-
1
-
-
0013936167
-
Codon-anticodon pairing: The wobble hypothesis
-
Crick F.H. Codon-anticodon pairing: the wobble hypothesis. J. Mol. Biol. 19:1966;548-555.
-
(1966)
J. Mol. Biol.
, vol.19
, pp. 548-555
-
-
Crick, F.H.1
-
2
-
-
0033485558
-
Non-Watson-Crick base pairs in RNA-protein recognition
-
Hermann T., Westhof E. Non-Watson-Crick base pairs in RNA-protein recognition. Chem. Biol. 12:1999;R335-R343.
-
(1999)
Chem. Biol.
, vol.12
-
-
Hermann, T.1
Westhof, E.2
-
3
-
-
0029949701
-
Structure and function of the hammerhead ribozyme: An unfinished story
-
Mckay D.B. Structure and function of the hammerhead ribozyme: an unfinished story. RNA. 2:1996;395-403.
-
(1996)
RNA
, vol.2
, pp. 395-403
-
-
Mckay, D.B.1
-
4
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate J.H., Gooding A.R., Podell E., Zhou K., Golden B.L., Kundrot C.E., et al. Crystal structure of a group I ribozyme domain: principles of RNA packing. Science. 273:1996;1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
-
5
-
-
0033680079
-
Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis
-
Andersen A.A., Collins R.A. Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis. Mol. Cell. 5:2000;469-478.
-
(2000)
Mol. Cell
, vol.5
, pp. 469-478
-
-
Andersen, A.A.1
Collins, R.A.2
-
6
-
-
0034538971
-
Structure of the ribozyme substrate hairpin of Neurospora VS RNA: A close look at the cleavage site
-
Michiels P.J., Schouten C.H., Hilbers C.W., Heus H.A. Structure of the ribozyme substrate hairpin of Neurospora VS RNA: a close look at the cleavage site. RNA. 6:2000;1821-1832.
-
(2000)
RNA
, vol.6
, pp. 1821-1832
-
-
Michiels, P.J.1
Schouten, C.H.2
Hilbers, C.W.3
Heus, H.A.4
-
7
-
-
0029744135
-
Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach
-
Wu M., Turner D.H. Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach. Biochemistry. 35:1996;9677-9689.
-
(1996)
Biochemistry
, vol.35
, pp. 9677-9689
-
-
Wu, M.1
Turner, D.H.2
-
8
-
-
0027146665
-
Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics
-
SantaLucia J., Turner D.H. Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics. Biochemistry. 32:1993;12612-12623.
-
(1993)
Biochemistry
, vol.32
, pp. 12612-12623
-
-
SantaLucia, J.1
Turner, D.H.2
-
9
-
-
0031559569
-
The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent
-
Heus H.A., Wijmenga S.S., Hoppe H., Hilbers C.W. The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent. J. Mol. Biol. 271:1997;147-158.
-
(1997)
J. Mol. Biol.
, vol.271
, pp. 147-158
-
-
Heus, H.A.1
Wijmenga, S.S.2
Hoppe, H.3
Hilbers, C.W.4
-
10
-
-
0019521358
-
Primary structure, gene organisation and polypeptide expression of poliovirus RNA
-
Kitamura N., Semler B.L., Rothberg P.G., Larsen G.R., Adler C.J., Dorner A.J., et al. Primary structure, gene organisation and polypeptide expression of poliovirus RNA. Nature. 291:1981;547-553.
-
(1981)
Nature
, vol.291
, pp. 547-553
-
-
Kitamura, N.1
Semler, B.L.2
Rothberg, P.G.3
Larsen, G.R.4
Adler, C.J.5
Dorner, A.J.6
-
11
-
-
0029838843
-
Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: A quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions
-
Pilipenko E.V., Poperechny K.V., Maslova S.V., Melchers W.J., Bruins Slot H.J., Agol V.I. Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: a quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions. EMBO J. 15:1996;5428-5436.
-
(1996)
EMBO J.
, vol.15
, pp. 5428-5436
-
-
Pilipenko, E.V.1
Poperechny, K.V.2
Maslova, S.V.3
Melchers, W.J.4
Bruins Slot, H.J.5
Agol, V.I.6
-
12
-
-
0031060472
-
Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis
-
Melchers W.J., Hoenderop J.G., Bruins Slot H.J., Pleij C.W., Pilipenko E.V., Agol V.I., Galama J.M. Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis. J. Virol. 71:1997;686-696.
-
(1997)
J. Virol.
, vol.71
, pp. 686-696
-
-
Melchers, W.J.1
Hoenderop, J.G.2
Bruins Slot, H.J.3
Pleij, C.W.4
Pilipenko, E.V.5
Agol, V.I.6
Galama, J.M.7
-
13
-
-
0033555905
-
Structural requirements of the higher order RNA kissing element in the enteroviral 3′UTR
-
Wang J., Bakkers J.M., Galama J.M., Bruins Slot H.J., Pilipenko E.V., Agol V.I., Melchers W.J. Structural requirements of the higher order RNA kissing element in the enteroviral 3′UTR. Nucl. Acids Res. 27:1999;485-490.
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 485-490
-
-
Wang, J.1
Bakkers, J.M.2
Galama, J.M.3
Bruins Slot, H.J.4
Pilipenko, E.V.5
Agol, V.I.6
Melchers, W.J.7
-
14
-
-
0033942925
-
Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR
-
Melchers W.J., Bakkers J.M., Bruins Slot H.J., Galama J.M., Agol V.I., Pilipenko E.V. Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR. RNA. 6:2000;976-987.
-
(2000)
RNA
, vol.6
, pp. 976-987
-
-
Melchers, W.J.1
Bakkers, J.M.2
Bruins Slot, H.J.3
Galama, J.M.4
Agol, V.I.5
Pilipenko, E.V.6
-
15
-
-
0027959741
-
Interaction of poliovirus polypeptide 3CDpro with the 5′ and 3′ termini of the poliovirus genome
-
Harris K.S., Xiang W., Alexander L., Lane W.S., Paul A.V., Wimmer E. Interaction of poliovirus polypeptide 3CDpro with the 5′ and 3′ termini of the poliovirus genome. J. Biol. Chem. 269:1994;27004-27014.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 27004-27014
-
-
Harris, K.S.1
Xiang, W.2
Alexander, L.3
Lane, W.S.4
Paul, A.V.5
Wimmer, E.6
-
16
-
-
0031927035
-
Viral ribonucleoprotein complex formation and nucleolar-cytoplasmic relocalization of nucleolin in poliovirus-infected cells
-
Waggoner S., Sarnow P. Viral ribonucleoprotein complex formation and nucleolar-cytoplasmic relocalization of nucleolin in poliovirus-infected cells. J. Virol. 72:1998;6699-6709.
-
(1998)
J. Virol.
, vol.72
, pp. 6699-6709
-
-
Waggoner, S.1
Sarnow, P.2
-
17
-
-
0032708706
-
Similar interactions of the poliovirus and rhinovirus 3D polymerases with the 3′ untranslated region of rhinovirus 14
-
Meredith J.M., Rohll J.B., Almond J.W., Evans D.J. Similar interactions of the poliovirus and rhinovirus 3D polymerases with the 3′ untranslated region of rhinovirus 14. J. Virol. 73:1999;9952-9958.
-
(1999)
J. Virol.
, vol.73
, pp. 9952-9958
-
-
Meredith, J.M.1
Rohll, J.B.2
Almond, J.W.3
Evans, D.J.4
-
18
-
-
0035265836
-
Poliovirus RNA replication requres genome circularization through a protein-ptotein bridge
-
Herold J., Andino R. Poliovirus RNA replication requres genome circularization through a protein-ptotein bridge. Mol. Cell. 7:2001;581-591.
-
(2001)
Mol. Cell
, vol.7
, pp. 581-591
-
-
Herold, J.1
Andino, R.2
-
19
-
-
0035868852
-
5′ Cloverleaf in poliovirus RNA is a cis-acting replication element required for negative strand synthesis
-
Barton D.J., O'Donnell B.J., Flanegan J.B. 5′ Cloverleaf in poliovirus RNA is a cis-acting replication element required for negative strand synthesis. EMBO J. 20:2001;1439-1448.
-
(2001)
EMBO J.
, vol.20
, pp. 1439-1448
-
-
Barton, D.J.1
O'Donnell, B.J.2
Flanegan, J.B.3
-
20
-
-
0031463994
-
Solution structure of a GAAA tetraloop receptor RNA
-
Butcher S.E., Dieckmann T., Feigon J. Solution structure of a GAAA tetraloop receptor RNA. EMBO J. 16:1997;7490-7499.
-
(1997)
EMBO J.
, vol.16
, pp. 7490-7499
-
-
Butcher, S.E.1
Dieckmann, T.2
Feigon, J.3
-
21
-
-
0032578472
-
RNA folding causes secondary structure rearrangement
-
Wu M., Tinoco I. Jr. RNA folding causes secondary structure rearrangement. PNAS. 96:1998;11555-11560.
-
(1998)
PNAS
, vol.96
, pp. 11555-11560
-
-
Wu, M.1
Tinoco I., Jr.2
-
22
-
-
0033784534
-
Induced fit in RNA-protein recognition
-
Williamson J.R. Induced fit in RNA-protein recognition. Nature Struct. Biol. 7:2000;834-837.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
23
-
-
0035957430
-
Solution structure of the A loop of 23 S ribosomal RNA
-
Blanchard S.C., Puglisi J.D. Solution structure of the A loop of 23 S ribosomal RNA. Proc. Natl Acad. Sci. USA. 98:2001;3720-3725.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 3720-3725
-
-
Blanchard, S.C.1
Puglisi, J.D.2
-
25
-
-
0030596092
-
A network of heterogeneous hydrogen bonds in GNRA tetraloops
-
Jucker F.M., Heus H.A., Yip P.F., Moors E.H., Pardi A. A network of heterogeneous hydrogen bonds in GNRA tetraloops. J. Mol. Biol. 164:1996;968-980.
-
(1996)
J. Mol. Biol.
, vol.164
, pp. 968-980
-
-
Jucker, F.M.1
Heus, H.A.2
Yip, P.F.3
Moors, E.H.4
Pardi, A.5
-
26
-
-
0030815643
-
Thermodynamics of nonsymmetric tandem mismatches adjacent to G·C base pairs in RNA
-
Xia T., McDowell J.A., Turner D.H. Thermodynamics of nonsymmetric tandem mismatches adjacent to G·C base pairs in RNA. Biochemistry. 36:1997;12486-12497.
-
(1997)
Biochemistry
, vol.36
, pp. 12486-12497
-
-
Xia, T.1
McDowell, J.A.2
Turner, D.H.3
-
27
-
-
0030586821
-
The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites
-
Lietzke S.E., Barnes C.L., Berglund J.A., Kundrot C.E. The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites. Structure. 4:1996;917-930.
-
(1996)
Structure
, vol.4
, pp. 917-930
-
-
Lietzke, S.E.1
Barnes, C.L.2
Berglund, J.A.3
Kundrot, C.E.4
-
28
-
-
0026000848
-
Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs
-
Holbrook S.R., Cheong C., Tinoco I. Jr, Kim S.H. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature. 353:1991;579-581.
-
(1991)
Nature
, vol.353
, pp. 579-581
-
-
Holbrook, S.R.1
Cheong, C.2
Tinoco I., Jr.3
Kim, S.H.4
-
30
-
-
0033607261
-
Thermodynamics of single mismatches in RNA duplexes
-
Kierzek R., Burkard M.E., Turner D.H. Thermodynamics of single mismatches in RNA duplexes. Biochemistry. 38:1999;14214-14223.
-
(1999)
Biochemistry
, vol.38
, pp. 14214-14223
-
-
Kierzek, R.1
Burkard, M.E.2
Turner, D.H.3
-
31
-
-
0028917227
-
A periodic table of symmetric tandem mismatches in RNA
-
Wu M., McDowell J.A., Turner D.H. A periodic table of symmetric tandem mismatches in RNA. Biochemistry. 34:1995;3204-3211.
-
(1995)
Biochemistry
, vol.34
, pp. 3204-3211
-
-
Wu, M.1
McDowell, J.A.2
Turner, D.H.3
-
32
-
-
0005822936
-
Improved estimation of secondary structure in ribonucleic acids
-
Tinoco I. Jr, Borer P.N., Dengler B., Levine M.D., Uhlenbeck O.C., Crothers D.M., Gralla J. Improved estimation of secondary structure in ribonucleic acids. Nature New Biol. 246:1973;40-41.
-
(1973)
Nature New Biol.
, vol.246
, pp. 40-41
-
-
Tinoco I., Jr.1
Borer, P.N.2
Dengler, B.3
Levine, M.D.4
Uhlenbeck, O.C.5
Crothers, D.M.6
Gralla, J.7
-
33
-
-
0029100233
-
Predicting thermodynamic properties of RNA
-
Serra M.J., Turner D.H. Predicting thermodynamic properties of RNA. Methods Enzymol. 259:1995;243-261.
-
(1995)
Methods Enzymol.
, vol.259
, pp. 243-261
-
-
Serra, M.J.1
Turner, D.H.2
-
35
-
-
0018086876
-
Stacking of Crick Wobble pair and Watson-Crick pair: Stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon Wobble interaction
-
Mizuno H., Sundaralingam M. Stacking of Crick Wobble pair and Watson-Crick pair: stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon Wobble interaction. Nucl. Acids Res. 5:1978;4451-4461.
-
(1978)
Nucl. Acids Res.
, vol.5
, pp. 4451-4461
-
-
Mizuno, H.1
Sundaralingam, M.2
-
36
-
-
0027956537
-
A major family of motifs involving G·A mismatches in ribosomal RNA
-
Gautheret D., Konings D., Gutell R.R. A major family of motifs involving G·A mismatches in ribosomal RNA. J. Mol. Biol. 242:1994;1-8.
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 1-8
-
-
Gautheret, D.1
Konings, D.2
Gutell, R.R.3
-
37
-
-
0036776338
-
Biological significance of a human enterovirus B-specific RNA element in the 3′ nontranslated region
-
Merkle I., van Ooij M.J., van Kuppeveld F.J., Glaudemans D.H., Galama J.M., Henke A., et al. Biological significance of a human enterovirus B-specific RNA element in the 3′ nontranslated region. J. Virol. 76:2002;9900-9909.
-
(2002)
J. Virol.
, vol.76
, pp. 9900-9909
-
-
Merkle, I.1
Van Ooij, M.J.2
Van Kuppeveld, F.J.3
Glaudemans, D.H.4
Galama, J.M.5
Henke, A.6
-
38
-
-
0023651444
-
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
-
Milligan J.F., Groebe D.R., Witherell G.W., Uhlenbeck O.C. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucl. Acids Res. 15:1987;8783-8798.
-
(1987)
Nucl. Acids Res.
, vol.15
, pp. 8783-8798
-
-
Milligan, J.F.1
Groebe, D.R.2
Witherell, G.W.3
Uhlenbeck, O.C.4
-
39
-
-
0343359244
-
Investigation of exchange processes by two dimensional NMR spectroscopy
-
Jeener J., Meier B.H., Bachmann P., Ernst R.R. Investigation of exchange processes by two dimensional NMR spectroscopy. J. Chem. Phys. 71:1970;4546-4553.
-
(1970)
J. Chem. Phys.
, vol.71
, pp. 4546-4553
-
-
Jeener, J.1
Meier, B.H.2
Bachmann, P.3
Ernst, R.R.4
-
40
-
-
33845555707
-
Exchangeable proton NMR without baseline distortion, using new strong-pulse sequences
-
Plateau P., Guéron M. Exchangeable proton NMR without baseline distortion, using new strong-pulse sequences. J. Am. Chem. Soc. 104:1982;7310-7311.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 7310-7311
-
-
Plateau, P.1
Guéron, M.2
-
41
-
-
0003062277
-
Simplification of NMR spectra by filtration through multiple quantum coherence
-
Shaka A.J., Freeman R. Simplification of NMR spectra by filtration through multiple quantum coherence. J. Magn. Reson. 51:1983;169-173.
-
(1983)
J. Magn. Reson.
, vol.51
, pp. 169-173
-
-
Shaka, A.J.1
Freeman, R.2
-
44
-
-
0001069349
-
On the structure determination of a 44n RNA pseudoknot: Assignment strategies and derivation of torsion angle restraints
-
Kolk M.H., Wijmenga S.S., Heus H.A., Hilbers C.W. On the structure determination of a 44n RNA pseudoknot: assignment strategies and derivation of torsion angle restraints. J. Biomol. NMR. 12:1998;423-433.
-
(1998)
J. Biomol. NMR
, vol.12
, pp. 423-433
-
-
Kolk, M.H.1
Wijmenga, S.S.2
Heus, H.A.3
Hilbers, C.W.4
-
45
-
-
0002934112
-
Structure determinations from NMR data I. Analysis of NMR data
-
G.C.P. Roberts. New York: Oxford University Press
-
Barsukov I.L., Lian L.Y. Structure determinations from NMR data I. Analysis of NMR data. Roberts G.C.P. NMR of Macromolecules. A Practical Approach. 1993;315-357 Oxford University Press, New York.
-
(1993)
NMR of Macromolecules. A Practical Approach
, pp. 315-357
-
-
Barsukov, I.L.1
Lian, L.Y.2
-
47
-
-
0030621858
-
Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation
-
Stein E.G., Rice L.M., Brünger A.T. Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation. J. Magn. Reson. 124:1997;154-164.
-
(1997)
J. Magn. Reson.
, vol.124
, pp. 154-164
-
-
Stein, E.G.1
Rice, L.M.2
Brünger, A.T.3
-
49
-
-
0034786589
-
Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation
-
Cromsigt J.A.M.T.C., Hilbers C.W., Wijmenga S.S. Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation. J. Biomol. NMR. 21:2001;11-29.
-
(2001)
J. Biomol. NMR
, vol.21
, pp. 11-29
-
-
Cromsigt, J.A.M.T.C.1
Hilbers, C.W.2
Wijmenga, S.S.3
-
50
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R., Billeter M., Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14:1996;51-55.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
51
-
-
0028871749
-
Genetic analysis of a hydrophobic domain of coxsackie B3 virus protein 2B: A moderate degree of hydrophobicity is required for a cis-acting function in viral RNA synthesis
-
van Kuppeveld F.J., Galama J.M., Zoll J., Melchers W.J. Genetic analysis of a hydrophobic domain of coxsackie B3 virus protein 2B: a moderate degree of hydrophobicity is required for a cis-acting function in viral RNA synthesis. J. Virol. 69:1995;7782-7790.
-
(1995)
J. Virol.
, vol.69
, pp. 7782-7790
-
-
Van Kuppeveld, F.J.1
Galama, J.M.2
Zoll, J.3
Melchers, W.J.4
|