Identification of critical nucleotide positions for plastid RNA editing site recognition

RNA

Volumn 3, Issue 10, 1997, Pages 1194-1200

  Bock, Ralph ^a   Hermann, Marita ^a   Fuchs, Melanie ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

Author keywords

Chloroplast; MRNA editing; Nicotiana; Plastid transformation; RNA processing; Tabacum

Indexed keywords

RNA;

ARTICLE; BINDING SITE; DNA SEQUENCE; MOLECULAR RECOGNITION; NUCLEOTIDE SEQUENCE; PLANT CELL; POINT MUTATION; PRIORITY JOURNAL; RNA EDITING; RNA PROCESSING; SEQUENCE ANALYSIS;

BIOLISTICS; CHLOROPLASTS; CYTOSINE; MUTAGENESIS; NUCLEOTIDES; OLIGODEOXYRIBONUCLEOTIDES; PLANT PROTEINS; PLANTS, TOXIC; POINT MUTATION; POLYMERASE CHAIN REACTION; RNA EDITING; RNA, MESSENGER; RNA, PLANT; SEQUENCE DELETION; TOBACCO; TRANSCRIPTION, GENETIC; TRANSFORMATION, GENETIC; URACIL;

EMBRYOPHYTA; NICOTIANA; NICOTIANA TABACUM; TABACUM;

EID: 0030770731     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (31)

1. Araya A, Domec C, Begu D, Litvak S. 1991. An in vitro system for the editing of ATP synthase subunit 8 mRNA using wheat mitochondrial extracts. Proc Natl Acad Sci USA 89:1040-1044.
2. Bachmann B, Lüke W, Hunsmann G. 1990. Improvement of PCR amplified DNA sequencing with the aid of detergents. Nucleic Acids Res 18:1309.
3. Benne R. 1996. RNA editing: How a message is changed. Curr Opin Genet & Dev 6:221-231.
4. Bock R, Hermann M, Kössel H. 1996. In vivo dissection of cis-acting determinants for plastid RNA editing. EMBO J 15:5052-5059.
5. Bock R, Koop HU. 1997. Extraplastidic site-specific factors mediate RNA editing in chloroplasts. EMBO J 16:3282-3288.
6. Bock R, Kössel H, Maliga P. 1994. Introduction of a heterologous editing site into the tobacco plastid genome: The lack of RNA editing leads to a mutant phenotype. EMBO J 13:4623-4628.
7. Chaudhuri S, Carrer H, Maliga P. 1995. Site-specific factor involved in the editing of the psbl. mRNA in tobacco plasyids. EMBO J 14:2951-2957.
8. Chaudhun S, Maliga P. 1996. Sequences directing C to U editing of the plastid psbl. mRNA are located within a 22 nucleotide segment spanning the editing site. EMBO J 15:5958-5964.
9. Covello PS, Gray MW. 1989. RNA editing in plant mitochondria. Nature 341:662-666.
10. Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus 12:13-15.
11. Freyer R, López C, Maier RM, Martin M, Sabater B, Kössel H. 1995. Editing of the chloroplast ndhB encoded transcript shows divergence between closely related members of the grass family (Poaceae). Plant Mol Biol 29:679-684.
12. Gualberto JM, Lamattina L, Bonnard G, Weil JH, Grienenberger JM. 1989. RNA editing in wheat mitochondria results in the conservation of protein sequences. Nature 341:660-662.
13. Hanson MR, Sutton CA, Lu B. 1996. Plant organelle gene expression: Altered by RNA editing. Trends Plant Sci 1:57-64.
14. Hiesel R, Wissinger B, Schuster W, Brennicke A. 1989. RNA editing in plant mitochondria. Science 246:1632-1634.
15. Hoch B, Maier RM, Appel K, Igloi GL, Kössel H. 1991. Editing of a chloroplast mRNA by creation of an initiation codon. Nature 353:178-180.
16. Kanevski I, Maliga P. 1994. Relocation of the plastid rbcL gene to the nucleus yields functional ribulose-1,5-bisphosphate carboxylase in tobacco chloroplasfs. Proc Natl Acad Sci USA 1:1969-1973.
17. Kudla J, Igloi GL, Metzlaff M, Hagemann R, Kössel H. 1992. RNA editing in tobacco chloroplasts leads to the formation of a translatable psbL mRNA by a C to U substitution within the initiation codon. EMBO J 11:1099-1103.
18. Maier RM, Neckermann K. Igloi GL, Kössel H. 1995. Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol 251:614-628.
19. Maier RM. Zeltz P, Kössel H. Bonnard G. Gualberto JM. Grienenberger JM. 1996. RNA editing in plant mitochondria and chloroplasts. Plant Mol Biol 32:343-365.
20. Matsubayashi T, Wakasugi T, Shinozaki K, Yamaguchi-Shinozaki K, Zaita N, Hidaka T, Meng BY, Ohto C, Tanaka M, Kato A, Maruyama T, Sugiura M. 1987. Six chloroplast genes (ndhA-F) homologous to to human mitochondrial genes encoding components of the respiratory chain NADH dehydrogenase are actively expressed: Determination of the splice sites in ndhA and ndhB pre-mRNAs. Mol Gen Genet 210385-393.
21. Murashige T. Skoog F. 1962. A revised medium for rapid growth and bioassays with tobacco tissue culture Physiol Plant 15:473-497.
22. Rajasekhar VK, Mulligan RM. 1903. RNA editing in plant mitochondria: Alpha-phosphate is retained during C-to-U conversion in mRNAs. Plant Cell 5:1843-1852.
23. Schuster W, Brennicke A. 1994. The plant mitochondrial genome: Physical structurem information content RNA editing, and gene migration. Annu Rev Plant Physiol Plant Mol Biol 45:61-78.
24. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Thodoh N, Shimada H, Sugiura M. 1986. The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and gene expression. EMBO J 5:2043-2049.
25. Simpson L. Emeson RB. 1996. RNA editing. Annu Rev Neurosci 19:27-52.
26. Sutton CA, Conklin PL, Pruitt KD, Hanson MR. 1991. Editing of pre-mRNAs can occur before cis- and trans-splicing in petunia mitochondria. Mol Cell Biol 11:4274-4277.
27. Svab Z, Hajdukiewicz P, Maliga P. 1990. Stable transformation of plastids in higher plants. Proc Natl Acad Sci USA 87:8526-8530.
28. Svab Z, Maliga P. 1993. High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene. Proc Natl Acad Sci USA 90:913-917.
29. Yang AJ, Mulligan RM. 1991. RNA editing intermediates of cox2 transcripts in maize mitochondria. Mol Cell Biol 11:4278-4281.
30. Yu W, Schuster W. 1995. Evidence for a site-specific cytidine deamination reaction involved in C to U RNA editing in plant mitochondria. J Biol Chem 31:18227-18233.
31. Zeltz P, Kadowaki Ki, Kubo N, Maier RM, Hirai A. Kössel H. 1996. A promiscuous chloroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited. Plant Mol Biol 31:647-656.