Transcript analysis of the tobacco plastid operon rps2/atpI/H/F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of the atpI coding sequence

Molecular and General Genetics

Volumn 257, Issue 3, 1998, Pages 299-307

  Miyagi, T ^a   Kapoor, S ^a   Sugita, M ^a   Sugiura, M ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

atpI H F A operon; Differential promoter usage; NCII promoter; Nicotiana tabacum; Transcriptional analysis

Indexed keywords

PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; SPECTINOMYCIN; STREPTOMYCIN;

ARTICLE; CELL CULTURE; CHLOROPLAST; CONSENSUS SEQUENCE; CONTROLLED STUDY; GENE EXPRESSION; GENE SEQUENCE; GENETIC TRANSCRIPTION; NONHUMAN; OPERON; PHOTOSYNTHESIS; PLANT LEAF; PLASTID; PRIORITY JOURNAL; PROMOTER REGION;

BASE SEQUENCE; BLOTTING, NORTHERN; MOLECULAR SEQUENCE DATA; OPERON; PLANTS, TOXIC; PLASTIDS; PROMOTER REGIONS (GENETICS); PROTON-TRANSLOCATING ATPASES; RNA, MESSENGER; SEQUENCE ALIGNMENT; TOBACCO; TRANSCRIPTION, GENETIC;

EMBRYOPHYTA; NICOTIANA TABACUM; TABACUM;

EID: 0031885407     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050651     Document Type: Article

References (27)

1. Allison LA, Maliga P (1995) Light-responsive and transcription-enhancing elements regulate the plastid psbD core promoter. EMBO J 14:3721-3730
2. Allison LA, Simon LD, Maliga P (1996) Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants. EMBO J 15:2802-2809
3. Berends-Sexton T, Christopher DA, Mullet JE (1990) Light-induced switch in barley psbD-psbC promoter utilization: a novel mechanism regulating chloroplast gene expression. EMBO J 9: 4485-4494
4. Christopher DA, Kim M, Mullet JE (1992) A novel light-regulated promoter is conserved in cereal and dicot chloroplasts. Plant Cell 4:785-798
5. 0 component, is encoded in the pea chloroplast genome. EMBO J 5:217-222
6. Fromont-Racine M, Bertrand E, Pictet R, Grange T (1993) A highly sensitive method for mapping the 5′ termini of mRNAs. Nucleic Acids Res 21:1683-1684
7. Gruissem W, Tonkyn JC (1993) Control mechanisms of plastid gene expression. Critical Rev Plant Sci 12:19-55
8. Hennig J, Herrmann RG (1986) Chloroplast ATP synthase of spinach contains nine nonidentical subunit species, six of which are encoded by plastid chromosomes in two operons in a phylogenetically conserved arrangement. Mol Gen Genet 203: 117-128
9. Hess WR, Prombona A, Feider B, Subramanian AR, Börner T (1993) Chloroplast rps15 and the rpoB/C1/C2 gene clusters are strongly transcribed in ribosome-deficient plastids - evidence for a functioning non-chloroplast-encoded RNA polymerase. EMBO J 12:563-571
10. +-ATP synthase complex and ribosomal protein S2. J Mol Biol 196:283-298
11. 0 subunit III of ATP synthase. Gene 90:227-233
12. Igloi GL, Kössel H (1992) The transcription apparatus of chloroplasts. Crit Rev Plant Sci 10:525-558
13. Kapoor S, Wakasugi T, Deno H, Sugiura M (1994) An atpE-specific promoter within the coding region of the atpB gene in tobacco chloroplast DNA. Curr Genet 26:263-268
14. Kapoor S, Suzuki JY, Sugiura M (1997) Identification and functional significance of a new class of non-consensus-type plastid promoters. Plant J 11:327-337
15. Link G (1994) Plastid differentiation: organelle promoters and transcription factors. In: Novel L (ed) Plant promoters and transcription factors. Springer Verlag, Heidelberg, pp 63-83
16. Mullet JE (1993) Dynamic regulation of chloroplast transcription. Plant Physiol 103:309-313
17. 0 (atpH). Genetics 116:127-139
18. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual (2nd edn). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
19. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata N, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5: 2043-2049
20. Stahl DJ, Rodermel SR, Bogorad L, Subramanian AR (1993) Cotranscription pattern of an introgressed operon in the maize chloroplast genome comprising four ATP synthase subunit genes and the ribosomal protein gene rps2. Plant Mol Biol 21:1069-1076
21. Stollar NE, Hollingsworth MJ (1994) Expression of the large ATP synthase gene cluster from spinach chloroplast. J Plant Physiol 144:141-149
22. Sugiura M (1992) The chloroplast genome. Plant Mol Biol 19: 149-168
23. Sugiura M, Shinozaki K, Zaita N, Kusuda J, Kumano M (1986) Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: mapping of eleven ribosomal protein genes. Plant Sci 44:211-216
24. Tiller K, Eisermann A, Link G (1991) The chloroplast transcription apparatus from mustard (Sinapis alba L.). Evidence for three different transcription factors which resemble bacterial σ factors. Eur J Biochem 198:93-99
25. Vera A, Sugiura M (1992) Combination of in-vitro capping and ribonuclease protection improves the detection of transcription initiation sites in chloroplasts. Plant Mol Biol 19:309-311
26. Wada T, Tunoyama Y, Shiina T, Toyoshima Y (1994) In vitro analysis of light-induced transcription in the wheat psbD/C gene cluster using plastid extracts from dark-grown and short term-illuminated seedlings. Plant Physiol 104:1259-1267
27. Woodbury NW, Dobres M, Thompson WF (1989) The identification and localization of 33 pea chloroplast transcription initiation sites. Curr Genet 16:433-445