-
2
-
-
0013780715
-
The twisted circular form of polyoma virus DNA
-
J. Vinograd, J. Lebowitz, R. Radloff, R. Watson, and P. Laipis, The twisted circular form of polyoma virus DNA, Proc. Natl. Acad. Sci. (USA) 53:1104-1111 (1965).
-
(1965)
Proc. Natl. Acad. Sci. (USA)
, vol.53
, pp. 1104-1111
-
-
Vinograd, J.1
Lebowitz, J.2
Radloff, R.3
Watson, R.4
Laipis, P.5
-
3
-
-
0027159512
-
Reverse gyrase: A helicase-like domain and a type I topoisomerase in the same polypeptide
-
F. Confalonieri, C. Elie, M. Nadal, C. de la Tour, P. Forterre, and M. Duguet, Reverse gyrase: A helicase-like domain and a type I topoisomerase in the same polypeptide, Proc. Natl. Acad. Sci. (USA) 90:4751-4757 (1993).
-
(1993)
Proc. Natl. Acad. Sci. (USA)
, vol.90
, pp. 4751-4757
-
-
Confalonieri, F.1
Elie, C.2
Nadal, M.3
De La Tour, C.4
Forterre, P.5
Duguet, M.6
-
4
-
-
0000751914
-
Self-linking and the gauss integral in higher dimensions
-
J. H. White, Self-linking and the gauss integral in higher dimensions, Am. J. Math. 91:693-728 (1969).
-
(1969)
Am. J. Math.
, vol.91
, pp. 693-728
-
-
White, J.H.1
-
6
-
-
0026520669
-
DNA loops: Structural and functional properties of scaffold-attached regions
-
M. Roberge and S. M. Gasser, DNA loops: Structural and functional properties of scaffold-attached regions, Molecular Microbiology 6:419-423 (1992).
-
(1992)
Molecular Microbiology
, vol.6
, pp. 419-423
-
-
Roberge, M.1
Gasser, S.M.2
-
7
-
-
0004246255
-
-
Benjamin/Cummings Publishing Comp., New York
-
J. D. Watson, N. H. Hopkins, J. W. Roberts, J. A. Steitz, and A. M. Weiner, Molecular Biology of the Gene, 4th ed. (Benjamin/Cummings Publishing Comp., New York, 1987).
-
(1987)
Molecular Biology of the Gene, 4th Ed.
-
-
Watson, J.D.1
Hopkins, N.H.2
Roberts, J.W.3
Steitz, J.A.4
Weiner, A.M.5
-
8
-
-
0027461357
-
Negative supercoiling and nucleosome cores. I. The effect of negative supercoiling on the efficiency of nucleosome core formation in vitro
-
H.-G. Patterton and C. von Holt, Negative supercoiling and nucleosome cores. I. The effect of negative supercoiling on the efficiency of nucleosome core formation in vitro, J. Mol. Biol. 229:623-636 (1993).
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 623-636
-
-
Patterton, H.-G.1
Von Holt, C.2
-
9
-
-
0024279845
-
Transcription generates positively and negatively supercoiled domains in the template
-
H.-Y. Wu, S. Shyy, J. C. Wang, and L. F. Liu, Transcription generates positively and negatively supercoiled domains in the template, Cell 53:433-440 (1988).
-
(1988)
Cell
, vol.53
, pp. 433-440
-
-
Wu, H.-Y.1
Shyy, S.2
Wang, J.C.3
Liu, L.F.4
-
10
-
-
0027465601
-
Local domains of supercoiling activate a eukaryotic promoter in vivo
-
M. Dunaway and E. A. Ostrander, Local domains of supercoiling activate a eukaryotic promoter in vivo, Nature 361:746-748 (1993).
-
(1993)
Nature
, vol.361
, pp. 746-748
-
-
Dunaway, M.1
Ostrander, E.A.2
-
11
-
-
0031009397
-
Chromatin remodeling and transcription
-
T. Tsukiyama and C. Wu, Chromatin remodeling and transcription, Curr. Op. Genet. Dev. 7:182-191 (1997).
-
(1997)
Curr. Op. Genet. Dev.
, vol.7
, pp. 182-191
-
-
Tsukiyama, T.1
Wu, C.2
-
13
-
-
0030992537
-
Local DNA stretching mimics the distortion caused by the tata-box binding protein
-
A. Lebrun, Z. Shakked, and R. Lavery, Local DNA stretching mimics the distortion caused by the tata-box binding protein, Proc. Natl. Acad. Sci. (USA) 94:2993-2998 (1997).
-
(1997)
Proc. Natl. Acad. Sci. (USA)
, vol.94
, pp. 2993-2998
-
-
Lebrun, A.1
Shakked, Z.2
Lavery, R.3
-
14
-
-
0030014783
-
DNA topoisomerases
-
J. C. Wang, DNA topoisomerases. Annu. Rev. Biochem. 65:635-692 (1996).
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 635-692
-
-
Wang, J.C.1
-
15
-
-
0001074488
-
Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis
-
W. Keller, Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis, Proc. Natl. Acad. Sci. (USA) 72:4876-4880 (1975).
-
(1975)
Proc. Natl. Acad. Sci. (USA)
, vol.72
, pp. 4876-4880
-
-
Keller, W.1
-
16
-
-
0027279063
-
Probability of DNA knotting and the effective diameter of the DNA double helix
-
V. V. Rybenkov, N. R. Cozzarelli, and A. V. Vologodskii, Probability of DNA knotting and the effective diameter of the DNA double helix. Proc. Natl. Acad. Sci. (USA) 90:5307-5311 (1993).
-
(1993)
Proc. Natl. Acad. Sci. (USA)
, vol.90
, pp. 5307-5311
-
-
Rybenkov, V.V.1
Cozzarelli, N.R.2
Vologodskii, A.V.3
-
17
-
-
0026495432
-
Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads
-
S. B. Smith, L. Finzi, and C. Bustamante, Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads, Science 258:1122-1126 (1992).
-
(1992)
Science
, vol.258
, pp. 1122-1126
-
-
Smith, S.B.1
Finzi, L.2
Bustamante, C.3
-
18
-
-
0029416931
-
Transcription against an applied force
-
H. Yin, M. D. Wang, K. Svoboda, R. Landick, S. M. Block, and J. Gelles, Transcription against an applied force, Science 270:1653-1656 (1995).
-
(1995)
Science
, vol.270
, pp. 1653-1656
-
-
Yin, H.1
Wang, M.D.2
Svoboda, K.3
Landick, R.4
Block, S.M.5
Gelles, J.6
-
19
-
-
0029937922
-
The elasticity of a single supercoiled DNA molecule
-
T. R. Strick, J.-F. Allemand, D. Bensimon, A. Bensimon, and V. Croquette, The elasticity of a single supercoiled DNA molecule, Science 271:1835-1837 (1996).
-
(1996)
Science
, vol.271
, pp. 1835-1837
-
-
Strick, T.R.1
Allemand, J.-F.2
Bensimon, D.3
Bensimon, A.4
Croquette, V.5
-
20
-
-
0028766419
-
Relaxation of a single DNA molecule observed by optical microscopy
-
T. T. Perkins, S. R. Quake, D. E. Smith, and S. Chu, Relaxation of a single DNA molecule observed by optical microscopy, Science 264:822-826 (1994).
-
(1994)
Science
, vol.264
, pp. 822-826
-
-
Perkins, T.T.1
Quake, S.R.2
Smith, D.E.3
Chu, S.4
-
21
-
-
0028766432
-
Direct observation of tube-like motion of a single polymer chain
-
T. T. Perkins. D. E. Smith, and S. Chu, Direct observation of tube-like motion of a single polymer chain, Science 264:819-822 (1994).
-
(1994)
Science
, vol.264
, pp. 819-822
-
-
Perkins, T.T.1
Smith, D.E.2
Chu, S.3
-
22
-
-
0028032302
-
Alignment and sensitive detection of DNA by a moving interface
-
A. Bensimon, A. J. Simon, A. Chiffaudel, V. Croquette, F. Heslot, and D. Bensimon, Alignment and sensitive detection of DNA by a moving interface, Science 265:2096-2098 (1994).
-
(1994)
Science
, vol.265
, pp. 2096-2098
-
-
Bensimon, A.1
Simon, A.J.2
Chiffaudel, A.3
Croquette, V.4
Heslot, F.5
Bensimon, D.6
-
23
-
-
0026207533
-
Laser manipulation of atoms and particles
-
S. Chu, Laser manipulation of atoms and particles, Science 253:861-866 (1991).
-
(1991)
Science
, vol.253
, pp. 861-866
-
-
Chu, S.1
-
24
-
-
0030064676
-
DNA: An extensible molecule
-
P. Cluzel, A. Lebrun, C. Heller, R. Lavery, J.-L. Viovy, D. Chatenay, and F. Caron, DNA: An extensible molecule, Science 271:792-794 (1996).
-
(1996)
Science
, vol.271
, pp. 792-794
-
-
Cluzel, P.1
Lebrun, A.2
Heller, C.3
Lavery, R.4
Viovy, J.-L.5
Chatenay, D.6
Caron, F.7
-
28
-
-
0028071373
-
Entropic elasticity of λ-phage DNA
-
C. Bustamante, J. F. Marko, E. D. Siggia, and S. Smith, Entropic elasticity of λ-phage DNA, Science 265:1599-1600 (1994).
-
(1994)
Science
, vol.265
, pp. 1599-1600
-
-
Bustamante, C.1
Marko, J.F.2
Siggia, E.D.3
Smith, S.4
-
30
-
-
0039066728
-
Estimating the persistence length of a worm-like chain molecule from force-extension measurements
-
C. Bouchiat, M. D. Wang, J.-F. Allemand, T. R. Strick, S. M. Block, and V. Croquette, Estimating the persistence length of a Worm-Like Chain molecule from force-extension measurements, submitted to Biophys. J. (1998).
-
(1998)
Biophys. J.
-
-
Bouchiat, C.1
Wang, M.D.2
Allemand, J.-F.3
Strick, T.R.4
Block, S.M.5
Croquette, V.6
-
31
-
-
0031047888
-
Stretching DNA with optical tweezers
-
M. D. Wang, H. Yin, R. Landick, J. Gelles, and S. M. Block, Stretching DNA with optical tweezers, Biophys. J. 72:1335-1346 (1997).
-
(1997)
Biophys. J.
, vol.72
, pp. 1335-1346
-
-
Wang, M.D.1
Yin, H.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
32
-
-
0030947539
-
Ionic effects on the elasticity of single DNA molecules
-
C. Baumann, S. Smith, V. Bloomfield, and C. Bustamante, Ionic effects on the elasticity of single DNA molecules, Proc. Natl. Acad. Sci. (USA) 94:6185-6190 (1997).
-
(1997)
Proc. Natl. Acad. Sci. (USA)
, vol.94
, pp. 6185-6190
-
-
Baumann, C.1
Smith, S.2
Bloomfield, V.3
Bustamante, C.4
-
33
-
-
0030024985
-
Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
-
S. B. Smith. Y. Cui, and C. Bustamante, Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules, Science 271:795-799 (1996).
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
35
-
-
37149001327
-
DNA under high tension: Overstretching, undertwisting and relaxation dynamics
-
J. Marko, DNA under high tension: Overstretching, undertwisting and relaxation dynamics, Phys. Rev. E 57:2134-2149 (1998).
-
(1998)
Phys. Rev. E
, vol.57
, pp. 2134-2149
-
-
Marko, J.1
-
37
-
-
0003965590
-
-
Scientific American Books, Inc.
-
J. D. Watson, M. Gilman, J. Witkowski, and M. Zoller, Recombinant DNA (Scientific American Books, Inc., 1992).
-
(1992)
Recombinant DNA
-
-
Watson, J.D.1
Gilman, M.2
Witkowski, J.3
Zoller, M.4
-
39
-
-
0031895463
-
Behavior of supercoiled DNA
-
T. R. Strick, J.-F. Allemand, D. Bensimon, and V. Croquette, Behavior of supercoiled DNA, Biophys. J. 74:2016-2028 (1998).
-
(1998)
Biophys. J.
, vol.74
, pp. 2016-2028
-
-
Strick, T.R.1
Allemand, J.-F.2
Bensimon, D.3
Croquette, V.4
-
40
-
-
0025776150
-
Local supercoil-stabilized structures
-
E. Palecek, Local supercoil-stabilized structures, Crit. Rev. Biochem. Mol. Biol. 26:151-226 (1991).
-
(1991)
Crit. Rev. Biochem. Mol. Biol.
, vol.26
, pp. 151-226
-
-
Palecek, E.1
-
41
-
-
0342927819
-
Stable DNA unwinding, not breathing, accounts for single-strand-specific nuclease hypersensitivity of specific A + T-rich sequences
-
D. Kowalski, D. Natale, and M. Eddy, Stable DNA unwinding, not breathing, accounts for single-strand-specific nuclease hypersensitivity of specific A + T-rich sequences, Proc. Natl. Acad. Sci. (USA) 85:9464-9468 (1988).
-
(1988)
Proc. Natl. Acad. Sci. (USA)
, vol.85
, pp. 9464-9468
-
-
Kowalski, D.1
Natale, D.2
Eddy, M.3
-
42
-
-
0026708149
-
Energetics of the strand separation transition in superhelical DNA
-
C. J. Benham, Energetics of the strand separation transition in superhelical DNA, J. Mol. Biol. 225:835-847 (1992).
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 835-847
-
-
Benham, C.J.1
-
43
-
-
0025363121
-
Structure of plectonemically supercoiled DNA
-
T. C. Boles, J. H. White, and N. R. Cozzarelli, Structure of plectonemically supercoiled DNA, J. Mol. Biol. 213:931-951 (1990).
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 931-951
-
-
Boles, T.C.1
White, J.H.2
Cozzarelli, N.R.3
-
44
-
-
0028000456
-
Fluctuations and supercoiling of DNA
-
J. F. Marko and E. D. Siggia, Fluctuations and supercoiling of DNA, Science 265:506-508 (1994).
-
(1994)
Science
, vol.265
, pp. 506-508
-
-
Marko, J.F.1
Siggia, E.D.2
-
45
-
-
11744311356
-
Statistical mechanics of supercoiled DNA
-
J. F. Marko and E. D. Siggia, Statistical mechanics of supercoiled DNA, Phvx. Rev. E 52:2912-2938 (1995).
-
(1995)
Phvx. Rev. E
, vol.52
, pp. 2912-2938
-
-
Marko, J.F.1
Siggia, E.D.2
-
46
-
-
0000350996
-
Supercoiled and braided DNA under tension
-
J. F. Marko, Supercoiled and braided DNA under tension, Phys. Rev. E 55:1758-1772 (1997).
-
(1997)
Phys. Rev. E
, vol.55
, pp. 1758-1772
-
-
Marko, J.F.1
-
47
-
-
11744306627
-
Elasticity model of a supercoiled DNA molecule
-
C Bouchiat and M. Mézard, Elasticity model of a supercoiled DNA molecule. Phys. Rev. Lett. 80:1556-1559 (1998).
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 1556-1559
-
-
Bouchiat, C.1
Mézard, M.2
-
48
-
-
0031474159
-
Torsional directed walks, entropic elasticity and DNA twist stillness
-
J. D. Moroz and P. Nelson, Torsional directed walks, entropic elasticity and DNA twist stillness, Proc. Natl. Acad. Sci. (USA) 94:14418-14422 (1998).
-
(1998)
Proc. Natl. Acad. Sci. (USA)
, vol.94
, pp. 14418-14422
-
-
Moroz, J.D.1
Nelson, P.2
-
49
-
-
0030586924
-
Force: A new structural control parameter?
-
D. Bensimon, Force: A new structural control parameter? Structure 4:885-889 (1996).
-
(1996)
Structure
, vol.4
, pp. 885-889
-
-
Bensimon, D.1
-
50
-
-
0030934380
-
Direct observation of the rotation of F1-ATPase
-
H. Noji, R. Yasuda, M. Yoshida, and K. Kinosita, Jr., Direct observation of the rotation of F1-ATPase, Nature 386:299-302 (1997).
-
(1997)
Nature
, vol.386
, pp. 299-302
-
-
Noji, H.1
Yasuda, R.2
Yoshida, M.3
Kinosita K., Jr.4
-
51
-
-
0032559298
-
Simultaneous observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin
-
A. Ishijima, H. Kojima, T Funatsu, M. Tokunaga, H. Higuchi, H. Tanaka, and T. Yanagida, Simultaneous observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin, Cell 92:161-171 (1998).
-
(1998)
Cell
, vol.92
, pp. 161-171
-
-
Ishijima, A.1
Kojima, H.2
Funatsu, T.3
Tokunaga, M.4
Higuchi, H.5
Tanaka, H.6
Yanagida, T.7
-
52
-
-
0027453868
-
Direct observation of kinesin stepping by optical trapping interferometry
-
K. Svoboda, C. F. Schmidt, B. J. Schnapp, and S. M. Block, Direct observation of kinesin stepping by optical trapping interferometry, Nature 365:721-727 (1993).
-
(1993)
Nature
, vol.365
, pp. 721-727
-
-
Svoboda, K.1
Schmidt, C.F.2
Schnapp, B.J.3
Block, S.M.4
|