Cytochrome p450 superfamily in Arabidopsis thaliana: Isolation of cDNAs, differential expression, and RFLP mapping of multiple cytochromes P450

Plant Molecular Biology

Volumn 37, Issue 1, 1998, Pages 39-52

  Mizutani, Masaharu ^a   Ward, Eric ^b   Ohta, Daisaku ^c  

^a CIBA GEIGY LTD   (Switzerland)

^b NOVARTIS PHARMA AG   (Switzerland)

^c Research Institute for Biological Science OKAYAMA   (Japan)

Author keywords

Arabidopsis; Circadian rhythm; Cytochrome P450; RFLP mapping; Wounding

Indexed keywords

AMINO ACID SEQUENCE; ARABIDOPSIS; CYTOCHROME P450; POLYMERASE CHAIN REACTION; PROTEIN STRUCTURE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

AMINO ACID SEQUENCE; ARABIDOPSIS; CHROMOSOME MAPPING; CLONING, MOLECULAR; CYTOCHROME P-450 ENZYME SYSTEM; DNA, COMPLEMENTARY; GENE EXPRESSION; GENES, PLANT; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, PLANT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0032080559     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1005921406884     Document Type: Article

References (52)

1. Ausubel FM, Brent R, Kingston RE, Moore DD, Siedman JG, Smith JA, Struhl K: Current Protocols in Molecular Biology. John Wiley, New York (1987).
2. Beltzer JP, Fiedler K, Fuhrer C, Geffen I, Handschin C, Wessels HP, Spiess M: Charged residues are major determinants of the transmembrane orientation of a signal-anchor sequence. J Biol Chem 266: 973-978 (1991).
3. Bishop GJ, Harrison K, Jones JDG: The tomato Dwarf gene isolated by heterologous transposon tagging encodes the first member of a new cytochrome P450 family. Plant Cell 8: 959-969 (1996).
4. Bolwell GP, Bozak K, Zimmerlin A: Plant cytochrome P450. Phytochemistry 37: 1491-1506 (1994).
5. Bozak KR, Yu H, Sirevag R, Chistoffersen RE: Sequence analysis of ripe-related cytochrome P450 cDNAs from avocado fruits. Proc Natl Acad Sci USA 87: 3904-3908 (1990).
6. Chang C, Bowman JL, DeJohn AW, Lander ES, Meyerowitz EM: Restriction fragment length polymorphism linkage map for Ambidopsis thaliana. Proc Natl Acad Sci USA 85: 6856-6860 (1988).
7. Chapple CCS: A cDNA encoding a novel cytochrome P450-dependent monooxygenase from Arabidopsis thaliana. Plant Physiol 108: 875-876 (1995).
8. Chiang H-H, Hwang I, Goodman HM: Isolation of the Arabidopsis GA4 locus. Plant Cell 7: 195-201 (1995).
9. Church GM, Gilbert W: Genomic sequencing. Proc Natl Acad Sci USA 81: 1991-1995 (1984).
10. Donaldson RP, Luster DG: Multiple forms of plant cytochromes P450. Plant Physiol 96: 669-674 (1991).
11. Fahrendorf T, Dixon RA: Stress responses in alfalfa (Medicago sativa L.) XVIII: Molecular cloning and expression of the elicitor-inducible cinnamic acid 4-hydroxylase cytochrome P450. Arch Biochem Biophys 305: 509-515 (1993).
12. Feinberg AP, Vogelstein B: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6-13 (1983).
13. Frank MR, Deyneka JM, Schuler MA: Cloning of wound-inducible cytochrome P450 monooxygenases expressed in pea. Plant Physiol 110: 1035-1046 (1996).
14. Frey M, Kliem R, Saedler H, Gierl A: Expression of a cytochrome P450 gene family in maize. Mol Gen Genet 246: 100-109 (1995).
15. Gotoh O, Fujii-Kuriyama Y: Evolution, structure, and gene regulation of cytochrome P450. In: Ruckpaul K, Rein H (eds) Basis and Mechanisms of Regulation of Cytochrome P450, vol. 1, pp. 195-243. Taylor and Francis, London/New York/Philadelphia (1989).
16. Graebe JE: Gibberellin biosynthesis and control. Annu Rev Plant Physiol 38: 419-465 (1987).
17. Hauge BM, Hanley SM, Cartinhour S, Cherrt JM, Goodman HM, Koornneef M, Stam P, Chang C, Kempin S, Medrano L, Meyerowitz EM: An integrated genetic/RFLP map of the Arabidopsis thaliana genome. Plant J 3: 745-754 (1993).
18. Hatzios KK: Biotransformations of herbicides in higher plants. In: Grover R, Cessna AJ (eds) Environmental Chemistry of Herbicides, vol. 2, pp. 141-185. CRC Press, Boca Raton, FL (1991).
19. Holton TA, Brugliera F, Lester DR, Tanaka Y, Hyland CD, Menting JGT, Lu CY, Farcy E, Stevenson TW, Cornish EC: Cloning and expression of cytochrome P450 genes controlling flower color. Nature 366: 276-279 (1993).
20. Hotze M, Schroder G, Schroder J: Cinnamate 4-hydroxylase from Catharanthus roseus, and a strategy for the functional expression of plant cytochrome P450 proteins as translational fusions with P450 reductase in Escherichia coli. FEBS Lett 374: 345-350 (1995).
21. Johnson EF: Mapping determinants of the substrate selectivities of P450 enzymes by site-directed mutagenesis. Trends Phamacol Sci 131: 122-126 (1992).
22. Koch BM, Sibbesen O, Halkier BA, Svendsen I, Moller BL: The primary sequence of cytochrome P450tyr, the multifunctional N-hydroxylase catalyzing the conversion of L-tyrosine to p-hydroxyphenylacetalehyde oxime in the biosynthesis of cyanogenic glucoside dhurrin in Sorghum bicolor (L.) Moench. Arch Biochem Biophys 323: 177-186 (1995).
23. Kraus PFX, Kutchan TM: Molecular cloning and heterologous expression of a cDNA encoding berbamunine synthase, a C-O phenol-coupling cytochrome P450 from the higher plant Berberis stolonifera. Proc Natl Acad Sci USA 92: 2071-2075 (1995).
24. Lagrimini LM, Burkhart W, Moyer M, Rothstein S: Molecular cloning of complementary DNA encoding the lignin-forming peroxidase from tobacco: molecular analysis and tissue-specific expression. Proc Natl Acad Sci USA 84: 7542-7546 (1987).
25. Lander LRR, Green MP, Abrahamson J, Barlow A, Dale M, Lincoln SE, Newsburg L: MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181 (1987).
26. Lindberg RL, Negishi M: Alteration of mouse cytochrome P450coh substrate specificity by mutation of a single amino-acid residue. Nature 339: 632-634 (1989).
27. Logemann E, Parniske M, Hahlbrock K: Modes of expression and common structural features of the complete phenylalanine ammonia-lyase gene family in parsley. Proc Natl Acad Sci USA 92: 5905-5909 (1995).
28. Meijer AH, Souer E, Verpoorte R, Hoge JHC: Isolation of cytochrome P450 cDNA clones from the higher plant Catharanthus roseus by a PCR strategy. Plant Mol Biol 22: 379-383 (1993).
29. Meyer K, Cusumano JC, Somerville C, Chapple CCS: Ferulate 5-hydroxylase from Arabidopsis thaliana defines a new family of cytochrome P450-dependent monooxygenases. Proc Natl Acad Sci USA 93: 6869-6874 (1996).
30. Mizutani M, Ward E, DiMaio J, Ohta D, Ryals J, Sato R: Molecular cloning and sequencing of a cDNA encoding mung bean cytochrome P450(P450C4H) possessing cinnamate 4-hydroxylase activity. Biochem Biophys Res Comm 190: 875-880 (1993).
31. Mizutani M, Ohta D, Sato R: Isolation of a cDNA and a genomic clone encoding cinnamate 4-hydroxylase from Arabidopsis thaliana and its expression manner in planta. Plant Physiol 113: 755-763 (1997).
32. Nairn CJ, Winsett L, Ferl RJ: Nucleotide sequence of an actin gene from Arabidopsis thaliana. Gene 65: 247-257 (1988).
33. Nelson DR, Kamataki T, Waxman DJ, Guengerich FP, Estabrook RW, Feyereisen R, Gonzalez FJ, Coon MJ, Gunsalus IC, Gotoh O, Okuda K, Nebert DW: The P450 superfamily: update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature. DNA Cell Biol 12: 1-51 (1993).
34. Nelson DR, Koymans L, Kamataki T, Stegeman JJ, Feyereisen R, Waxman DJ, Waterman MR, Gotoh O, Coon MJ, Estabrook RW, Gunsalus IC, Nebert DW: P450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature. Pharmacogenetics 6: 1-42 (1996).
35. Nelson DR, Strobel HW: On the membrane topology of vertebrate cytochrome P450 proteins. J Biol Chem 263: 6038-6050 (1988).
36. Newman T, de Bruijn FJ, Green P, Keegstra K, Kende H, Mclntosh L, Ohlrogge J, Raikhel N, Somerville S, Thomashow M, Retzel E, Somerville C: Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol 106: 1241-1255 (1994).
37. Pan Z, Durst F, Werck-Reichhart DW, Gardner HW, Camara B, Cournish K, Backhaus RA: The major protein of guayule rubber particles is a cytochrome P450. J Biol Chem 270: 8487-8494 (1995).
38. Potter S, Moreland DE, Kreuz K, Ward E: Induction of cytochrome P450 genes by ethanol in maize. Drug Metab Drug Interact 12: 317 (1995).
39. Riviere JL, Cabbane F: Animal and plant cytochrome P450 systems. Biochemie 69: 743-752 (1987).
40. Sandermann H: Xenobiotics. Trends Biochem Sci 17: 82-84 (1992).
41. Song WC, Funk CD, Brash AR: Molecular cloning of an allene oxide synthase: a cytochrome P450 specialized for the metabolism of fatty acid hydroperoxides. Proc Natl Acad Sci USA 90: 8519-8523 (1993).
42. Szczena-Skorupa E, Browne N, Mead D, Kemper B: Positive charges at the NH2 terminus convert the membrane-anchor signal peptide of cytochrome P450 to a secretory signal peptide. Proc Natl Acad Sci USA 85: 738-742 (1988).
43. Szczesna-Skorupa E, Straub P, Kemper B: Deletion of a conserved tetrapeptide, PPGP, in P4502C2 results in loss of enzymatic activity without a change in its cellular location. Arch Biochem Biophys 304: 170-175 (1993).
44. Szekeres M, Nemeth K, Koncz-Kalman Z, Mathur J, Kauschmann A, Altmann T, Redei GP, Nagy F, Schell J, Koncz C: Brassinosteroids rescue the deficiency of CYP90, a cytochrome P450, controlling cell elongation and de-etiolation in Arabidopsis. Cell 85: 171-182 (1996).
45. Teutsch HG, Hasenfratz MP, Lesot A, Stoltz C, Garnier JM, Jeltsch JM, Durst F, Werck-Reichhart D: Isolation and sequence of a cDNA encoding the Jerusalem artichoke cinnamate 4-hydroxylase, a major plant cytochrome P450 involved in the general phenylpropanoid pathway. Proc Natl Acad Sci USA 90: 4102-4106 (1993).
46. Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680 (1994).
47. Toguri T, Kobayashi O, Umemoto N: The cloning of eggplant seedling cDNAs encoding proteins from a novel cytochrome P450 family (CYP76). Biochim Biophys Acta 1216: 165-169 (1993).
48. Umemoto N, Kobayashi O, Ishizaki-Nishizawa O, Toguri T: cDNAs sequences encoding cytochrome P450 (CYP71 family) from eggplant seedlings. FEBS 330: 169-173 (1993).
49. Valvekens D, Van Montagu MV, Lysebettens MV: Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci USA 85: 5536-5540 (1988).
50. Winkler RG, Helentjaris T: The maize Dwarf3 gene encodes a cytochrome P450-mediated early step in gibberellin biosynthesis. Plant Cell 7: 1307-1317 (1995).
51. Yamazaki S, Sato K, Suhara K, Sakaguchi M, Mihara K, Omura T: Importance of the proline-rich region following signal-anchor sequence in the formation of correct conformation of microsomal cytochrome P450s. J Biochem 114: 652-657 (1993).
52. Zeevaart JAD, Talon M: Gibberellin mutants in Arabidopsis thaliana. In: Karssen CM et al. (eds) Plant Growth Regulation. Kluwer Academic Publishers, Dordrecht, Netherlands (1991).