-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0033046425
-
Novel predicted RNA-binding domains associated with the translation machinery
-
Aravind, L., and E. V. Koonin. 1999. Novel predicted RNA-binding domains associated with the translation machinery. J. Mol. Evol. 48:291-302.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 291-302
-
-
Aravind, L.1
Koonin, E.V.2
-
3
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
-
Bartels, C., T.-H. Xia, M. Billeter, P. Güntert, and K. Wüthrich. 1995, The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 5:1-10.
-
(1995)
J. Biomol. NMR
, vol.5
, pp. 1-10
-
-
Bartels, C.1
Xia, T.-H.2
Billeter, M.3
Güntert, P.4
Wüthrich, K.5
-
4
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., P. D. Adams, G. M. Clore, W. L. DeLano, P. Gros, R. W. Grosse-Kunstleve, J.-S. Jiang, J. Kuszewski, M. Nilges, N. S. Pannu, R. J. Read, L. M. Rice, T. Simonson, and G. L. Warren. 1998. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54:905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
5
-
-
0034699519
-
Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
-
Carter, A. P., W. M. Clemons Jr., D. E. Brodersen, B. T. Wimberly, R. Morgan-Warren, and V. Ramakrishnan. 2000. Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 407:340-348.
-
(2000)
Nature
, vol.407
, pp. 340-348
-
-
Carter, A.P.1
Clemons W.M., Jr.2
Brodersen, D.E.3
Wimberly, B.T.4
Morgan-Warren, R.5
Ramakrishnan, V.6
-
6
-
-
0032113480
-
A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information
-
Clore, G. M., A. M. Gronenborn, and A. Bax. 1998. A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information. J. Magn. Reson. 133:216-221.
-
(1998)
J. Magn. Reson.
, vol.133
, pp. 216-221
-
-
Clore, G.M.1
Gronenborn, A.M.2
Bax, A.3
-
7
-
-
0032012610
-
Direct refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude
-
Clore, G. M., A. M. Gronenborn, and N. Tjandra. 1998. Direct refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude. J. Magn. Reson. 131:159-162.
-
(1998)
J. Magn. Reson.
, vol.131
, pp. 159-162
-
-
Clore, G.M.1
Gronenborn, A.M.2
Tjandra, N.3
-
8
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu, G., F. Delaglio, and A. Bax. 1999. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13:289-302.
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
9
-
-
0032541495
-
The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: One domain shows structural homology to the ETD DNA-binding motif
-
Davies, C., R. B. Gerstner, D. E. Draper, V. Ramakrishnan, and S. W. White. 1998. The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: one domain shows structural homology to the ETD DNA-binding motif. EMBO J. 17:4545-4558.
-
(1998)
EMBO J.
, vol.17
, pp. 4545-4558
-
-
Davies, C.1
Gerstner, R.B.2
Draper, D.E.3
Ramakrishnan, V.4
White, S.W.5
-
10
-
-
43949175202
-
Correlation of backbone amide and aliphatic side-chain resonances in C-13/N-15-enriched proteins by isotropic mixing of C-13 magnetization
-
Grzesiek, S., J. Anglister, and A. Bax. 1993. Correlation of backbone amide and aliphatic side-chain resonances in C-13/N-15-enriched proteins by isotropic mixing of C-13 magnetization. J. Magn. Reson. 101:114-119.
-
(1993)
J. Magn. Reson.
, vol.101
, pp. 114-119
-
-
Grzesiek, S.1
Anglister, J.2
Bax, A.3
-
11
-
-
9444245493
-
Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR
-
Grzesiek, S., and A. Bax. 1992. Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR. J. Am. Chem. Soc. 114:6291-6293.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 6291-6293
-
-
Grzesiek, S.1
Bax, A.2
-
12
-
-
44049117010
-
Improved 3D triple-resonance NMR techniques applied to a 31 kDa protein
-
Grzesiek, S., and A. Bax. 1992. Improved 3D triple-resonance NMR techniques applied to a 31 kDa protein. J. Magn. Reson. 96:432-440.
-
(1992)
J. Magn. Reson.
, vol.96
, pp. 432-440
-
-
Grzesiek, S.1
Bax, A.2
-
13
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L., and C. Sander. 1993. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233:123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
14
-
-
44949291986
-
Three-dimensional triple resonance NMR-spectroscopy of isotopically enriched proteins
-
Kay, L. E., M. Ikura, R. Tschudin, and A. Bax. 1990. Three-dimensional triple resonance NMR-spectroscopy of isotopically enriched proteins. J. Magn. Res. 89:496-514.
-
(1990)
J. Magn. Res.
, vol.89
, pp. 496-514
-
-
Kay, L.E.1
Ikura, M.2
Tschudin, R.3
Bax, A.4
-
15
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., M. Billeter, and K. Wüthrich. 1996. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14:51-55.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
16
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. J. 1991. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
18
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., M. W. MacArthur, D. S. Moss, and J. M. Thornton. 1993. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
19
-
-
0001436130
-
A new triple-resonance experiment for the sequential assignment of backbone resonances in proteins
-
Lohr, F., and H. Ruterjans. 1995. A new triple-resonance experiment for the sequential assignment of backbone resonances in proteins. J. Biomol. NMR 6:189-197.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 189-197
-
-
Lohr, F.1
Ruterjans, H.2
-
20
-
-
0033578802
-
Refining the overall structure and subdomain orientation of ribosomal protein S4 delta 41 with dipolar couplings measured by NMR in uniaxial liquid crystalline
-
Markus, M. A., R. B. Gerstner, D. E. Draper, and D. A. Torchia. 1999. Refining the overall structure and subdomain orientation of ribosomal protein S4 delta 41 with dipolar couplings measured by NMR in uniaxial liquid crystalline. J. Mol. Biol. 292:375-387.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 375-387
-
-
Markus, M.A.1
Gerstner, R.B.2
Draper, D.E.3
Torchia, D.A.4
-
21
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., K. A. Sharp, and B. Honig. 1991. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11:281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
22
-
-
0031566434
-
Automated NOESY interpretation with ambiguous distance restraints: The refined NMR solution structure of the pleckstrin homology domain from beta-spectrin
-
Nilges, M., M. J. Macias, S. I. O'Donoghue, and H. Oschkinat. 1997. Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin. J. Mol. Biol. 269:408-422.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 408-422
-
-
Nilges, M.1
Macias, M.J.2
O'Donoghue, S.I.3
Oschkinat, H.4
-
23
-
-
0032042263
-
Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra
-
Ottiger, M., F. Delaglio, and A. Bax. 1998. Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra. J. Magn. Reson. 131:373-378.
-
(1998)
J. Magn. Reson.
, vol.131
, pp. 373-378
-
-
Ottiger, M.1
Delaglio, F.2
Bax, A.3
-
24
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
Page, R. D. M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
25
-
-
0032864043
-
Adaptive recognition in RNA complexes with peptides and protein modules
-
Patel, D. J. 1999. Adaptive recognition in RNA complexes with peptides and protein modules. Curr. Opin. Struct. Biol. 9:74-87.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 74-87
-
-
Patel, D.J.1
-
26
-
-
0028674384
-
Investigation of protein motions via relaxation measurements
-
Peng, J. W., and G. Wagner. 1994. Investigation of protein motions via relaxation measurements. Methods Enzymol. 239:563-596.
-
(1994)
Methods Enzymol.
, vol.239
, pp. 563-596
-
-
Peng, J.W.1
Wagner, G.2
-
27
-
-
0000477505
-
Gifa V.4: A complete package for NMR data set processing
-
Pons, J. L., T. E. Malliavin, and M. A. Delsuc. 1996. Gifa V.4: a complete package for NMR data set processing. J. Biomol. NMR 8:445-452.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 445-452
-
-
Pons, J.L.1
Malliavin, T.E.2
Delsuc, M.A.3
-
28
-
-
0033617335
-
Crystal structure of E. coli threonyl-tRNA synthetase, a translational repressor enzyme with an essential catalytic zinc, complexed with its tRNA
-
Sankaranarayanan, R., A. C. Dock-Bregeon, P. Romby, J. Caillet, M. Springer, B. Rees, C. Ehresmann, B. Ehresmann, and D. Moras. 1999. Crystal structure of E. coli threonyl-tRNA synthetase, a translational repressor enzyme with an essential catalytic zinc, complexed with its tRNA. Cell 97:371-381.
-
(1999)
Cell
, vol.97
, pp. 371-381
-
-
Sankaranarayanan, R.1
Dock-Bregeon, A.C.2
Romby, P.3
Caillet, J.4
Springer, M.5
Rees, B.6
Ehresmann, C.7
Ehresmann, B.8
Moras, D.9
-
29
-
-
0035914362
-
Translational repression of the Escherichia coli α operon mRNA: Importance of an mRNA conformational switch and a ternary entrapment complex
-
Schlax, P. J., K. A. Xavier, T. C. Gluick, and D. E. Draper. 2001. Translational repression of the Escherichia coli α operon mRNA: importance of an mRNA conformational switch and a ternary entrapment complex. J. Biol. Chem. 276:38494-38501.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 38494-38501
-
-
Schlax, P.J.1
Xavier, K.A.2
Gluick, T.C.3
Draper, D.E.4
-
30
-
-
0036242421
-
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP
-
Sivaraman, J., V. Sauve, R. Larocque, E. A. Stura, J. D. Schrag, M. Cygler, and A. Matte. 2002. Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP. Nat. Struct. Biol. 9:353-358.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 353-358
-
-
Sivaraman, J.1
Sauve, V.2
Larocque, R.3
Stura, E.A.4
Schrag, J.D.5
Cygler, M.6
Matte, A.7
-
31
-
-
0034651793
-
Structure of Hsp15 reveals a novel RNA-binding motif
-
Staker, B. L., P. Korber, J. C. Bardwell, and M. A. Saper. 2000. Structure of Hsp15 reveals a novel RNA-binding motif. EMBO J. 19:749-757.
-
(2000)
EMBO J.
, vol.19
, pp. 749-757
-
-
Staker, B.L.1
Korber, P.2
Bardwell, J.C.3
Saper, M.A.4
-
32
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov, R. L., D. A. Natale, I. V. Garkavtsev, T. A. Tatusova, U. T. Shankavaram, B. S. Rao, B. Kiryutin, M. Y. Galperin, N. D. Fedorova, and E. V. Koonin. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:22-28.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
0000810926
-
RNA-protein intermolecular recognition
-
Varani, G. 1997. RNA-protein intermolecular recognition. Acc. Chem. Res. 30:189-195.
-
(1997)
Acc. Chem. Res.
, vol.30
, pp. 189-195
-
-
Varani, G.1
-
37
-
-
0029364052
-
15N chemical shift references in biomolecular NMR
-
15N chemical shift references in biomolecular NMR. J. Biomol. NMR 6:135-140.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 135-140
-
-
Wishart, D.S.1
Bigam, C.G.2
Yao, J.3
Abildgaard, F.4
Dyson, H.J.5
Oldfield, E.6
Markley, J.L.7
Sykes, B.D.8
-
38
-
-
0026597879
-
The chemical shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy
-
Wishart, D. S., B. D. Sykes, and F. M. Richards. 1992. The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 31:1647-1651.
-
(1992)
Biochemistry
, vol.31
, pp. 1647-1651
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
39
-
-
43949167657
-
HNCACB, a high sensitivity 3D NMR experiment to correlate amise-proton and nitrogen resonances with the alpha and beta carbon resonances with the alpha and beta carbon resonances in proteins
-
Wittekind, M., and L. Mueller. 1993. HNCACB, a high sensitivity 3D NMR experiment to correlate amise-proton and nitrogen resonances with the alpha and beta carbon resonances with the alpha and beta carbon resonances in proteins. J. Magn. Reson. B 101:201-205.
-
(1993)
J. Magn. Reson. B
, vol.101
, pp. 201-205
-
-
Wittekind, M.1
Mueller, L.2
-
41
-
-
0037099498
-
Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition
-
Yaremchuk, A., I. Kriklivyi, M. Tukalo, and S. Cusack. 2002. Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition. EMBO J. 21:3829-3840.
-
(2002)
EMBO J.
, vol.21
, pp. 3829-3840
-
-
Yaremchuk, A.1
Kriklivyi, I.2
Tukalo, M.3
Cusack, S.4
|