Conservation and diversity of gene families explored using the CODEHOP strategy in higher plants

BMC Plant Biology

Volumn 2, Issue , 2002, Pages

  Morant, Marc ^a   Hehn, Alain ^a   Werck Reichhart, Danièle ^a  

^a INST DE BIOL MOLEC DES PLANTES   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BRYOPHYTA; EMBRYOPHYTA; TRACHEOPHYTA; TRITICUM AESTIVUM;

CODON; CYTOCHROME P-450 CYP98A1 (SORGHUM BICOLOR); CYTOCHROME P450; GLUCOSYLTRANSFERASE; PRIMER DNA;

AMINO ACID SEQUENCE; BIOLOGY; CODON; ENZYMOLOGY; GENE LIBRARY; GENETIC VARIABILITY; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT; PLANT GENE; POLYMERASE CHAIN REACTION; PROCEDURES; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SORGHUM; WHEAT;

AMINO ACID SEQUENCE; BASE SEQUENCE; CODON; COMPUTATIONAL BIOLOGY; CYTOCHROME P-450 ENZYME SYSTEM; DNA PRIMERS; EVOLUTION, MOLECULAR; GENE LIBRARY; GENES, PLANT; GENETIC VARIATION; GLUCOSYLTRANSFERASES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; PLANTS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SORGHUM; TRITICUM;

EID: 0038745725     PISSN: 14712229     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-2-7     Document Type: Article

References (40)

1. Werck-Reichhart D, Hehn A, Didierjean L: Cytochromes P450 for engineering herbicide tolerance. Trends Plant Sci 2000, 5:116-123
2. Cole D, Edwards R: Secondary metabolism of agrochemicals in plants. In Metabolism of Agrochemicals in Plants (Edited by: Roberts T) Wiley 2000, 107-154
3. Chaudry Q, Schröder PP, Werck-Reichhart D, Grajek W, Marecik R: Prospects and limitations of phytoremediation for the removal of persistent pesticides in the environment. Environ Sci Pollut Res 2002, 9:4-17
4. Coon MJ, Vaz AD, Bestervelt LL: Cytochrome P450 2: peroxidative reactions of diversozymes. FASEB J 1996, 10:428-434
5. Mansuy D: The great diversity of reactions catalyzed by cytochromes P450. Comp Biochem Physiol C Pharmacol Toxicol Endocrinol 1998, 121:5-14
6. Kahn R, Durst F: Function and evolution of plant cytochrome P450. Recent Adv Phytochem 2000, 34:151-189
7. Werck-Reichhart D, Bak S, Paquette S: Cytochromes P450. In: The Arabidopsis Book (Edited by: Somerville CR, Meyerowitz EM) American Society of Plant Biologists, Rockville, MD 2002 [http://www.aspb.org/publications/ arabidopsis/]doi/10.1199/tab.0028
8. Vogt T, Jones P: Glycosyltransferases in plant natural product synthesis: characterization of a supergene family. Trends Plant Sci 2000, 5:380-386
9. Ross J, Li Y, Lim E, Bowles DJ: Higher plant glycosyltransferases. Genome Biol 2001, 2:REVIEWS3004
10. Meijer AH, Souer E, Verpoorte R, Hoge JH: Isolation of cytochrome P-450 cDNA clones from the higher plant Catharanthus roseus by a PCR strategy. Plant Mol Biol 1993, 22:379-83
11. Holton TA, Brugliera F, Lester DR, Tanaka Y, Hyland CD, Menting JG, CY Lu, Farcy E, Stevenson TW, Cornish EC: Cloning and expression of cytochrome P450 genes controlling flower colour. Nature 1993, 366:276-279
12. Toguri T, Tokugawa K: Cloning of eggplant hypocotyl cDNAs encoding cytochromes P450 belonging to a novel family (CYP77). FEBS Lett 1994, 338:290-294
13. Urvardi MK, Metzger JD, Krishnapillai V, Peacock WJ, Dennis E: Cloning and sequencing of a full-length cDNA from Thlaspi arvense L. that encodes a cytochrome P450. Plant Physiol 1994, 105:755-756
14. Frank MR, Deneyneka JM, Schuler MA: Cloning of wound-induced cytochrome P450 monooxygenases expressed in pea. Plant Physiol 1996, 110:1035-1046
15. Akashi T, Aoki T, Takahashi T, Kameya N, Nakamura I, Ayabe S-I: Cloning of cytochrome P450 cDNAs from cultured Glycyrrhiza echinata L. cells and their transcriptional activation by elicitor treatment. Plant Sci 1997, 126:39-47
16. Mizutani M, Ward E, Ohta D: Cytochrome P450 superfamily in Arabidopsis thaliana: isolation of cDNAs, differential expression, and RFLP mapping of multiple cytochromes P450. Plant Mol Biol 1998, 37:39-52
17. Bak S, Kahn RA, Nielsen HL, Møller BL, Halkier BA: Cloning of three A-type cytochromes P450, CYP71E1, CYP98, and CYP99 from Sorghum bicolor (L.) Moench by a PCR approach and identification by expression in Escherichia coli of CYP71E1 as a multifunctional cytochrome P450 in the biosynthesis of the cyanogenic glucoside dhurrin. Plant Mol Biol 1998, 36:393-405
18. Ralston L, Kwon ST, Schoenbeck M, Ralston J, Schenk DJ, Coates RM, Chappell J: Cloning, heterologous expression, and functional characterization of 5-epi-aristolochene-1,3-dihydroxylase from tobacco (Nicotiana tabacum). Arch Biochem Biophys 2001, 393:222-235
19. Schopfer CR, Ebel J: Identification of elicitor-induced cytochromes P450 of soybean (Glycine max L.) using differential display of mRNA. Mol Gen Genet 1998, 258:315-322
20. Schoendorf A, Rithner C, Williams RM, Croteau RB: Molecular cloning of a cytochrome P450 taxane 10β-hydroxylase cDNA from Taxus and functional expression in yeast. Proc Natl Acad Sci USA 2001, 98:1501-1506
21. Fischer TC, Klattig JT, Gierl A: A general cloning strategy for divergent plant cytochrome P450 genes and its application in Lolium rigidum and Ocimum basilicum. Theor Appl Genet 2001, 103:1014-1021
22. Rose TM, Schultz ER, Henikoff JG, Pietrovski S, McCallum C, Henikoff S: Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Res 1998, 26:1628-1635
23. Schoch G, Goepfert S, Morant M, Hehn A, Meyer D, Ullmann P, Werck-Reichhart D: CYP98A3 from Arabidopsis thaliana is a 3′-hydroxylase of phenolic esters, a missing link in the phenylpropanoid pathway. J Biol Chem 2001, 276:36566-36574
24. Franke R, Humphreys JM, Hemm MR, Denault JW, Ruegger MO, Cusumano JC, Chapple C: The Arabidopsis REF8 gene encodes the 3-hydroxylase of phenylpropanoid metabolism. Plant J 2002, 30:33-45
25. Franke R, Hemm MR, Denault JW, Ruegger MO, Humphreys JM, Chapple C: Changes in secondary metabolism and deposition of an unusual lignin in the ref8 mutant of Arabidopsis. Plant J 2002, 30:47-59
26. Baucher M, Monties B, Van Montaigu M, Boerjean W: Biosynthesis and genetic engineering of lignin. Crit Rev Plant Sci 1998, 17:125-197
27. Boudet AM: Lignins and lignification: selected issues. Plant Physiol Biochem 2000, 38:1-16
28. Siminsky B, Corbin FT, Ward ER, Fleischmann TJ, Dewey RE: Expression of a soybean cytochrome P450 monooxygenase cDNA in yeast and tobacco enhances the metabolism of phenylurea herbicides. Proc Natl Acad Sci USA 1999, 96:1750-1755
29. Cooper-Driver GA, Bhattacharya M: Role of phenolics in plant evolution. Phytochemistry 1998, 49:1165-1174
30. Jones PR, Møller BL, Høj PB: The UDP-glucose:p- hydroxymandelonitrile-O-glucosyltransferase that catalyzes the last step in synthesis of the cyanogenic glucoside dhurrin in Sorghum bicolor. Isolation, cloning, heterologous expression, and substrate specificity. J Biol Chem 1999, 274:35483-35491
31. Brazier M, Cole DJ, Edwards R: O-Glucosyltransferase activities toward phenolic natural products and xenobiotics in wheat and herbicide-resistant and herbicide susceptible black-grass (Alopecurus myosuroides). Phytochemistry 2002, 59:149-156
32. Rieseberg LH: Polyploid evolution: Keeping peace at genomic reunions. Current Biology 2001, 11:R925-R928
33. 5, P450 Reductase, and Glycosyl Transferase Family 1 Database at PLACE [http:// www.biobase.dk/P450/]
34. Cabello-Hurtado F, Zimmerlin A, Rahier A, Taton M, DeRose R, Nedelkina S, Batard Y, Durst F, Pallet KE, Werck-Reichhart D: Cloning and functional expression in yeast of a cDNA coding for an obtusifoliol 14α-demethylase (CYP51) in wheat. Biochem Biophys Res Commun 1997, 230:381-385
35. Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680
36. Blocks WWW Server [http://blocks.fhcrc.org/blocks/]
37. CODEHOP: COnsensus-DEgenerate Hybrid Oligonucleotide Primers [http://blocks.fhcrc.org/codehop.html]
38. David Nelson's Cytochrome P450 Homepage [http://drnelson. utmem.edu/CytochromeP450.html]
39. Genedoc: a tool for editing and annoting multiple sequence alignments [www.psc.edu/biomed/genedoc]
40. Hall TA: BioEdit: an user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999, 41:95-98