MASE1 and MASE2: Two novel integral membrane sensory domains

Journal of Molecular Microbiology and Biotechnology

Volumn 5, Issue 1, 2003, Pages 11-16

  Nikolskaya, Anastasia N ^a   Mulkidjanian, Armen Y ^b   Beech, Iwona B ^c   Galperin, Michael Y ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

^b UNIVERSITY OF OSNABRÜCK   (Germany)

^c UNIVERSITY OF PORTSMOUTH   (United Kingdom)

Author keywords

Adenylate cyclase; Escherichia coli; Genome analysis; Histidine kinase; Membrane topology; Signal transduction

Indexed keywords

ADENYLATE CYCLASE; BACTERIAL PROTEIN; PROTEIN HISTIDINE KINASE; PROTEIN KINASE; PROTEIN-HISTIDINE KINASE;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GENOME; DESULFOVIBRIO VULGARIS; GENE SEQUENCE; GENOME ANALYSIS; NUCLEOTIDE SEQUENCE; PROTEIN DOMAIN; PROTEIN FUNCTION; SIGNAL TRANSDUCTION; AMINO ACID SEQUENCE; CHEMISTRY; DNA SEQUENCE; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; MOLECULAR GENETICS; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO; DESULFOVIBRIO VULGARIS; ESCHERICHIA COLI;

ADENYLATE CYCLASE; AMINO ACID SEQUENCE; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SIGNAL TRANSDUCTION;

EID: 0038650891     PISSN: 14641801     EISSN: None     Source Type: Journal    
DOI: 10.1159/000068720     Document Type: Article

References (31)

1. 2+-channel subunits and a class of prokaryotic chemotaxis receptors. Trends Biochem. Sci. 25:535-537.
2. Anantharaman, V. and Aravind, L. 2001. The CHASE domain: a predicted ligand-binding module in plant cytokinin receptors and other eukaryotic and bacterial receptors. Trends Biochem. Sci. 26:579-582.
3. Aravind, L. and Ponting, C.P. 1997. The GAF domain: an evolutionary link between diverse phototransducing proteins. Trends Biochem. Sci. 22:458-459.
4. Ausmees, N., Mayer, R., Weinhouse, H., Volman, G., Amikam, D., Benziman, M., and Lindberg, M. 2001. Genetic data indicate that proteins containing the GGDEF domain possess diguanylate cyclase activity. FEMS Microbiol. Lett. 204:163-167.
5. Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S.R., Griffiths-Jones, S., Howe, K.L., Marshall, M., and Sonnhammer, E.L. 2002. The Pfam protein families database. Nucleic Acids Res. 30:276-280.
6. Beech, I.B. and Gaylarde, C.C. 1999. Recent advances in the study of biocorrosion - An overview. Rev. Microbiol. 30:177-190.
7. Beech, I.B., Tapper, R., and Gubner, R. 2000. Microscopy methods for studying biofilms. In Evans, L.V. (Ed.), Biofilms: Recent Advances in Their Study and Control. London: Harwood, pp. 51-70.
8. Beech, I.B. 2002. Biocorrosion: role of sulfate-reducing bacteria. In Bitton, G. (Ed.), Encyclopedia of Environmental Microbiology. New York: Wiley, pp. 465-475.
9. Claros, M.G. and von Heijne, G. 1994. TopPred II: an improved software for membrane protein structure predictions. Comput. Appl. Biosci. 10:685-686.
10. Fu, R., Wall, J.D., and Voordouw, G. 1994. DcrA, a c-type heme-containing methyl-accepting protein fromDesulfovibrio vulgaris Hildenborough, senses the oxygen concentration or redox potential of the environment. J. Bacteriol. 176:344-350.
11. Galperin, M.Y., Natale, D.A., Aravind, L., and Koonin, E.V. 1999. A specialized version of the HD hydrolase domain implicated in signal transduction. J. Mol. Microbiol. Biotechnol. 1:303-305.
12. Galperin, M.Y., Nikolskaya, A.N., and Koonin, E.V. 2001a. Novel domains of the prokaryotic two-component signal transduction system. FEMS Microbiol. Lett. 203:11-21.
13. Galperin, M.Y., Gaidenko, T.A., Mulkidjanian, A.Y., Nakano, M., and Price, C.W. 2001b. MHYT, a new integral membrane sensor domain. FEMS Microbiol. Lett. 205:17-23.
14. Hofmann, K. and Stoffel, W. 1993. TMbase - A database of membrane spanning proteins segments. Biol. Chem. Hoppe-Seyler 374:166.
15. Letunic, I., Goodstadt, L., Dickens, N.J., Doerks, T., Schultz, J., Mott, R., Ciccarelli, F., Copley, R.R., Ponting, C.P., and Bork, P. 2002. Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res. 30:242-244.
16. Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer, L.Y., and Bryant, S.H. 2002. CDD: A database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30:281-283.
17. Mougel, C. and Zhulin, I.B. 2001. CHASE: an extracellular sensing domain common to transmembrane receptors from prokaryotes, lower eukaryotes and plants. Trends Biochem. Sci. 26:582-584.
18. Nikolskaya, A.N. and Galperin, M.Y. 2002. A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family. Nucleic Acids Res. 30:2453-2459.
19. Pei, J. and Grishin, N.V. 2001. GGDEF domain is homologous to adenylyl cyclase. Proteins. 42:210-216.
20. Popot, J.L. and Engelman, D.M. 2000. Helical membrane protein folding, stability, and evolution. Annu. Rev. Biochem. 69:881-922.
21. Romling, U., Rohde, M., Olsen, A., Normark, S., and Reinkoster, J. 2000. AgfD, the checkpoint of multicellular and aggregative behaviour in Salmonella typhimurium regulates at least two independent pathways. Mol. Microbiol. 36:10-23.
22. Rost, B., Fariselli, P., and Casadio, R. 1996. Topology prediction for helical transmembrane proteins at 86% accuracy. Protein Sci. 5:1704-1718.
23. Tal, R., Wong, H.C., Calhoon, R., Gelfand, D., Fear, A.L., Volman, G., Mayer, R., Ross, P., Amikam, D., Weinhouse, H., et al. 1998. Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: Genetic organization and occurrence of conserved domains in isoenzymes. J. Bacteriol. 180:4416-4425.
24. Tatusov, R.L., Galperin, M.Y., Natale, D.A., and Koonin, E.V. 2000. The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:33-36.
25. Taylor, B.L. and Zhulin, I.B. 1999. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63:479-506.
26. Tusnady, G.E. and Simon, I. 2001. The HMMTOP transmembrane topology prediction server. Bioinformatics 17:849-850.
27. Ubarretxena-Belandia, I. and Engelman, D.M. 2001. Helical membrane proteins: Diversity of functions in the context of simple architecture. Curr. Opin. Struct. Biol. 11:370-376.
28. Xiong, J., Kurtz, D.M., Jr., Ai, J., and Sanders-Loehr, J. 2000. A hemerythrin-like domain in a bacterial chemotaxis protein. Biochemistry. 39:5117-5125.
29. Zhulin, I.B. 2001. The superfamily of chemotaxis transducers: From physiology to genomics and back. Adv. Microb. Physiol. 45:157-198.
30. Zhulin, I.B., Nikolskaya, A.N., and Galperin, M.Y. 2003. Common sensory domains in transmembrane receptors for diverse signal transduction pathways in Bacteria and Archaea. J. Bacteriol. 185:285-294.
31. Zogaj, X., Nimtz, M., Rohde, M., Bokranz, W., and Romling, U. 2001. The multicellular morpho-types of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix. Mol. Microbiol. 39:1452-1463.