A novel strategy for the assignment of side-chain resonances in completeley deuterated large proteins using 13C spectroscopy

Journal of Biomolecular NMR

Volumn 26, Issue 2, 2003, Pages 167-179

  Eletsky, Alexander ^a   Moreira, Osvaldo ^a   Kovacs, Helena ^b   Pervushin, Konstantin ^a  

^a ETH ZURICH   (Switzerland)

^b BRUKER BIOSPIN AG   (Switzerland)

Author keywords

2D two dimensional; BsCM 44 kDa enzyme chorismate mutase (EC 5.4.99.5) from Bacillus subtilis; RDC residual dipole dipole coupling; Transverse relaxation optimized spectroscopy; TROSY

Indexed keywords

ALIPHATIC COMPOUND; CARBON 13; CHORISMATE MUTASE; METHYL GROUP; MONOMER;

ARTICLE; BACILLUS SUBTILIS; CARBON NUCLEAR MAGNETIC RESONANCE; CHEMICAL BINDING; CHEMICAL MODIFICATION; CHEMICAL PROCEDURES; CONTROLLED STUDY; ELECTRON SPIN RESONANCE; MATHEMATICAL MODEL; MOLECULAR WEIGHT; NUCLEAR OVERHAUSER EFFECT; PEPTIDE MAPPING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DENATURATION; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE; PROTON TRANSPORT; REACTION TIME; SIGNAL PROCESSING; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; AMINO ACIDS, AROMATIC; BACILLUS SUBTILIS; CARBON ISOTOPES; CHORISMATE MUTASE; DEUTERIUM; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTEINS;

BACILLUS SUBTILIS;

EID: 0038324522     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1023572320699     Document Type: Article

References (69)

1. Arora, A. and Tamm, L.K. (2001) Curr. Opin. Struct. Biol., 11, 540-547.
2. Bax, A. (1994) Curr. Opin. Struct. Biol., 4, 738-744.
3. Browne, D.T., Kenyon, G.L., Packer, E.L., Sternlic, H and Wilson, D.M. (1973) J. Am. Chem. Soc., 95, 1316-1323.
4. Caffrey, M., Cai, M.L., Kaufman, J., Stahl, S.J., Wingfield, P.T., Gronenborn, A.M. and Clore, G.M. (1997) J. Mol. Biol., 271, 819-826.
5. Cavanagh, J., Fairbrother, W.J., Palmer, A.G. and Skelton, N.J. (1996) Protein NMR Spectroscopy: Principles and Practice, Academic Press, New York, NY.
6. Chook, Y.M., Gray, J.V., Ke, H.M. and Lipscomb, W.N. (1994) J. Mol. Biol., 240, 476-500.
7. Chou, J.J, Gaemers, S., Howder, B., Louis, J.M. and Bax, A. (2001) J. Biomol. NMR, 21, 377-382.
8. Choy, W.Y., Tollinger, M., Mueller, G.A. and Kay, L.E. (2001) J. Biomol. NMR, 21, 31-40.
9. Clore, G.M. and Gronenborn, A.M. (1991) Science, 252, 1390-1399.
10. Clore, G.M. and Gronenborn, A.M. (1997) Nat. Struct. Biol., 4 (Suppl.), 849-853.
11. Clore, G.M. and Gronenborn, A.M. (1998) Curr. Opin. Chem. Biol., 2, 564-570.
12. Clore, G.M. and Schwieters, C.D. (2002) Curr. Opin. Struct. Biol., 12, 146-153.
13. Clore, G.M., Starich, M.R., Bewley, C.A., Cai, M.L. and Kuszewski, J. (1999) J. Am. Chem. Soc., 121, 6513-6514.
14. Dingley, A.J. and Grzesiek, S. (1998) J. Am. Chem. Soc., 120, 8293-8297.
15. Eletsky, A., Heinz, T., Moreira, O., Kienhöfer, A., Hilvert, D. and Pervushin, K. (2002) J. Biomol. NMR, 24, 31-39.
16. Eletsky, A., Kienhöfer, A. and Pervushin, K. (2001) J. Biomol. NMR, 20, 177-180.
17. Ernst, M. and Ernst, R.R. (1994) J. Magn. Reson. Ser, A110, 202-213.
18. Ernst, R.R., Bodenhausen, G. and Wokaun, A. (1987) The Principles of Nuclear Magnetic Resonance in One and Two Dimensions, Clarendon, Oxford.
19. Farmer, B.T. and Venters, R.A. (1996) J. Biomol. NMR, 7, 59-71.
20. Fernandez, C., Adeishvili, K. and Wuthrich, K. (2001a) Proc. Natl. Acad. Sci. USA, 98, 2358-2363.
21. Fernandez, C., Hilty, C., Bonjour, S., Adeishvili, K., Pervushin, K. and Wüthrich, K. (2001b) FEBS Lett., 504, 173-178.
22. Fischer, M.W.F., Zeng, L. and Zuiderweg, E.R.P. (1996) J. Am. Chem. Soc., 118, 12457-12458.
23. Gardner, K.H. and Kay, L.E. (1998) Annu. Rev. Biophys. Biomol. Struct., 27, 357-406.
24. Gardner, K.H., Rosen, M.K. and Kay, L.E. (1997) Biochemistry, 36, 1389-1401.
25. Grzesiek, S., Anglister, J., Ren, H. and Bax, A. (1993) J. Am. Chem. Soc., 115, 4369-4370.
26. Guntert, P., Mumenthaler, C. and Wüthrich, K. (1997) J. Mol. Biol., 273, 283-298.
27. Hwang, P.M., Choy, W.Y., Lo, E.L., Chen, L., Forman-Kay, J.D., Raetz, C.R., Prive, G.G., Bishop, R.E. and Kay, L.E. (2002) Proc. Natl. Acad. Sci. USA, 99, 13560-13565.
28. Ikura, M., Kay, L.E., Tschudin, R. and Bax, A. (1990) J. Magn. Reson., 86, 204-209.
29. Kadkhodaie, M., Rivas, O., Tan, M., Mohebbi, A. and Shaka, A.J. (1991) 91, 437-443.
30. Kay, L.E. and Gardner, K.H. (1997) Curr. Opin. Struct. Biol., 7, 722-731.
31. LeMaster, D.M. (1989) Meth. Enzymol., 177, 23-43.
32. LeMaster, D.M. (1990a) Quart. Rev. Biophys., 23, 133-174.
33. LeMaster, D.M. (1990b) Annu. Rev. Biophys. Biophys. Chem., 19, 243-266.
34. Lohr, F. and Ruterjans, H. (2002) J. Magn. Reson., 156, 10-18.
35. Machonkin, T.E., Westler, W.M. and Markley, J.L. (2002) J. Am. Chem. Soc., 124, 3204-3205.
36. Madi, Z.L., Brutscher, B., Schulte-Herbruggen, T., Bruschweiler, R. and Ernst, R. R. (1997) Chem. Phys. Lett., 268, 300-305.
37. Marion, D., Ikura, M., Tschudin, R. and Bax, A. (1989) J. Magn. Reson., 85, 393-399.
38. Mulder, F.A.A., Ayed, A., Yang, D.W., Arrowsmith, C.H. and Kay, L.E. (2000) J. Biomol. NMR, 18, 173-176.
39. Mumenthaler, C., Guntert, P., Braun, W. and Wüthrich, K. (1997) J. Biomol. NMR, 10, 351-362.
40. Oh, B.H., Westler, W.M., Darba, P. and Markley, J.L. (1988) Science, 240, 908-911.
41. Pervushin, K. and Eletsky, A. (2003) J. Biomol. NMR, 25, 147-152.
42. Pervushin, K., Ono, A., Fernandez, C., Szyperski, T., Kainosho, M. and Wuthrich, K. (1998) Proc. Natl. Acad. Sci. USA, 95, 14147-14151.
43. Pervushin, K., Riek, R., Wider, G. and Wüthrich, K. (1997) Proc. Natl. Acad. Sci. USA, 94, 12366-12371.
44. Peters, J.A., Huskens, J. and Raber, D.J. (1996) Prog. Nucl. Magn. Reson. Spectrosc., 28, 283-350.
45. Pintacuda, G. and Otting, G. (2002) J. Am. Chem. Soc., 124, 372-373.
46. Powell, D.H., Ni Dhubhghaill, O.M., Pubanz, D., Helm, L., Lebedev, Y.S., Schlaepfer, W. and Merbach, A.E. (1996) J. Am. Chem. Soc., 118, 9333-9346.
47. Reif, B., Hennig, M. and Griesinger, C. (1997) Science, 276, 1230-1233.
48. Reynolds, W.F. and Enriquez, R.G. (2002) J. Nat. Prod., 65, 221-244.
49. Salzmann, M., Pervushin, K., Wider, G., Senn, H. and Wüthrich, K. (1999a) J. Biomol. NMR, 14, 85-88.
50. Salzmann, M., Wider, G., Pervushin, K., Senn, H. and Wüthrich, K. (1999b) J. Am. Chem. Soc., 121, 844-848.
51. Salzmann, M., Pervushin, K., Wider, G., Senn, H. and Wüthrich, K. (2000) J. Am. Chem. Soc., 122, 7543-7548.
52. Sass, H.J., Musco, G., Stahl, S.J., Wingfield, P.T. and Grzesiek, S. (2000) J. Biomol. NMR, 18, 303-309.
53. Schubert, M., Kolbe, M., Kessler, B., Oesterhelt, D. and Schmieder, P. (2002) Chembiochem, 3, 1019-1023.
54. Shaka, A.J., Keeler, J., Frenkiel, T. and Freeman, R. (1983) J. Magn. Reson., 52, 335-338.
55. Sharp, R., Lohr, L. and Miller, J. (2001) Prog. Nucl. Magn. Reson. Spectrosc., 38, 115-158.
56. Takahashi, H., Nakanishi, T., Kami, K., Arata, Y. and Shimada, I. (2000) Nat. Struct. Biol., 7, 220-223.
57. Tjandra, N. and Bax, A. (1997) Science, 278, 1111-1114.
58. Tjandra, N., Garrett, D.S., Gronenborn, A.M., Bax, A. and Clore, G. M. (1997a) Nat. Struct. Biol., 4, 443-449.
59. Tjandra, N., Omichinski, J.G., Gronenborn, A.M., Clore, G.M. and Bax, A. (1997b) Nat. Struct. Biol., 4, 732-738.
60. Tolman, J.R., Flanagan, J.M., Kennedy, M.A. and Prestegard, J.H. (1995) Proc. Natl. Acad. Sci. USA, 92, 9279-9283.
61. Tugarinov, V., Muhandiram, R., Ayed, A. and Kay, L.E. (2002) J. Am. Chem. Soc., 124, 10025-10035.
62. Tycko, R., Blanco, F.J. and Ishii, Y. (2000) J. Am. Chem. Soc., 122, 9340-9341.
63. Venters, R.A., Farmer, B.T., Fierke, C.A. and Spicer, L.D. (1996) J. Mol. Biol., 264, 1101-1116.
64. Wagner, G. (1993) J. Biomol. NMR, 3, 375-385.
65. Westler, W.M., Kainosho, M., Nagao, H., Tomonaga, N. and Markley, J.L. (1988) J. Am. Chem. Soc., 110, 4093-4095.
66. Wu, Z. R., Tjandra, N. and Bax, A. (2001) J. Am. Chem. Soc., 123, 3617-3618.
67. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York, NY.
68. Yang, D.W. and Kay, L.E. (1999) J. Am. Chem. Soc., 121, 2571-2575.
69. Zhu, G., Xia, Y.L., Sze, K.H. and Yan, X.Z. (1999) J. Biomol. NMR, 14, 377-381.