메뉴 건너뛰기




Volumn 4, Issue 7, 2003, Pages

Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii

Author keywords

Additional Data File; Annotate ORFs; Fungal Database; Genome Annotation; Saccharomyces Genome Database

Indexed keywords

ARTICLE; BUDDING YEAST; CONTROLLED STUDY; EREMOTHECIUM GOSSYPII; FILAMENTOUS FUNGUS; FUNGUS; GENE MAPPING; GENE ORDER; HUMAN; INTRON; NONHUMAN; OPEN READING FRAME; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SYNTENY; AMINO ACID SEQUENCE; CHEMISTRY; COMPARATIVE STUDY; EXON; GENE FUSION; GENETICS; GENOME; GENOMICS; MOLECULAR GENETICS; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY;

EID: 0038825775     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2003-4-7-r45     Document Type: Article
Times cited : (89)

References (50)
  • 2
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: a platform for investigating biology
    • The C. elegans Sequencing Consortium: Genome sequence of the nematode C. elegans: a platform for investigating biology. Science. 1998, 282: 2012-2018. 10.1126/science.282.5396.2012. DOI: 10.1126/science.282.5396.2012
    • (1998) Science , vol.282 , pp. 2012-2018
  • 4
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 2000, 408: 796-815. 10.1038/35048692. DOI: 10.1038/35048692
    • (2000) Nature , vol.408 , pp. 796-815
  • 10
    • 85182693528 scopus 로고    scopus 로고
    • Sequence updates at SGD. [http://genome-www.stanford.edu/Saccharomyces/sequenceupdates.shtml]
    • Sequence Updates at SGD
  • 13
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • PID: 9192896
    • Wolfe KH, Shields DC: Molecular evidence for an ancient duplication of the entire yeast genome. Nature. 1997, 387: 708-713. 10.1038/42711. DOI: 10.1038/42711
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 14
    • 0038141986 scopus 로고    scopus 로고
    • Verification of a new gene on Saccharomyces cerevisiaeChromosome III
    • PID: 12794934
    • Zhang Z, Dietrich FS: Verification of a new gene on Saccharomyces cerevisiae Chromosome III. Yeast. 2003, 20: 731-738. 10.1002/yea.996. DOI: 10.1002/yea.996
    • (2003) Yeast , vol.20 , pp. 731-738
    • Zhang, Z.1    Dietrich, F.S.2
  • 16
    • 0035823109 scopus 로고    scopus 로고
    • Differential display analysis of mutants for the transcription factor Pdr1p regulating multidrug resistance in the budding yeast
    • PID: 11557050
    • Miura F, Yada T, Nakai K, Sakaki Y, Ito T: Differential display analysis of mutants for the transcription factor Pdr1p regulating multidrug resistance in the budding yeast. FEBS Lett. 2001, 505: 103-108. 10.1016/S0014-5793(01)02792-2. DOI: 10.1016/S0014-5793(01)02792-2
    • (2001) FEBS Lett , vol.505 , pp. 103-108
    • Miura, F.1    Yada, T.2    Nakai, K.3    Sakaki, Y.4    Ito, T.5
  • 20
    • 0037315819 scopus 로고    scopus 로고
    • Systematic discovery of new genes in the Saccharomyces cerevisiaegenome
    • PID: 12566404
    • Kessler MM, Zeng Q, Hogan S, Cook R, Morales AJ, Cottarel G: Systematic discovery of new genes in the Saccharomyces cerevisiae genome. Genome Res. 2003, 13: 264-271. 10.1101/gr.232903. DOI: 10.1101/gr.232903
    • (2003) Genome Res , vol.13 , pp. 264-271
    • Kessler, M.M.1    Zeng, Q.2    Hogan, S.3    Cook, R.4    Morales, A.J.5    Cottarel, G.6
  • 21
    • 0025181843 scopus 로고
    • The sn-1,2-diacylglycerol cholinephosphotransferase of Saccharomyces cerevisiae. Nucleotide sequence, transcriptional mapping, and gene product analysis of the CPT1 gene
    • PID: 2153142
    • Hjelmstad RH, Bell RM: The sn-1,2-diacylglycerol cholinephosphotransferase of Saccharomyces cerevisiae. Nucleotide sequence, transcriptional mapping, and gene product analysis of the CPT1 gene. J Biol Chem. 1990, 265: 1755-1764.
    • (1990) J Biol Chem , vol.265 , pp. 1755-1764
    • Hjelmstad, R.H.1    Bell, R.M.2
  • 22
    • 0036300794 scopus 로고    scopus 로고
    • A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution
    • PID: 11866506
    • Harrison P, Kumar A, Lan N, Echols N, Snyder M, Gerstein M: A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. J Mol Biol. 2002, 316: 409-419. 10.1006/jmbi.2001.5343. DOI: 10.1006/jmbi.2001.5343
    • (2002) J Mol Biol , vol.316 , pp. 409-419
    • Harrison, P.1    Kumar, A.2    Lan, N.3    Echols, N.4    Snyder, M.5    Gerstein, M.6
  • 23
    • 0031474466 scopus 로고    scopus 로고
    • Programmed translational frameshifting in a gene required for yeast telomere replication
    • PID: 9382847
    • Morris DK, Lundblad V: Programmed translational frameshifting in a gene required for yeast telomere replication. Curr Biol. 1997, 7: 969-976. DOI: 10.1016/S0960-9822(06)00416-7
    • (1997) Curr Biol , vol.7 , pp. 969-976
    • Morris, D.K.1    Lundblad, V.2
  • 24
    • 15644379785 scopus 로고    scopus 로고
    • Isolation and characterization of a novel actin filament-binding protein from Saccharomyces cerevisiae
    • PID: 9467951
    • Asakura T, Sasaki T, Nagano F, Satoh A, Obaishi H, Nishioka H, Imamura H, Hotta K, Tanaka K, Nakanishi H, et al: Isolation and characterization of a novel actin filament-binding protein from Saccharomyces cerevisiae. Oncogene. 1998, 16: 121-130. 10.1038/sj.onc.1201487. DOI: 10.1038/sj.onc.1201487
    • (1998) Oncogene , vol.16 , pp. 121-130
    • Asakura, T.1    Sasaki, T.2    Nagano, F.3    Satoh, A.4    Obaishi, H.5    Nishioka, H.6    Imamura, H.7    Hotta, K.8    Tanaka, K.9    Nakanishi, H.10
  • 27
    • 0032533774 scopus 로고    scopus 로고
    • Overlapping coding regions and transcriptional units of two essential chromosomal genes (CCT8, TRP1) in the fungal pathogen Candida albicans
    • PID: 9801300
    • Gerads M, Ernst JF: Overlapping coding regions and transcriptional units of two essential chromosomal genes (CCT8, TRP1) in the fungal pathogen Candida albicans. Nucleic Acids Res. 1998, 26: 5061-5066. 10.1093/nar/26.22.5061. DOI: 10.1093/nar/26.22.5061
    • (1998) Nucleic Acids Res , vol.26 , pp. 5061-5066
    • Gerads, M.1    Ernst, J.F.2
  • 29
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • PID: 9521923
    • Gordon D, Abajian C, Green P: Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8: 195-202. DOI: 10.1101/gr.8.3.195
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 30
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • PID: 9521922
    • Ewing B, Green P: Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8: 186-194. DOI: 10.1101/gr.8.3.186
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 31
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • PID: 9521921
    • Ewing B, Hillier L, Wendl MC, Green P: Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8: 175-185. DOI: 10.1101/gr.8.3.175
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 36
    • 85182709320 scopus 로고    scopus 로고
    • Stanford Genome Technology Center, Candida albicans sequence. [http://www-sequence.stanford.edu/group/candida/download.html]
    • Candida Albicans Sequence
  • 38
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • PID: 2231712
    • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215: 403-410. 10.1006/jmbi.1990.9999. DOI: 10.1016/S0022-2836(05)80360-2
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 39
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • PID: 3162770
    • Pearson WR, Lipman DJ: Improved tools for biological sequence comparison. Proc Natl Acad Sci USA. 1988, 85: 2444-2448. DOI: 10.1073/pnas.85.8.2444
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 40
    • 0028309899 scopus 로고
    • Using the FASTA program to search protein and DNA sequence databases
    • PID: 8004177
    • Pearson WR: Using the FASTA program to search protein and DNA sequence databases. Methods Mol Biol. 1994, 25: 365-389. 10.1385/0-89603-276-0:365.
    • (1994) Methods Mol Biol , vol.25 , pp. 365-389
    • Pearson, W.R.1
  • 42
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan - an integration platform for the signature-recognition methods in InterPro
    • PID: 11590104
    • Zdobnov EM, Apweiler R: InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics. 2001, 17: 847-848. 10.1093/bioinformatics/17.9.847. DOI: 10.1093/bioinformatics/17.9.847
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 45
    • 0032941754 scopus 로고    scopus 로고
    • Yeast mutants affecting possible quality control of plasma membrane proteins
    • PID: 10207082
    • Li Y, Kane T, Tipper C, Spatrick P, Jenness DD: Yeast mutants affecting possible quality control of plasma membrane proteins. Mol Cell Biol. 1999, 19: 3588-3599. DOI: 10.1128/MCB.19.5.3588
    • (1999) Mol Cell Biol , vol.19 , pp. 3588-3599
    • Li, Y.1    Kane, T.2    Tipper, C.3    Spatrick, P.4    Jenness, D.D.5
  • 46
    • 0037096154 scopus 로고    scopus 로고
    • Revisiting the yeast chromosome VI DNA sequence reveals a correction merging YFL007w and YFL006w to a single ORF
    • PID: 12185839
    • Robben J, Hertveldt K, Volckaert G: Revisiting the yeast chromosome VI DNA sequence reveals a correction merging YFL007w and YFL006w to a single ORF. Yeast. 2002, 19: 699-702. 10.1002/yea.870. DOI: 10.1002/yea.870
    • (2002) Yeast , vol.19 , pp. 699-702
    • Robben, J.1    Hertveldt, K.2    Volckaert, G.3
  • 47
    • 0034738588 scopus 로고    scopus 로고
    • The yeast mitochondrial transport proteins: new sequences and consensus residues, lack of direct relation between consensus residues and transmembrane helices, expression patterns of the transport protein genes, and protein-protein interactions with other proteins
    • PID: 10930523
    • Belenkiy R, Haefele A, Eisen MB, Wohlrab H: The yeast mitochondrial transport proteins: new sequences and consensus residues, lack of direct relation between consensus residues and transmembrane helices, expression patterns of the transport protein genes, and protein-protein interactions with other proteins. Biochim Biophys Acta. 2000, 1467: 207-218. 10.1016/S0005-2736(00)00222-4. DOI: 10.1016/S0005-2736(00)00222-4
    • (2000) Biochim Biophys Acta , vol.1467 , pp. 207-218
    • Belenkiy, R.1    Haefele, A.2    Eisen, M.B.3    Wohlrab, H.4
  • 48
    • 0027153257 scopus 로고
    • A U5 small nuclear ribonucleoprotein particle protein involved only in the second step of pre-mRNA splicing in Saccharomyces cerevisiae
    • PID: 8474454
    • Horowitz DS, Abelson J: A U5 small nuclear ribonucleoprotein particle protein involved only in the second step of pre-mRNA splicing in Saccharomyces cerevisiae. Mol Cell Biol. 1993, 13: 2959-2970. DOI: 10.1128/MCB.13.5.2959
    • (1993) Mol Cell Biol , vol.13 , pp. 2959-2970
    • Horowitz, D.S.1    Abelson, J.2
  • 49
    • 0034687701 scopus 로고    scopus 로고
    • Ama1p is a meiosis-specific regulator of the anaphase promoting complex/cyclosome in yeast
    • PID: 11114178
    • Cooper KF, Mallory MJ, Egeland DB, Jarnik M, Strich R: Ama1p is a meiosis-specific regulator of the anaphase promoting complex/cyclosome in yeast. Proc Natl Acad Sci USA. 2000, 97: 14548-14553. 10.1073/pnas.250351297. DOI: 10.1073/pnas.250351297
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 14548-14553
    • Cooper, K.F.1    Mallory, M.J.2    Egeland, D.B.3    Jarnik, M.4    Strich, R.5
  • 50
    • 0028807733 scopus 로고
    • Requirement of the self-glucosylating initiator proteins Glg1p and Glg2p for glycogen accumulation in Saccharomyces cerevisiae
    • PID: 8524228
    • Cheng C, Mu J, Farkas I, Huang D, Goebl MG, Roach PJ: Requirement of the self-glucosylating initiator proteins Glg1p and Glg2p for glycogen accumulation in Saccharomyces cerevisiae. Mol Cell Biol. 1995, 15: 6632-6640. DOI: 10.1128/MCB.15.12.6632
    • (1995) Mol Cell Biol , vol.15 , pp. 6632-6640
    • Cheng, C.1    Mu, J.2    Farkas, I.3    Huang, D.4    Goebl, M.G.5    Roach, P.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.