In vitro protein microarrays for detecting protein-protein interactions: Application of a new method for fluorescence labeling of proteins

Proteomics

Volumn 3, Issue 7, 2003, Pages 1236-1243

  Kawahashi, Yuko ^a,b   Doi, Nobuhide ^a   Takashima, Hideaki ^a,c   Tsuda, Chizuru ^a   Oishi, Yuko ^a   Oyama, Rieko ^a   Yonezawa, Masato ^a   Miyamoto Sato, Etsuko ^a   Yanagawa, Hiroshi ^a  

^a KEIO UNIVERSITY   (Japan)

^b Tsukuba Technical University   (Japan)

^c MITSUBISHI KAGAKU INSTITUTE OF LIFE SCIENCES   (Japan)

Author keywords

Cell free protein synthesis; Fluorescence labeling; Protein microarrays; Protein protein interactions; Puromycin technology

Indexed keywords

BIOTIN; PROTEOME; PUROMYCIN; STREPTAVIDIN;

ANALYTIC METHOD; CHEMICAL LABELING; CONFERENCE PAPER; PRIORITY JOURNAL; PROTEIN ENGINEERING; PROTEIN MICROARRAY; PROTEIN PROTEIN INTERACTION; PROTEIN SYNTHESIS; PROTEOMICS;

ANIMALS; CELL-FREE SYSTEM; CLONING, MOLECULAR; DNA, COMPLEMENTARY; DOSE-RESPONSE RELATIONSHIP, DRUG; FLUORESCENT DYES; GLASS; GLUTATHIONE; GLUTATHIONE TRANSFERASE; HELA CELLS; HUMANS; MICE; MICROSCOPY, FLUORESCENCE; MODELS, CHEMICAL; PROTEIN ARRAY ANALYSIS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; PUROMYCIN; RECOMBINANT FUSION PROTEINS;

EID: 0041663988     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200300444     Document Type: Conference Paper

References (54)

1. Pandey, A., Mann, M., Nature 2000, 405, 837-846.
2. von Mering, C., Krause, R., Snel, B., Cornell, M. et al., Nature 2002, 417, 399-403.
3. Uetz, P., Giot, L., Cagney, G., Mansfield, T. A. et al., Nature 2000, 403, 623-627.
4. Ito, T., Tashiro, K., Muta, S., Ozawa, R. et al., Proc. Natl. Acad. Sci. USA 2000, 97, 1143-1147.
5. Gavin, A.-C., Bösche, M., Krause, R., Grandi, P. et al., Nature 2002, 415, 141-147.
6. Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D. et al., Nature 2002, 415, 180-183.
7. Mrowka, R., Patzak, A., Herzel, H., Genome Res. 2001, 11, 1971-1973.
8. MacBeath, G., Schreiber, S. L., Science 2000, 289, 1760-1763.
9. Zhu, H., Bilgin, M., Bangham, R., Hall, D. et al., Science 2001, 293, 2101-2105.
10. Kodadek, T., Chem. Biol. 2001, 8, 105-115.
11. Büssow, K., Cahill, D., Nietfeld, W., Bancroft, D. et al., Nucleic Acids Res. 1998, 26, 5007-5008.
12. Lueking, A., Horn, M., Eickhoff, H., Büssow, K. et al., Anal. BioChem. 1999, 270, 103-111.
13. Holt, L. J., Büssow, K., Walter, G., Tomlinson, I. M., Nucleic Acids Res. 2000, 28, e72.
14. de Wildt, R. M. T., Mundy, C. R., Gorick, B. D., Tomlinson, I. M., Nat. Biotechnol. 2000, 18, 989-994.
15. Afanassiev, V., Hanemann, V., Wölfl, S., Nucleic Acids Res. 2000, 28, e66.
16. Arenkov, P., Kukhtin, A., Gemmell, A., Voloshchuk, S. et al., Anal. Biochem. 2000, 278, 123-131.
17. Schweitzer, B., Wiltshire, S., Lambert, J., O'Malley, S. et al., Proc. Natl. Acad. Sci. USA 2000, 97, 10113-10119.
18. Joos, T. O., Schrenk, M., Höpfl, R, Kröger, K. et al., Electrophoresis 2000, 21, 2641-2650.
19. Knezevic, V., Leethanakul, C., Bichsel, V. E., Worth, J. M. et al., Proteomics 2001, 1, 1271-1278.
20. Madoz-Gúrpide, J., Wang, H., Misek, D. E., Brichory, F., Hanash, S. M., Proteomics 2001, 1, 1279-1287.
21. Haab, B. B., Dunham, M. J., Brown, P. O., Genome Biol. 2001, 2, Research 0004.1-0004.13.
22. Belov, L., de la Vega, O., dos Remedios, C. G., Mulligan, S. P., Christopherson, R. I., Cancer Res. 2001, 61, 4483-4489.
23. Tam, S. W., Wiese, R., Lee, S., Gilmore, J., Kumble, K. D., J. Immunol. Methods 2002, 261, 157-165.
24. Weng, S., Gu, K., Hammond, P. W., Lohse, P. et al., Proteomics 2002, 2, 48-57.
25. Pawlak, M., Schick, E., Bopp, M. A., Schneider, M. J. et al., Proteomics 2002, 2, 383-393.
26. Angenendt, P., Glökler, J., Murphy, D., Lehrach, H., Cahill, D. J., Anal. Biochem. 2002, 309, 253-260.
27. Miyamoto-Sato, E., Nemoto, N., Kobayashi, K., Yanagawa, H., Nucleic Acids Res. 2000, 28, 1176-1182.
28. Nemoto, N., Miyamoto-Sato, E., Yanagawa, H., FEBS Lett. 1999, 462, 43-46.
29. Doi, N., Takashima, H., Kinjo, M., Sakata, K. et al., Genome Res. 2002, 12, 487-492.
30. Madin, K., Sawasaki, T., Ogasawara, T., Endo, Y., Proc. Natl. Acad. Sci. USA 2000, 97, 559-564.
31. Sawasaki, T., Ogasawara, T., Morishita, R., Endo, Y., Proc. Natl. Acad. Sci. USA 2002, 99, 14652-14657.
32. Angel, P., Karin, M., Biochim. Biophys. Acta 1991, 1072, 129-157.
33. García, E., Marcos-Gutiérrez, C., del Mar Lorente, M., Moreno, J. C., Vidal, M., EMBO J. 1999, 18, 3404-3418.
34. Stofko-Hahn, R. E., Carr, D. W., Scott, J. D., FEBS Lett 1992, 302, 274-278.
35. Doi, N., Yanagawa, H., FEBS Lett 1999, 457, 227-230.
36. Ikeda, S., Salto, I., Sugiyama, H., Tetrahedron Lett. 1998, 39, 5975-5978.
37. Schägger, H., von Jagow, G., Anal. Biochem. 1987, 166, 368-379.
38. Jankowski, T., Janka, R., in: Rigler, R., Elson, E. L. (Eds.), Fluorescence Correlation Spectroscopy - Theory and Applications, Springer, Boston 2001, pp. 331-345.
39. Elbert, D. L., Hubbell, J. A., Chem. Biol. 1998, 5, 177-183.
40. Ruiz-Taylor, L. A., Martin, T. L., Zaugg, F. G., Witte, K. et al., Proc. Natl. Acad. Sci. USA 2001, 98, 852-857.
41. Kenausis, G. L., Vörös, J., Elbert, D. L., Huang, N. et al., J. Phys. Chem. B 2000, 104, 3298-3309.
42. Schena, M., Shalon, D., Davis, R. W., Brown, P. O., Science 1995, 270, 467-470.
43. In Vitro Expression Guide, Promega, Madison, WI 2000, pp. 56-61.
44. Kiga, D., Sakamoto, K., Kodama, K., Kigawa, T. et al., Proc. Natl. Acad. Sci. USA 2002, 99, 9715-9723.
45. Zozulya, S., Lioubin, M., Hill, R. J., Abram, C., Gishizky, M. L., Nat. Biotechnol. 1999, 17, 1193-1198.
46. Doi, N., Yanagawa, H., Comb. Chem. High Throughput Screen 2001, 4, 497-509.
47. Hanes, J., Plückthun, A., Proc. Natl. Acad. Sci. USA 1997, 94, 4937-4942.
48. Roberts, R. W., Szostak, J. W., Proc. Natl. Acad. Sci. USA 1997, 94, 12297-12302.
49. Nemoto, N., Miyamoto-Sato, E., Husimi, Y., Yanagawa, H., FEBS Lett 1997, 414, 405-408.
50. Ohuchi, S., Nakano, H., Yamane, T., Nucleic Acids Res. 1998, 26, 4339-4346.
51. Kuruvilla, F. G., Shamji, A. F., Sternson, S. M., Hergenrother, R J., Schreiber, S. L., Nature 2002, 416, 653-656.
52. Ziauddin, J., Sabatini, D. M., Nature 2001, 411, 107-110.
53. Gite, S., Mamaev, S., Olejnik, J., Rothschild, K., Anal. Biochem. 2000, 279, 218-225.
54. Heyduk, T., Curr. Opin. Biotechnol. 2002, 13, 292-296.