Biochemical analysis of the 20 S proteasome of Trypanosoma brucei

Journal of Biological Chemistry

Volumn 278, Issue 18, 2003, Pages 15800-15808

  Wang, Ching C ^a   Bozdech, Zbynek ^a   Liu, Chao lin ^a   Shipway, Aaron ^c   Backes, Bradley J ^c   Harris, Jennifer L ^c   Bogyo, Matthew ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; CATALYST ACTIVITY; CHEMICAL ANALYSIS; CHEMICAL BONDS;

PROTEASOMES;

ENZYME KINETICS;

AMINO ACID; CASPASE; CHYMOTRYPSIN; GLUTAMINE; HYDROLASE; PROTEASOME; REAGENT; TETRAPEPTIDE; TRYPSIN; CYSTEINE PROTEINASE; MULTIENZYME COMPLEX; PROTEIN SUBUNIT; PROTOZOAL PROTEIN;

ACIDITY; AFFINITY LABELING; ALKALINITY; ALPHA CHAIN; AMINO ACID SEQUENCE; ARTICLE; BETA CHAIN; CATALYSIS; CHEMICAL ANALYSIS; ENZYME ACTIVITY; ENZYME SPECIFICITY; FLUORESCENCE; GENETIC VARIABILITY; HUMAN; HYDROPHOBICITY; MAMMAL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DEGRADATION; PROTOZOON; TRYPANOSOMA BRUCEI; ANIMAL; BINDING SITE; CHEMISTRY; ENZYME ACTIVE SITE; ENZYMOLOGY; METABOLISM; MOLECULAR GENETICS;

MAMMALIA; PROTOZOA; TRYPANOSOMA; TRYPANOSOMA BRUCEI;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CATALYTIC DOMAIN; CYSTEINE ENDOPEPTIDASES; MOLECULAR SEQUENCE DATA; MULTIENZYME COMPLEXES; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN SUBUNITS; PROTOZOAN PROTEINS; SUBSTRATE SPECIFICITY; TRYPANOSOMA BRUCEI BRUCEI;

EID: 0038521266     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M300195200     Document Type: Article

References (41)

1. Coux, O., Tanaka, K., and Goldberg, A. L. (1996) Annu. Rev. Biochem. 65, 801-847
2. Hochstrasser, M. (1996) Annu. Rev. Genet. 30, 405-439
3. Baumeister, W., Walz, J. K., Zuhl, F., and Seemuller, E. (1998) Cell 92, 367-380
4. Groll, M., Ditzel, L., Lowe, J., Stock, D., Bochtler, M., Bartunik, H. D., and Huber, R. (1997) Nature 386, 463-471
5. Yang, Y., Fruh, K., Ahn, K., and Peterson, P. A. (1995) J. Biol. Chem. 270, 27687-27694
6. Glickman, M. H., Rubin, D. M., Coux, O., Wefes, I., Pfeifer, G., Cjeka, Z., Baumeister, W., Fried, V. A., and Finley, D. (1998) Cell 94, 615-623
7. Glickman, M. H., Rubin, D. M., Fried, V. A., and Finley, D. (1998) Mol. Cell. Biol. 18, 3149-3162
8. Ciechanover, A. (1998) EMBO J. 17, 7151-7160
9. Preckel, T., Fung-Leung, W. P., Cai, Z., Vitiello, A., Salter-Cid, L., Winqvist, O., Wolfe, T. G., Von Herrath, M., Angulo, A., Ghazal, P., Lee, J. D., Fourie, A. M., Wu, Y., Pang, J., Ngo, K., Peterson, P. A., Fruh, K., and Yang, Y. (1999) Science 286, 2162-2165
10. Ahn, J. Y., Tanahashi, N., Akiyama, K., Hisamatsu, H., Noda, C., Tanaka, K., Chung, C. H., Shibmara, N., Willy, P. J., Mott, J. D., Slaughter, C. A., and DeMartino, G. N. (1995) FEBS Lett. 366, 37-42
11. Tanahashi, N., Yokota, K., Ahn, J. Y., Chung, C. H., Fujiwara, T., Takahashi, E., DeMartino, G. N., Slaughter, C. A., Toyonaga, T., Yamamura, K., Shimbara, N., and Tanaka, K. (1997) Genes Cells 2, 195-211
12. Nazif, T., and Bogyo, M. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 2967-2972
13. Orlowski, M. (1990) Biochemistry 29, 10289-10297
14. Rivett, A. J. (1989) J. Biol. Chem. 264, 12215-12219
15. Enenkel, C., Lehmann, H., Kipper, J., Guckel, R., Hilt, W., and Wolf, D. H. (1994) FEBS Lett. 341, 193-196
16. Arendt, C. S., and Hochstrasser, M. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 7156-7161
17. Brannigan, J. A., Dodson, G., Duggleby, H. J., Moody, P. C., Smith, J. L., Tomchick, D. R., and Murzin, A. G. (1995) Nature 378, 416-419
18. Zwickl, P., Kleinz, J., and Baumeister, W. (1994) Nat. Struct. Biol. 1, 765-770
19. Lowe, J., Stock, D., Jap, B., Zwickl, P., Baumeister, W., and Huber, R. (1995) Science 268, 533-539
20. Seemuller, E., Lupas, A., Stock, D., Lowe, J., Huber, R., and Baumeister, W. (1995) Science 268, 579-582
21. Bogyo, M., Shin, S. B., McMaster, J. S., and Ploegh, H. L. (1998) Chem. Biol. 5, 307-320
22. Harris, J. L., Alper, P. B., Li, J., Rechsteiner, M., and Backes, B. J. (2001) Chem. Biol. 8, 1131-1141
23. Groll, M., Nazif, T., Huber, R., and Bogyo, M. (2002) Chem. Biol. 9, 655-662
24. Kisselev, A. F., Akopian, T. N., Castillo, V., and Goldberg, A. L. (1999) Mol. Cell 4, 395-402
25. Borst, P., and Fairlamb, A. H. (1998) Annu. Rev. Microbiol. 52, 745-778
26. Maser, P., Sutterlin, C., Kralli, A., and Kaminsky, R. (1999) Science 285, 242-244
27. Bass, K. E., Sommer, J. M., Cheng, Q. L., and Wang, C. C. (1992) J. Biol. Chem. 267, 11034-11037
28. Hua, S. B., Li, X., Coffino, P., and Wang, C. C. (1995) J. Biol. Chem. 270, 10264-10271
29. Li, Z., Zou, C.-B., Yao, Y., Hoyt, M. A., McDonough, S., Mackey, Z. B., Coffino, P., and Wang, C. C. (2002) J. Biol. Chem. 277, 15486-15498
30. Li, Z., and Wang, C. C. (2002) J. Biol. Chem. 277, 42686-42693
31. Yao, Y., Huang, L., Krutchinsky, A., Wong, M. L., Standing, K. G., Burlingame, A. L., and Wang, C. C. (1999) J. Biol. Chem. 274, 33921-33930
32. Cunningham, I. (1977) J. Protozool. 24, 325-329
33. Hua, S., To, W. Y., Nguyen, T. T., Wong, M. L., and Wang, C. C. (1996) Mol. Biochem. Parasitol. 78, 33-46
34. Realini, C., Jensen, C. C., Zhang, Z., Johnston, S. C., Knowlton, J. R., Hill, C. P., and Rechsteiner, M. (1997) J. Biol. Chem. 272, 25483-25492
35. Bogyo, M., McMaster, J. S., Gaczynska, M., Tortorella, D., Goldberg, A. L., and Ploegh, H. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 6629-6634
36. Heinemeyer, W., Fischer, M., Krimmer, T., Stachon, U., and Wolf, D. H. (1997) J. Biol. Chem. 272, 25200-25209
37. Zwickl, P., Grziwa, A., Puhler, G., Dahlman, B., Lottspeich, F., and Baumeister, W. (1992) Biochemistry 31, 964-972
38. Chen, P., and Hochstrasser, M. (1996) Cell 86, 961-972
39. Huang, L., Shen, M., Chernushevich, I., Burlingame, A. L., Wang, C. C., and Robertson, C. D. (1999) Mol. Biochem. Parasitol. 102, 211-223
40. Groll, M., Hinemeyer, W., Jager, S., Ullrich, T., Bochtler, M., Wolf, D. H., and Huber, R. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 10976-10983
41. Whitby, F. G., Masters, E. I., Kramer, L., Knowlton, J. R., Yao, Y., Wang, C. C., and Hill, C. K. (2000) Nature 408, 115-120