Generation and comparison of EST-derived SSRs and SNPs in barley (Hordeum vulgare L.)

Hereditas

Volumn 135, Issue 2-3, 2001, Pages 145-151

  Kota, Raja ^a   Varshney, Rajeev Kumar ^a   Thiel, Thomas ^a   Dehmer, Klaus Johannes ^a   Graner, Andreas ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA; PRIMER DNA;

BARLEY; COMPARATIVE STUDY; CONFERENCE PAPER; CONTROLLED STUDY; DINUCLEOTIDE REPEAT; DNA DENATURATION; EXPRESSED SEQUENCE TAG; GENE IDENTIFICATION; GENE LOCUS; GENE SEQUENCE; GENE TARGETING; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; GENOME; GENOTYPE; NONHUMAN; PEDIGREE ANALYSIS; SIMPLE SEQUENCE REPEAT; SINGLE NUCLEOTIDE POLYMORPHISM; TRINUCLEOTIDE REPEAT;

EMBRYOPHYTA; HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE;

EID: 0036306905     PISSN: 00180661     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1601-5223.2001.00145.x     Document Type: Conference Paper

References (31)

1. An ecogeographical study of the genus Hordeum
2. Computational and experimental characterisation of physically clustered simple sequence repeats in plants
3. Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.)
4. Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum
5. Molecular mapping of the Oregon Wolfe Barleys: A phenotypically polymorphic doubled-haploid population
6. Use of EST-derived microsatellites to estimate genetic diversity in commercial durum wheat
7. Construction of an RFLP map of barley
8. Identification by denaturing high-performance liquid chromatography of numerous polymorphisms in a candidate region for multiple sclerosis susceptibility
9. The codon preference plot: Graphic analysis of protein coding sequences and prediction of gene expression
10. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
11. Discovery and assay of single nucleotide polymorphism in barley (Hordeum vulgare)
12. A molecular isozyme and morphological map of the barley (Hordeum vulgare) genome
13. Application of DHPLC for mapping of single nucleotide polymorphisms (SNPs) in barley (Hordeum vulgare L.)
14. Detection of single nucleotide polymorphisms with the WAVE DNA fragment analysis system
15. Relationships among European barley germplasm: I. Genetic diversity among winter and spring cultivars revealed by RFLPs
16. EST analysis in barley defines a unigene set comprising 4,000 genes
17. Characterisation and genetic mapping of simple sequence repeats in the rice genome
18. DNA mutation detection using denaturing high performance liquid chromatography (DHPLC)
19. Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars
20. Polymorphism revealed by simple sequence repeats
21. A simple sequence repeat-based linkage map of barley
22. SNP frequency and allelic haplotype of Beta vulgaris expressed genes
23. Microsatellite derived from ESTs, and their comparison with those derived by other methods
24. Analysis of SSRs derived from grape ESTs
25. Mapping wheat ESTs by haplotype specific SNPs
26. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
27. Denaturing high performance liquid chromatography (DHPLC) detects reliably BRCA1 and BRCA2 mutations
28. Large-scale identification, mapping and genotyping of single-nucleotide polymorphisms in the human genome
29. Homology of AFLP products in three mapping populations of barley
30. RAPD-mapping of the distal portion of chromosome 3 of barley, including the BAMMV/BAYMV resistance gene ym4