-
1
-
-
0029789393
-
Catechol dioxygenases from Escherichia coli (MhpB) and Al-caligenes eutrophus (MpcI): Sequence analysis and biochemical properties of a third family of extradiol dioxygenases
-
Spence, E. L., Kawamukai, M., Sanvoisin, J., Braven, H., and Bugg, T. D. H., Catechol dioxygenases from Escherichia coli (MhpB) and Al-caligenes eutrophus (MpcI): sequence analysis and biochemical properties of a third family of extradiol dioxygenases. J. Bacteriol., 178, 5249-5256 (1996).
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5249-5256
-
-
Spence, E.L.1
Kawamukai, M.2
Sanvoisin, J.3
Braven, H.4
Bugg, T.D.H.5
-
2
-
-
0029846961
-
Evolutionary relationships among extradiol dioxygenases
-
Eltis, L. D., and Bolin, J. T., Evolutionary relationships among extradiol dioxygenases. J. Bacteriol., 178, 5930-5937 (1996).
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5930-5937
-
-
Eltis, L.D.1
Bolin, J.T.2
-
3
-
-
0002955249
-
Three-dimensional structure of 2,3-dihydroxy-biphenyl dioxygenase (BphC enzyme) from Pseudomonas sp. strain KKS102 having polychlorinated biphenyl (PCB)-degrading activity
-
Sugiyama, K., Senda, T., Narita, H., Yamamoto, T., Kimbara, K., Fukuda, M., Yano, K., and Mitsui, Y., Three-dimensional structure of 2,3-dihydroxy-biphenyl dioxygenase (BphC enzyme) from Pseudomonas sp. strain KKS102 having polychlorinated biphenyl (PCB)-degrading activity. Proc. Jap. Acad., B71, 32-35 (1995).
-
(1995)
Proc. Jap. Acad.
, vol.B71
, pp. 32-35
-
-
Sugiyama, K.1
Senda, T.2
Narita, H.3
Yamamoto, T.4
Kimbara, K.5
Fukuda, M.6
Yano, K.7
Mitsui, Y.8
-
4
-
-
0030008087
-
Three-dimensional structure of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. Strain KKS102
-
Senda, T., Sugiyama, K., Narita, H., Yamamoto, T., Kimbara, K., Fukuda, M., Sato, M., Yano, K., and Mitsui, Y., Three-dimensional structure of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102. J. Mol. Biol., 255, 735-752 (1996).
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 735-752
-
-
Senda, T.1
Sugiyama, K.2
Narita, H.3
Yamamoto, T.4
Kimbara, K.5
Fukuda, M.6
Sato, M.7
Yano, K.8
Mitsui, Y.9
-
5
-
-
0028862027
-
Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad
-
Han, S., Eltis, L. D., Timmis, K. N., Muchmore, S. W., and Bolin, J. T., Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad. Science, 270, 976-980 (1995).
-
(1995)
Science
, vol.270
, pp. 976-980
-
-
Han, S.1
Eltis, L.D.2
Timmis, K.N.3
Muchmore, S.W.4
Bolin, J.T.5
-
6
-
-
0033556265
-
An archetypical extradiol-cleaving catecholic dioxygenase: The crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Pseudomonas putida mt-2
-
Kita, A., Kita, S., Fujisawa, I., Inaka, K., Ishida, T., Horiike, K., Nozaki, M., and Miki, K., An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Pseudomonas putida mt-2. Structure, 7, 25-34 (1999).
-
(1999)
Structure
, vol.7
, pp. 25-34
-
-
Kita, A.1
Kita, S.2
Fujisawa, I.3
Inaka, K.4
Ishida, T.5
Horiike, K.6
Nozaki, M.7
Miki, K.8
-
7
-
-
0033566802
-
Crystal structure of an aromatic ring opening dioxygenase LigAB, a pro-tocatechuate 4,5-dioxygenase, under aerobic conditions
-
Sugimoto, K., Senda, T., Aoshima, H., Masai, E., Fukuda, M., and Mitsui, Y., Crystal structure of an aromatic ring opening dioxygenase LigAB, a pro-tocatechuate 4,5-dioxygenase, under aerobic conditions. Structure, 7, 953-965 (1999).
-
(1999)
Structure
, vol.7
, pp. 953-965
-
-
Sugimoto, K.1
Senda, T.2
Aoshima, H.3
Masai, E.4
Fukuda, M.5
Mitsui, Y.6
-
8
-
-
84950794062
-
Biodegradation of carbazole by Pseudomonas spp. CA06 and CA10
-
Ouchiyama, N., Kimura, T., Omori, T., and Kodama, T., Biodegradation of carbazole by Pseudomonas spp. CA06 and CA10. Biosci. Biotechnol. Biochem., 57, 455-460 (1993).
-
(1993)
Biosci. Biotechnol. Biochem.
, vol.57
, pp. 455-460
-
-
Ouchiyama, N.1
Kimura, T.2
Omori, T.3
Kodama, T.4
-
9
-
-
0030855128
-
Cloning of genes involved in carbazole degradation of Pseudomonas sp. Strain CA10: Nucleotide sequence of genes and characterization of meta-cleavage enzymes and hydrolase
-
Sato, S., Ouchiyama, N., Kimura, T., Nojiri, H., Yamane, H., and Omori, T., Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequence of genes and characterization of meta-cleavage enzymes and hydrolase. J. Bacteriol., 179, 4841-4849 (1997).
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4841-4849
-
-
Sato, S.1
Ouchiyama, N.2
Kimura, T.3
Nojiri, H.4
Yamane, H.5
Omori, T.6
-
10
-
-
0035432248
-
Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by two types of bacteria having angular dioxygenases with different features
-
Habe, H., Chung, J. S., Lee, J. H., Kasuga, K., Yoshida, T., Nojiri, H., and Omori, T., Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by two types of bacteria having angular dioxygenases with different features. Appl. Environ. Microbiol., 67, 3610-3617 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3610-3617
-
-
Habe, H.1
Chung, J.S.2
Lee, J.H.3
Kasuga, K.4
Yoshida, T.5
Nojiri, H.6
Omori, T.7
-
11
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC119 vectors
-
Yanisch-Perron, C., Vieira, J., and Messing, J., Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC119 vectors. Gene, 33, 103-119 (1985).
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
12
-
-
0003903343
-
-
2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
-
Sambrook, J., Fritsch, E. F., and Maniatis, T., Molecular cloning: a laboratory manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (1989).
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
13
-
-
0018800089
-
A rapid alkaline extraction procedure for screening recombinant plasmid DNA
-
Birnboim, H. C., and Doly, J., A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res., 7, 1513-1523 (1979).
-
(1979)
Nucleic Acids Res.
, vol.7
, pp. 1513-1523
-
-
Birnboim, H.C.1
Doly, J.2
-
14
-
-
0020959710
-
Studies on transformation of Escherichia coli with plasmids
-
Hanahan, D., Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol., 166, 557-580 (1983).
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 557-580
-
-
Hanahan, D.1
-
15
-
-
0016610995
-
Determination of cistron specificity in bacterial ribosomes
-
Shine, J., and Dalgarno, L., Determination of cistron specificity in bacterial ribosomes. Nature, 254, 34-38 (1975).
-
(1975)
Nature
, vol.254
, pp. 34-38
-
-
Shine, J.1
Dalgarno, L.2
-
16
-
-
0036545396
-
Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10
-
Nojiri, H., Maeda, K., Sekiguchi, H., Urata, M., Shintani, M., Yoshida, T., Habe, H., and Omori, T., Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10. Biosci. Biotechnol. Biochem., 66, 897-901 (2002).
-
(2002)
Biosci. Biotechnol. Biochem.
, vol.66
, pp. 897-901
-
-
Nojiri, H.1
Maeda, K.2
Sekiguchi, H.3
Urata, M.4
Shintani, M.5
Yoshida, T.6
Habe, H.7
Omori, T.8
-
17
-
-
0017184389
-
A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M., A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem., 72, 248-254 (1976).
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
18
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London), 227, 680-685 (1970).
-
(1970)
Nature (London)
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
19
-
-
0023472472
-
Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
-
Schagger, H., and Jagow, G. V., Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem., 166, 368-379 (1987).
-
(1987)
Anal. Biochem.
, vol.166
, pp. 368-379
-
-
Schagger, H.1
Jagow, G.V.2
-
20
-
-
0027509616
-
Purification and crystallization of 2,3-dihydroxybiphenyl 1,2-dioxygenase
-
Eltis, L. D., Hofmann, B., Hecht, H.-J., Lunsdorf, H., and Timmis, K. N., Purification and crystallization of 2,3-dihydroxybiphenyl 1,2-dioxygenase. J. Biol. Chem., 268, 2727-2732 (1993).
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 2727-2732
-
-
Eltis, L.D.1
Hofmann, B.2
Hecht, H.-J.3
Lunsdorf, H.4
Timmis, K.N.5
-
21
-
-
0025255092
-
Buffers: Principles and practice
-
Stoll, V. S., and Blanchard, J. S., Buffers: principles and practice. Methods Enzymol., 182, 24-38 (1990).
-
(1990)
Methods Enzymol.
, vol.182
, pp. 24-38
-
-
Stoll, V.S.1
Blanchard, J.S.2
-
22
-
-
0030744612
-
Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. Strain CA10
-
Sato, S., Nam, J.-W., Kasuga, K., Nojiri, H., Yamane, H., and Omori, T., Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10. J. Bac-teriol., 179, 4850-4858 (1997).
-
(1997)
J. Bac-Teriol.
, vol.179
, pp. 4850-4858
-
-
Sato, S.1
Nam, J.-W.2
Kasuga, K.3
Nojiri, H.4
Yamane, H.5
Omori, T.6
-
23
-
-
0032940805
-
Diverse oxygenations catalyzed by carba-zole 1,9a-dioxygenase from Pseudomonas sp. Strain CA10
-
Nojiri, H., Nam, J.-W., Kosaka, M., Morii, K., Takemura, T., Furihata, K., Yamane, H., and Omori, T., Diverse oxygenations catalyzed by carba-zole 1,9a-dioxygenase from Pseudomonas sp. strain CA10. J. Bacteriol., 181, 3105-3133 (1999).
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3105-3133
-
-
Nojiri, H.1
Nam, J.-W.2
Kosaka, M.3
Morii, K.4
Takemura, T.5
Furihata, K.6
Yamane, H.7
Omori, T.8
-
24
-
-
0012484786
-
Purification and characterization of meta-cleavage hydrolase from carbazole degrader Pseudomonas resinovorans strain CA10
-
Nojiri, H., Taira, H., Iwata, K., Morii, K., Nam, J.-W., Yoshida, T., Habe, H., Nakamura, S., Shimizu, K., Yamane, H., and Omori, T., Purification and characterization of meta-cleavage hydrolase from carbazole degrader Pseudomonas resinovorans strain CA10. Biosci. Biotechnol. Biochem., 67, 36-45 (2003).
-
(2003)
Biosci. Biotechnol. Biochem.
, vol.67
, pp. 36-45
-
-
Nojiri, H.1
Taira, H.2
Iwata, K.3
Morii, K.4
Nam, J.-W.5
Yoshida, T.6
Habe, H.7
Nakamura, S.8
Shimizu, K.9
Yamane, H.10
Omori, T.11
-
25
-
-
0013969823
-
The metabolism of cresols by species of
-
Bayly, R. C., Dagley, S., and Gibson, D. T., The metabolism of cresols by species of Pseudomonas. Biochem. J., 101, 293-301 (1966).
-
(1966)
Pseudomonas. Biochem. J.
, vol.101
, pp. 293-301
-
-
Bayly, R.C.1
Dagley, S.2
Gibson, D.T.3
-
26
-
-
0014941894
-
Purification and properties of protocatechuate 4,5-dioxygenase
-
Ono, K., Nozaki, M., and Hayaishi, O., Purification and properties of protocatechuate 4,5-dioxygenase. Biochem. Biophys. Acta, 220, 224-238 (1970).
-
(1970)
Biochem. Biophys. Acta
, vol.220
, pp. 224-238
-
-
Ono, K.1
Nozaki, M.2
Hayaishi, O.3
-
27
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom, M. A., Stuart, A. C., Fiser, A., Sanchez, R., Melo, F., and Sali, A., Comparative protein structure modeling of genes and genomes. Annu. Biophys. Biomol. Struct., 29, 291-325 (2000).
-
(2000)
Annu. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
28
-
-
0034284122
-
Recent changes to RasMol, recombining the variants
-
Bernstein, H. J., Recent changes to RasMol, recombining the variants. Trends Biochem. Sci., 25, 453-455 (2000).
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 453-455
-
-
Bernstein, H.J.1
-
29
-
-
0030872719
-
Rapid purification of an active recombinant His-tagged 2,3-dihydroxybiphenyl 1,2-dioxygenase from Pseudomonas putida OU83
-
Khan, A. A., Nawaz, M. S., and Cerniglia, C. E., Rapid purification of an active recombinant His-tagged 2,3-dihydroxybiphenyl 1,2-dioxygenase from Pseudomonas putida OU83. FEMS Microbiol. Lett., 152, 23-29 (1997).
-
(1997)
FEMS Microbiol. Lett.
, vol.152
, pp. 23-29
-
-
Khan, A.A.1
Nawaz, M.S.2
Cerniglia, C.E.3
-
30
-
-
0027442082
-
Characterization of 2,2',3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. Strain RW1
-
Happe, B., Eltis, L. D., Poth, H., Hedderich, R., and Timmis, K. N., Characterization of 2,2',3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1. J. Bacteriol., 175, 7313-7320 (1993).
-
(1993)
J. Bacteriol.
, vol.175
, pp. 7313-7320
-
-
Happe, B.1
Eltis, L.D.2
Poth, H.3
Hedderich, R.4
Timmis, K.N.5
-
31
-
-
0031020094
-
Characterization of three distinct extradiol dioxygenases involved in mineralization of dibenzofuran by Terrabacter sp. Strain DPO360
-
Schmid, A., Rothe, B., Altenbuchner, J., Ludwig, W., and Engesser, K. H., Characterization of three distinct extradiol dioxygenases involved in mineralization of dibenzofuran by Terrabacter sp. strain DPO360. J. Bacteriol., 179, 53-62 (1997).
-
(1997)
J. Bacteriol.
, vol.179
, pp. 53-62
-
-
Schmid, A.1
Rothe, B.2
Altenbuchner, J.3
Ludwig, W.4
Engesser, K.H.5
-
32
-
-
0028840818
-
Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6
-
Heiss, G., Stolz, A., Kuhm, A. E., Muller, C., Klein, J., Altenbuchner, J., and Knackmuss, H. J., Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6. J. Bacteriol., 177, 5865-5871 (1995).
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5865-5871
-
-
Heiss, G.1
Stolz, A.2
Kuhm, A.E.3
Muller, C.4
Klein, J.5
Altenbuchner, J.6
Knackmuss, H.J.7
-
33
-
-
0037127253
-
The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates
-
Vaillancourt, F. H., Labbe, G., Drouin, N. M., Fortin, P. D., and Eltis, L. D., The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates. J. Biol. Chem., 277, 2019-2027 (2002)
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 2019-2027
-
-
Vaillancourt, F.H.1
Labbe, G.2
Drouin, N.M.3
Fortin, P.D.4
Eltis, L.D.5
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