A role for cofactor-cofactor and cofactor-histone interactions in targeting p300, SWI/SNF and Mediator for transcription

EMBO Journal

Volumn 22, Issue 9, 2003, Pages 2146-2155

  Huang, Zhi Qing ^a   Li, Jiwen ^a   Sachs, Laurent M ^c   Cole, Philip A ^b   Wong, Jiemin ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

Author keywords

Chromatin remodeling; Cofactor recruitment; NRs

Indexed keywords

CELL NUCLEUS RECEPTOR; DNA; HISTONE; HISTONE ACETYLTRANSFERASE; HISTONE DEACETYLASE; MESSENGER RNA; PROTEIN P300; RNA POLYMERASE II; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; CHROMAFFIN CELL; CHROMATIN STRUCTURE; DNA SUPERCOILING; GENETIC TRANSCRIPTION; GENETIC TRANSFECTION; NONHUMAN; OOCYTE; PLASMID; PRIORITY JOURNAL; XENOPUS;

ACETYLATION; AMINO ACID SEQUENCE; ANIMALS; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; HISTONES; LIGANDS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; RECEPTORS, ANDROGEN; RECEPTORS, THYROID HORMONE; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; TUMOR CELLS, CULTURED; XENOPUS;

ANIMALIA;

EID: 0038558164     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/cdg219     Document Type: Article

References (50)

1. Aalfs, J.D., Narlikar, G.J. and Kingston, R.E. (2001) Functional differences between the human ATP-dependent nucleosome remodeling proteins BRG1 and SNF2H. J. Biol. Chem., 276, 34270-34278.
2. Agalioti, T., Chen, G. and Thanos, D. (2002) Deciphering the transcriptional histone acetylation code for a human gene. Cell, 111, 381-392.
3. Baek, H.J., Malik, S., Qin, J. and Roeder, R.G. (2002) Requirement of TRAP/mediator for both activator-independent and activator-dependent transcription in conjunction with TFIID-associated TAF(II)s. Mol. Cell. Biol., 22, 2842-2852.
4. Becker, P.B. and Horz, W. (2002) ATP-dependent nucleosome remodeling. Annu. Rev. Biochem., 71, 247-273.
5. Belandia, B., Orford, R.L., Hurst, H.C. and Parker, M.G. (2002) Targeting of SWI/SNF chromatin remodelling complexes to estrogen-responsive genes. EMBO J., 21, 4094-4103.
6. Bhattacharyya, N., Dey, A., Minucci, S., Zimmer, A., John, S., Hager, G. and Ozato, K. (1997) Retinoid-induced chromatin structure alterations in the retinoic acid receptor β2 promoter. Mol. Cell. Biol., 17, 6481-6490.
7. Chakravarti, D., LaMorte, V.J., Nelson, M.C., Nakajima, T., Schulman, I.G., Juguilon, H., Montminy, M. and Evans, R.M. (1996) Role of CBP/p300 in nuclear receptor signalling. Nature, 383, 99-103.
8. Cosma, M.P. (2002) Ordered recruitment: gene-specific mechanism of transcription activation. Mol. Cell, 10, 227-236.
9. Demarest, S.J., Martinez-Yamout, M., Chung, J., Chen, H., Xu, W., Dyson, H.J., Evans, R.M. and Wright, P.E. (2002) Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators. Nature, 415, 549-553.
10. Dilworth, F.J., Fromental-Ramain, C., Yamamoto, K. and Chambon, P. (2000) ATP-driven chromatin remodeling activity and histone acetyltransferases act sequentially during transactivation by RAR/ RXR in vitro. Mol. Cell. 6, 1049-1058.
11. DiRenzo, J., Shang, Y., Phelan, M., Sif, S., Myers, M., Kingston, R. and Brown, M. (2000) BRG-1 is recruited to estrogen-responsive promoters and cooperates with factors involved in histone acetylation. Mol. Cell. Biol., 20, 7541-7549.
12. Fondell, J.D., Ge, H. and Roeder, R.G. (1996) Ligand induction of a transcriptionally active thyroid hormone receptor coactivator complex. Proc. Natl Acad. Sci. USA, 93, 8329-8333.
13. Fryer, C.J. and Archer, T.K. (1998) Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex. Nature, 393, 88-91.
14. Goldmark, J.P., Fazzio, T.G., Estep, P.W., Church, G.M. and Tsukiyama, T. (2000) The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell, 103, 423-433.
15. Hager, G.L., Fletcher, T.M., Xiao, N., Baumann, C.T., Muller, W.G. and McNally, J.G. (2000) Dynamics of gene targeting and chromatin remodelling by nuclear receptors. Biochem. Soc. Trans., 28, 405-410.
16. Hassan, A.H., Prochasson, P., Neely, K.E., Galasinski, S.C., Chandy, M., Carrozza, M.J. and Workman, J.L. (2002) Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes. Cell, 111, 369-379.
17. Holstege, F.C., Jennings, E.G., Wyrick, J.J., Lee, T.I., Hengartner, C.J., Green, M.R., Golub, T.R., Lander, E.S. and Young, R.A. (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell, 95, 717-728.
18. Huang, Z., Li, J. and Wong, J. (2002) AR possesses an intrinsic hormone-independent transcriptional activity. Mol. Endocrinol., 16, 924-937.
19. Ichinose, H., Garnier, J.M., Chambon, P. and Losson, R. (1997) Ligand-dependent interaction between the estrogen receptor and the human homologues of SWI2/SNF2. Gene, 188, 95-100.
20. Ito, M. and Roeder, R.G. (2001) The TRAP/SMCC/Mediator complex and thyroid hormone receptor function. Trends Endocrinol. Metab., 12, 127-134.
21. Ito, M., Yuan, C.X., Okano, H.J., Darnell, R.B. and Roeder, R.G. (2000) Involvement of the TRAP220 component of the TRAP/SMCC coactivator complex in embryonic development and thyroid hormone action. Mol. Cell, 5, 683-693.
22. Jenuwein, T. and Allis, C.D. (2001) Translating the histone code. Science, 293, 1074-1080.
23. Kamei, Y. et al. (1996) A CBP integrator complex mediates transcriptional activation and AP-1 inhibition by nuclear receptors. Cell, 85, 403-414.
24. Kingston, R.E. and Narlikar, G.J. (1999) ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. Genes Dev., 13, 2339-2352.
25. Korzus, E., Torchia, J., Rose, D.W., Xu, L., Kurokawa, R., McInerney, E.M., Mullen, T.M., Glass, C.K. and Rosenfeld, M.G. (1998) Transcription factor-specific requirements for coactivators and their acetyltransferase functions. Science, 279, 703-707.
26. Kraus, W.L. and Wong, J. (2002) Nuclear receptor-dependent transcription with chromatin. Is it all about enzymes? Eur. J. Biochem., 269, 2275-2283.
27. Kraus, W.L., Manning, E.T. and Kadonaga, J.T. (1999) Biochemical analysis of distinct activation functions in p300 that enhance transcription initiation with chromatin templates. Mol. Cell. Biol., 19, 8123-8135.
28. Lau, O.D. et al. (2000) HATs off: selective synthetic inhibitors of the histone acetyltransferases p300 and PCAF. Mol. Cell, 5, 589-595.
29. Lemon, B. and Tjian, R. (2000) Orchestrated response: a symphony of transcription factors for gene control. Genes Dev., 14, 2551-2569.
30. Lemon, B., Inouye, C., King, D.S. and Tjian, R. (2001) Selectivity of chromatin-remodelling cofactors for ligand-activated transcription. Nature, 414, 924-928.
31. Leo, C. and Chen, J.D. (2000) The SRC family of nuclear receptor coactivators. Gene, 245, 1-11.
32. Li, J., O'Malley, B.W. and Wong, J. (2000) p300 requires its histone acetyltransferase activity and SRC-1 interaction domain to facilitate thyroid hormone receptor activation in chromatin. Mol. Cell. Biol., 20, 2031-2042.
33. Li, J., Lin, Q., Wang, W., Wade, P. and Wong, J. (2002) Specific targeting and constitutive association of histone deacetylase complexes during transcriptional repression. Genes Dev., 16, 687-692.
34. Mangelsdorf, D.J. et al. (1995) The nuclear receptor superfamily: the second decade. Cell, 83, 835-839.
35. McKenna, N.J., Xu, J., Nawaz, Z., Tsai, S.Y., Tsai, M.J. and O'Malley, B.W. (1999) Nuclear receptor coactivators: multiple enzymes, multiple complexes, multiple functions. J. Steroid Biochem. Mol. Biol., 69, 3-12.
36. Muchardt, C. and Yaniv, M. (1993) A human homologue of Saccharomyces cerevisiae SNF2/SWI2 and Drosophila brm genes potentiates transcriptional activation by the glucocorticoid receptor. EMBO J., 12, 4279-4290.
37. Narlikar, G.J., Fan, H.Y. and Kingston, R.E. (2002) Cooperation between complexes that regulate chromatin structure and transcription. Cell, 108, 475-487.
38. Nie, Z., Xue, Y., Yang, D., Zhou, S., Deroo, B.J., Archer, T.K. and Wang, W. (2000) A specificity and targeting subunit of a human SWI/SNF family-related chromatin-remodeling complex. Mol. Cell. Biol., 20, 8879-8888.
39. Peterson, C.L. and Workman, J.L. (2000) Promoter targefing and chromatin remodeling by the SWI/SNF complex. Curr. Opin. Genet. Dev., 10, 187-192.
40. Phelan, M.L., Sif, S., Narlikar, G.J. and Kingston, R.E. (1999) Reconstitution of a core chromatin remodeling complex from SWI/ SNF subunits. Mol. Cell, 3, 247-253.
41. Rachez, C., Suldan, Z., Ward, J., Chang, C.P., Burakov, D., Erdjument-Bromage, H., Tempst, P. and Freedman, L.P. (1998) A novel protein complex that interacts with the vitamin D3 receptor in a ligand-dependent manner and enhances VDR transactivation in a cell-free system. Genes Dev., 12, 1787-1800.
42. Roth, S.Y., Denu, J.M. and Allis, C.D. (2001) Histone acetyltransferases. Annu. Rev. Biochem., 70, 81-120.
43. Shang, Y., Hu, X., DiRenzo, J., Lazar, M.A. and Brown, M. (2000) Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell, 103, 843-852.
44. Sharma, D. and Fondell, J.D. (2002) Ordered recruitment of histone acetyltransferases and the TRAP/Mediator complex to thyroid hormone-responsive promoters in vivo. Proc. Natl Acad. Sci. USA, 99, 7934-7939.
45. Sheppard, H.M., Harries, J.C., Hussain, S., Bevan, C. and Heery, D.M. (2001) Analysis of the steroid receptor coactivator 1 (SRC1)-CREB binding protein interaction interface and its importance for the function of SRC1. Mol. Cell. Biol., 21, 39-50.
46. Turner, B.M. (2002) Cellular memory and the histone code. Cell, 111, 285-291.
47. Urnov, F.D. and Wolffe, A.P. (2001) A necessary good: nuclear hormone receptors and their chromatin templates. Mol. Endocrinol., 15, 1-16.
48. Wolffe, A.P. and Hayes, J.J. (1999) Chromatin disruption and modification. Nucleic Acids Res., 27, 711-720.
49. Wong, J., Shi, Y.B. and Wolffe, A.P. (1995) A role for nucleosome assembly in both silencing and activation of the Xenopus TRβA gene by the thyroid hormone receptor. Genes Dev., 9, 2696-2711.
50. Wong, J., Shi, Y.B. and Wolffe, A.P. (1997) Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: hormone-regulated chromatin disruption is not sufficient for transcriptional activation. EMBO J., 16, 3158-3171.