots of plants colonizing zinc wastes in southern Poland. Mycorrhiza 10:169-174
    • (2001) Mycorrhiza , vol.10 , pp. 169-174
    • Turnau, K.1    Ryszka, P.2    Gianinazzi-Pearson, V.3    Van Tuinen, D.4
  • 31
    • 0031671176 scopus 로고    scopus 로고
    • Different arbuscular mycorrhizal fungal species are potential determinants of plant community structure
    • Van der Heijden MGA, Boller T, Wiemken A, Sanders IR (1998) Different arbuscular mycorrhizal fungal species are potential determinants of plant community structure. Ecology 79:2082-2091
    • (1998) Ecology , vol.79 , pp. 2082-2091
    • Van Der Heijden, M.G.A.1    Boller, T.2    Wiemken, A.3    Sanders, I.R.4
  • 32
    • 0032128137 scopus 로고    scopus 로고
    • Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA-targeted nested PCR
    • Van Tuinen D, Jacquot E, Zhao B, Gollotte A, Gianinazzi-Pearson V. (1998a) Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA-targeted nested PCR. Mol Ecol 7:879-887
    • (1998) Mol Ecol , vol.7 , pp. 879-887
    • Van Tuinen, D.1    Jacquot, E.2    Zhao, B.3    Gollotte, A.4    Gianinazzi-Pearson, V.5
  • 33
    • 0002233804 scopus 로고    scopus 로고
    • PCR in studies of AM fungi: From primer to application
    • Varma A (ed). Springer, Berlin Heidelberg New York
    • Van Tuinen D, Zhao B, Gianinazzi-Pearson V (1998b) PCR in studies of AM fungi: from primer to application. In: Varma A (ed) Mycorrhiza manual. Springer, Berlin Heidelberg New York, pp 387-399
    • (1998) Mycorrhiza Manual , pp. 387-399
    • Van Tuinen, D.1    Zhao, B.2    Gianinazzi-Pearson, V.3
  • 34
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds). Academic, San Diego
    • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315-322
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4


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