Expression and genomic organization of a medaka fish novel membrane form of guanylyl cyclase/orphan receptor

Zoological Science

Volumn 20, Issue 5, 2003, Pages 591-606

  Yamagami, Sayaka ^a   Xu, Shan Hua ^a   Tsutsumi, Makiko ^b   Hori, Hiroshi ^b   Suzuki, Norio ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b NAGOYA UNIVERSITY   (Japan)

Author keywords

cGMP; Guanylyl cyclase; Natriuretic peptide; Orphan receptor; Splicing

Indexed keywords

ATRIAL NATRIURETIC FACTOR RECEPTOR; COMPLEMENTARY DNA; GUANYLATE CYCLASE; MEMBRANE PROTEIN; PRIMER DNA;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CELL STRAIN COS1; CHEMISTRY; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; ORYZIAS; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SOUTHERN BLOTTING;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; CLONING, MOLECULAR; COS CELLS; DNA PRIMERS; DNA, COMPLEMENTARY; GENE EXPRESSION PROFILING; GUANYLATE CYCLASE; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; ORYZIAS; PHYLOGENY; RECEPTORS, ATRIAL NATRIURETIC FACTOR; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT;

ANIMALIA; CYPRINODONTIFORMES; LATIPES; ORYZIAS LATIPES; VERTEBRATA;

EID: 0038605148     PISSN: 02890003     EISSN: None     Source Type: Journal    
DOI: 10.2108/zsj.20.591     Document Type: Article

References (67)

1. Anand-Srivastava MB, Sairam MR, Cantin M (1990) Ring-deleted analogs of atrial natriuretic factor inhibit adenylate cyclase/cAMP system. Possible coupling of clearance atrial natriuretic factor receptors to adenylate cyclase/cAMP signal transduction system. J Biol Chem 265: 8566-8572
2. Bloch KD, Seidman JG, Naftilan JD, Fallon JT, Seidman CE (1986) Neonatal atria and ventricles secrete atrial natriuretic factor via tissue-specific secretory pathways. Cell 47: 695-702
3. Chang M-S, Lowe DG, Lewis M, Hellmiss R, Chen E, Goeddel DV (1989) Differential activation by atrial and brain natriuretic peptides of two different receptor guanylate cyclases. Nature 341: 68-72
4. Chinkers M, Garbers DL (1989) The protein kinase domain of the ANP receptor is required for signaling. Science 245: 1392-1394
5. Chinkers M, Garbers DL, Chang M-S, Lowe DG, Chin H, Goeddel DV, Schulz S (1989) A membrane form of guanylate cyclase is an atrial natriuretic peptide receptor. Nature 338: 78-83
6. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analyt Biochem 162: 156-159
7. Comrie MM, Cutler CP, Cramb G (2001) Cloning and expression of two isoforms of guanylate cyclase C (GC-C) from the European eel (Anguilla anguilla). Comp Biochem Physiol B129: 575-586
8. Dizhoor AM, Lowe DG, Olshevskaya EV, Laura RP, Hurley JB (1994) The human photoreceptor membrane guanylyl cyclase, RetGC, is present in outer segments and is regulated by calcium and a soluble activator. Neuron 12: 1345-1352
9. Drewett JG, Garbers DL (1994) The family of guanylyl cyclase receptors and their ligands. Endocrine Rev 15: 135-162
10. Engel AM, Lowe DG (1995) Characterization of the hormone binding site of natriuretic peptide receptor-C. FEBS Lett 360: 169-172
11. Felsenstein J (1989) PHYLIP-phylogeny interference package (version 3.2). Cladistics 5: 164-166
12. Fen Z, Daniel TO (1991) 5′ Untranslated sequences determine degradative pathway for alternate PDGF B/cis-mRNA's. Oncogene 6: 953-959
13. Forssmann WG, Richter R, Meyer M (1998) The endocrine heart and natriuretic peptides: histochemistry, cell biology, and functional aspects of the renal urodilatin system. Histochem. Cell Biol 110: 335-357
14. Frohman MA, Dush MK, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85: 8998-9002
15. Fülle H-J, Vassar R, Foster DC, Yang R-B, Axel R, Garbers DL (1995) A receptor guanylyl cyclase expressed specifically in olfactory sensory neurons. Proc Natl Acad Sci USA 92: 3571-3575
16. Füller F, Porter JG, Arfsten AE, Miller J, Schilling JW, Scarborough RM, Lewicki JA, Schenk DB (1988) Atrial natriuretic peptide clearance receptor. Complete sequence and functional expression of cDNA clones. J Biol Chem 263: 9395-9401
17. Garbers DL, Lowe DG (1994) Guanylyl cyclase receptors. J Biol Chem 269: 30741-30744
18. Griffin E, Re A, Hamel N, Fu C, Bush H, McCaffrey T, Asch AS (2001) A link between diabetes and atherosclerosis: Glucose regulates expression of CD36 at the level of translation. Nat Med 7: 840-846
19. Heinemeyer T, Wingender E, Reuter I, Hermjakob H, Kel AE, Kel OV, Ignatieva EV, Ananko EA, Podkolodnaya OA, Kolpakov FA, Podkolodny NL, Kolchanov NA (1998) Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res 26: 362-367
20. Hisatomi O, Honkawa H, Imanishi Y, Satoh T, Tokunaga F (1999) Three kinds of guanylate cyclase expressed in medaka photoreceptor cells in both retina and pineal organ. Biochem Biophys Res Co 255: 216-220
21. Itakura M, Iwashina M, Mizuno T, Ito T, Hagiwara H, Hirose S (1994) Mutational analysis of disulfide bridges in the type C atrial natriuretic peptide receptor. J Biol Chem 269: 8314-8318
22. 146 residues and the disulfide-linked loops in atrial natriuretic peptide receptors are critical for the ligand-binding activity. J Biochem 115: 563-567
23. Kimura M (1983) The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge
24. Koesling D, Herz J, Gausepohl H, Niroomand F, Hinsch KD, Mulsch A, Böhme E, Schultz G, Frank R (1988) The primary structure of the 70 kDa subunit of bovine soluble guanylate cyclase. FEBS Lett 239: 29-34
25. Koesling D, Harteneck C, Humbert P, Bosserhoff A, Frank R, Shultz G, Böhme E (1990) The primary structure of the larger subunit of soluble guanylyl cyclase from bovine lung. Homology between the two subunits of the enzyme. FEBS Lett 266: 128-132
26. Koller KJ, Lowe DG, Bennett GL, Minamino N, Kangawa K, Matsuo H Goeddel DV (1991). Selective activation of the B natriuretic peptide receptor by C-type natriuretic peptide (CNP). Science 252: 120-123
27. Kozak M (1983) Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles. Microbiol Rev 47: 1-45
28. Krupinski J, Coussen F, Bakalyar HA, Tang W J, Feinstein PG, Orth K, Slaughter C, Reed RR, Gilman AG (1989) Adenylyl cyclase amino acid sequence: possible channel- or transporter-like structure. Science 244: 1558-1564
29. Kusakabe R, Kusakabe T, Suzuki N (1999) In vivo analysis of two striated muscle actin promoters reveals combinations of multiple regulatory modules required for skelet al and cardiac muscle-specific gene expression. Int J Dev Biol 43: 541-554
30. Kusakabe T, Suzuki N (2000) The guanylyl cyclase family in medaka fish Oryzias latipes. Zool Sci 17: 131-140
31. Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132
32. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 257: 680-685
33. Laura RP, Dizhoor A M, Hurley JB (1996) The membrane guanylyl cyclase, retinal guanylyl cyclase-1, is activated through its intracellular domain. J Biol Chem 271: 11646-11651
34. Lowe DG, Chang M-S, Hellmiss R, Chen E, Singh S, Garbers DL, Goeddel DV (1989) Human atrial natriuretic peptide receptor defines a new paradigm for second messenger signal transduction. EMBO J 8: 1377-1384
35. Lowe DG, Dizhoor AM, Liu K, Gu Q, Spencer M, Laura R, Lu L, Hurley JB (1995) Cloning and expression of a second photoreceptor-specific membrane retina guanylyl cyclase (RetGC), RetGC-2. Proc Natl Acad Sci USA 92: 5535-5539
36. Mantoku T, Muramatsu R, Nakauchi M, Yamagami S, Kusakabe T, Suzuki N (1999) Sequence analysis of cDNA and genomic DNA, and mRNA expression of the medaka fish homolog of the mammalian guanylyl cyclase C. J Biochem 125: 476-486
37. Maruyama K, Sugano S (1994) Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribo-nucleotides. Gene 138: 171-174
38. Matsuda M, Kawato N, Asakawa S, Shimizu N, Nagahama Y, Hamaguchi S, Sakaizumi M, Hori H (2001) Construction of a BAG library derived from the inbred Hd-rR strain of the teleost fish, Oryzias latipes. Genes Genet Syst 76: 61-63
39. Meyer A, Schartl M (1999) Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr Opin Cell Biol 11: 699-704
40. Mount SM (1982) A catalogue of splice junction sequences. Nucleic Acids Res 10: 459-472
41. Nakane M, Saheki S, Kuno T, Ishii K, Murad F (1988) Molecular cloning of a cDNA coding for 70 kilodalton subunit of soluble guanylate cyclase from rat lung. Biochem Biophys Res Co 157: 1139-1147
42. Naruse K, Fukamachi S, Mitani, H, Kondo M, Matsuoka T, Kondo S, Hanamura N, Morita Y, Hasegawa K, Nishigaki R, Shimada A, Wada H, Kusakabe T, Suzuki N, Kinoshita M, Kanamori A, Terado T, Kimura H, Nonaka M, Shima A (2000) A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154: 1773-1784
43. Potter LR, Garbers DL (1992) Dephosphorylation of the guanylyl cyclase-A receptor causes desensitization. J Biol Chem 267: 14531-14534
44. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
45. Sanger R, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467
46. Schacterle GR, Pollack RL (1973) A simplified method for the quantitative assay of small amount of protein in biologic material. Analyt Biochem 51: 654-655
47. Schmidt EE, Schiblar U (1995) Cell size regulation, a mechanism that controls cellular RNA accumulation: Consequences on regulation of the ubiquitous transcription factors Oct1 and NF-Y, and the liver-enriched transcription factor DBP. J Cell Biol 128: 467-483
48. Schulz S, Singh S, Bellet RA, Singh G, Tubb DJ, Chin H, Garbers DL (1989) The primary structure of a plasma membrane guanylate cyclase demonstrates diversity within this new receptor family. Cell 58: 1155-1162
49. Schulz S, Wedel BJ, Matthews A, Garbers DL (1998) The cloning and expression of a new guanylyl cyclase orphan receptor. J Biol Chem 273: 1032-1037
50. Seimiya M, Kusakabe T, Suzuki N (1997) Primary structure and differential gene expression of three membrane forms of guanylyl cyclase found in the eye of the teleost Oryzias latipes. J Biol Chem 272: 23407-23417
51. Sharma RK (2002) Evolution of the membrane guanylate cyclase transduction system. Mol Cell Biochem 230: 3-30
52. Shimizu T, Takeda K, Furuya H, Hoshino K, Nomura K, Suzuki N (1996) A mRNA for membrane form of guanylyl cyclase is expressed exclusively in the testis of the sea urchin Hemicentrotus pulcherrimus. Zool Sci 13: 285-294
53. Shyjan AW, de Sauvage FJ, Gillett NA, Goeddel DV, Lowe DG (1992) Molecular cloning of a retina-specific membrane guanylyl cyclase. Neuron 9: 727-737
54. Stults JT, O'Connell KL, Garcia C, Wong S, Engel AM, Garbers DL, Lowe DG (1994) The disulfide linkages and glycosylation sites of the human natriuretic peptide receptor-C homodimer. Biochemistry 33: 11372-11381
55. Sudoh T, Minamino N, Kangawa K, Matsuo H (1990) C-type natriuretic peptide (CNP): a new member of natriuretic peptide family identified in porcine brain. Biochem Biophys Res Co 168: 863-870
56. Suzuki K, Satoh Y, Kusakabe T, Suzuki N (1999) Molecular phylogenetic analysis of diverse forms of echinoderm guanylyl cyclases. Zool Sci 16: 515-527
57. Takeda K, Suzuki N (1999) Genomic structure and expression of the medaka fish homolog of the mammalian guanylyl cyclase B. J Biochem 126: 104-114
58. Takei Y, Hirose S (2002) The natriuretic peptide system in eels: a key endocrine system for euryhalinity? Am J Physiol-Reg I 282: R940-R951
59. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
60. Towbin H, Staehelin T, Gordon J (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: Procedure and some applications. Proc Natl Acad Sci USA 76: 4350-4354
61. Wedel BJ, Garbers DL (2001) The guanylyl cyclase family at Y2K. Annu Rev Physiol 63: 215-233
62. Wedel BJ, Foster DC, Miller DE, Garbers DL (1997) A mutation of the atrial natriuretic peptide (guanylyl cyclase-A) receptor results in a constitutively hyperactive enzyme. Proc Natl Acad Sci USA 94: 459-462
63. Wittbrodt J, Shima A, Schartl M (2002) Medaka - a model organism from the far East. Nat Rev Genet 3: 53-64
64. Yamagami S, Suzuki K, Suzuki N (2001) Expression and exon/intron organization of two medaka fish homologs of the mammalian guanylyl cyclase A. J Biochem 130: 39-50
65. Yang R-B, Foster DC, Garbers DL, Fülle H-J (1995) Two membrane forms of guanylyl cyclase found in the eye. Proc Natl Acad Sci USA 92: 602-606
66. Venkatesh B, Gilligan P, Brenner S (2000) Fugu: a compact vertebrate reference genome. FEBS Lett 476: 3-7
67. von Heijne G (1983) Patterns of amino acids near signal-sequence cleavage sites. Eur J Biochem 133: 17-21