NMR analysis of methyl groups at 100-500 kDa: Model systems and Arp2/3 complex

Biochemistry

Volumn 42, Issue 28, 2003, Pages 8579-8586

  Kreishman Deitrick, Mara ^a   Egile, Coumaran ^b   Hoyt, David W ^c   Ford, Joseph J ^c   Li, Rong ^b   Rosen, Michael K ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEXATION; NUCLEAR MAGNETIC RESONANCE; NUCLEATION;

MACROMOELCULAR MACHINES;

BIOCHEMISTRY;

ACTIN; ACTIN RELATED PROTEIN 2-3 COMPLEX; AMIDE; ISOLEUCINE; LEUCINE; METHYL GROUP; PROTEIN; UNCLASSIFIED DRUG; VALINE;

ACTIN POLYMERIZATION; ARTICLE; CHEMICAL ANALYSIS; CROSS RELAXATION ENHANCED POLARIZATION TRANSFER; HETERONUCLEAR SINGLE QUANTUM COHERENCE; MACROMOLECULE; MOLECULAR INTERACTION; MOLECULAR WEIGHT; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTON TRANSPORT; STRUCTURE ANALYSIS; TRANSVERSE RELAXATION OPTIMIZED SPECTROSCOPY;

ACTIN-RELATED PROTEIN 2; ACTIN-RELATED PROTEIN 3; ACTINS; BINDING SITES; IMMUNOGLOBULIN G; MACROMOLECULAR SUBSTANCES; MAGNETIC RESONANCE SPECTROSCOPY; METHYLATION; MODELS, BIOLOGICAL; MOLECULAR WEIGHT; PROTEIN CONFORMATION; PROTEIN SUBUNITS; RECOMBINANT PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 0038455923     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi034536j     Document Type: Article

References (47)

1. Pervushin, K., Riek, R., Wider, G., and Wuthrich, K. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 12366-71.
2. Riek, R., Wider, G., Pervushin, K., and Wuthrich, K. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 4918-23.
3. Femandez, C., Adeishvili, K., and Wuthrich, K. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 2358-63.
4. Salzmann, M., Pervushin, K., Wider, G., Senn, H., and Wuthrich, K. (2000) J. Am. Chem. Soc. 122, 7543-8.
5. Evenas, J., Mittermaier, A., Yang, D., and Kay, L. E. (2001) J. Am. Chem. Soc. 123, 2858-64.
6. Yang, D., and Kay, L. E. (1999) J. Am. Chem. Soc. 121, 2571-5.
7. Tugarinov, V., Muhandiram, D. R., Ayed, A., and Kay, L. E. (2002) J. Am. Chem. Soc. 124, 10025-35.
8. Fiaux, J., Bertelsen, E. B., Horwich, A. L., and Wuthrich, K. (2002) Nature 418, 207-11.
9. Goto, N. K., Gardner, K. H., Mueller, G. A., Willis, R. C., and Kay, L. E. (1999) J. Biomol. NMR 13, 369-74.
10. Rosen, M. K., Gardner, K. H., Willis, R. C., Parris, W. E., Pawson, T., and Kay, L. E. (1996) J. Mol. Biol. 263, 627-36.
11. Kay, L. E., Bull, T. E., Nicholson, L. K., Griesinger, C., Schwalbe, H., and Torchia, D. A. (1992) J. Magn Reson. 100, 538-58.
12. Kay, L. E., and Gardner, K. H. (1997) Curr. Opin. Struct. Biol. 7, 722-31.
13. Hajduk, P. J., Augeri, D. J., Mack, J., Mendoza, R., Yang, J., Betz, S. F., and Fesik, S. W. (2000) J. Am. Chem. Soc. 122, 7898-904.
14. Janin, J., Miller, S., and Chothia, C. (1988) J. Mol. Biol. 204, 155-64.
15. Pellecchia, M., Meininger, D., Dong, Q., Chang, E., Jack, R., and Sem, D. S. (2002) J. Biomol. NMR 22, 165-73.
16. Robinson, R. C., Turbedsky, K., Kaiser, D. A., Marchand, J. B., Higgs, H. N., Choe, S., and Pollard, T. D. (2001) Science 294, 1679-84.
17. Volkmann, N., Amann, K. J., Stoilova-McPhie, S., Egile, C., Winter, D. C., Hazelwood, L., Heuser, J. E., Li, R., Pollard, T. D., and Hanein, D. (2001) Science 293, 2456-9.
18. Gosser, Y. Q., Nomanbhoy, T. K., Aghazadeh, B., Manor, D., Combs, C., Cerione, R. A., and Rosen, M. K. (1997) Nature 387, 814-9.
19. Winter, D., Podtelejnikov, A. V., Mann, M., and Li, R. (1997) Curr. Biol. 7, 519-29.
20. Winter, D., Lechler, T., and Li, R. (1999) Curr. Biol. 9, 501-4.
21. Higgs, H. N., Blanchoin, L., and Pollard, T. D. (1999) Biochemistry 38, 15212-22.
22. Pollard, T. D., and Cooper, J. A. (1984) Biochemistry, 23, 6631-41.
23. Spudich, J. A., and Watt, S. (1971) J. Biol. Chem. 246, 4866-71.
24. Cooper, J. A., Walker, S. B., and Pollard, T. D. (1983) J. Muscle Res. Cell Motil. 4, 253-62.
25. Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., Shoelson, S. E., Pawson, T., Forman-Kay, J. D., and Kay, L. E. (1994) Biochemistry 33, 5984-6003.
26. Sheely, M. L. (1932) Ind. Eng. Chem. 24, 1060-4.
27. Green, E., and Parke, J. P. (1939) J. Soc. Chem. Ind. 58, 319-20.
28. Wand, A. J., Urbauer, J. L., McEvoy, R. P., and Bieber, R. J. (1996) Biochemistry 35, 6116-25.
29. Winter, D. C., Choe, E. Y., and Li, R. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 7288-93.
30. Gardner, K. H., and Kay, L. E. (1997) J. Am. Chem. Soc. 119, 7599-600.
31. Smith, B. O., Ito, Y., Raine, A., Teichmann, S., Ben-Tovim, L., Nietlispach, D., Broadhurst, R. W., Terada, T., Kelly, M., Oschkinat, H., Shibata, T., Yokoyama, S., and Laue, E. D. (1996) J. Biomol. NMR 8, 360-8.
32. Metzler, W. J., Wittekind, M., Goldfarb, V., Mueller, L., and Farmer, B. T. (1996) J. Am. Chem. Soc. 118, 6800-1.
33. Hilty, C., Fernandez, C., Wider, G., and Wuthrich, K. (2002) J. Biomol. NMR 23, 289-301.
34. Lohr, F., and Ruterjans, H. (2002) J. Magn. Reson. 156, 10-18.
35. Uhrin, D., Uhrinova, S. C. L., Nairn, J., Price, N. C., and Barlow, P. N. (2000) J. Magn. Reson. 142, 288-93.
36. Hu, W., and Zuiderweg, E. R. P. (1996) J. Magn. Reson. B 113, 70-5.
37. Zwahlen, C., Vincent, S. J. F., Gardner, K. H., and Kay, L. E. (1998) J. Am. Chem. Soc. 120, 4825-31.
38. Tugarinov, V., and Kay, L. E. (2003) J. Am. Chem. Soc. 125, 5701-6.
39. Sherry, A. D., and Teherani, J. (1983) J. Biol. Chem. 258, 8663-9.
40. Gaponenko, V., Altieri, A. S., Li, J., and Byrd, R. A. (2002) J. Biomol. NMR 24, 143-8.
41. Tanford, C. (1961) Physical Chemistry of Macromolecules, Wiley, New York.
42. Cavanagh, J., Fairbrother, W. J., Palmer, A. G., III, and Skelton, N. J. (1996) Protein NMR Spectroscopy: Principles and Practice, Academic Press, San Diego.
43. Creighton, T. E. (1984) Proteins: Structures and Molecular Properties, W. H. Freeman & Co., New York.
44. Yguerabide, J., Epstein, H. F., and Stryer, L. (1970) J. Mol. Biol. 51, 573-90.
45. Krause, S., and O'Konski, C. T. (1963) Biopolymers 1, 503-15.
46. CRC Handbook of Chemistry and Physics, 83rd ed. (2002) CRC Press, Boca Raton.
47. 13C NMR Spectroscopy of Methyl Groups in Very High Molecular Weight Proteins and Protein Complexes, submitted.