Occurrence and diversity of mesophilic Shewanella strains isolated from the North-West Pacific Ocean

Systematic and Applied Microbiology

Volumn 26, Issue 2, 2003, Pages 293-301

  Ivanova, Elena P ^a,b   Sawabe, Tomoo ^c   Zhukova, Natalia V ^d   Gorshkova, Nataliya M ^a   Nedashkovskaya, Olga I ^a   Hayashi, Karin ^c   Frolova, Galina M ^a   Sergeev, Alexander F ^e   Pavel, Konstantin G ^f   Mikhailov, Valery V ^a   Nicolau, Dan V ^b  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b SWINBURNE UNIVERSITY OF TECHNOLOGY   (Australia)

^c HOKKAIDO UNIVERSITY   (Japan)

^d INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

^e IL ICHEV PACIFIC OCEANOLOGICAL INSTITUTE   (Russian Federation)

^f Pacific Fisheries Research Center   (Russian Federation)

Author keywords

S. colwelliana; S. fidelis; S. japonica; Shewanella

Indexed keywords

DNA 16S; SEA WATER;

ANTIFUNGAL ACTIVITY; ANTIMICROBIAL ACTIVITY; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CHEMOTAXONOMY; DNA SEQUENCE; GENETIC VARIABILITY; GENUS; INVERTEBRATE; MARINE ENVIRONMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC OCEAN; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEDIMENT; SHEWANELLA; SHEWANELLA COLWELLIANA; SHEWANELLA JAPONICA;

AMPHIOPHOLIS KOCHII; APOSTICHOPUS; APOSTICHOPUS JAPONICUS; BACTERIA (MICROORGANISMS); CUCUMARIA JAPONICA; GAMMAPROTEOBACTERIA; HOLOTHURIA; INVERTEBRATA; JAPONICA; NEGIBACTERIA; OPHIUROIDEA; PHASCOLOSOMA JAPONICUM; PROKARYOTA; SHEWANELLA; SHEWANELLA COLWELLIANA; SHEWANELLA FIDELIS; SHEWANELLA JAPONICA; SIPUNCULA;

EID: 0037676036     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/072320203322346155     Document Type: Article

References (48)

1. Ashen, J. B., Goff, L. J.: Molecular and ecological evidence for species specificity and coevolution in a group of marine algal-bacterial symbioses. Appl. Environ. Microbiol. 66, 3024-3030 (2000).
2. Barry, A. I.: Procedures and theoretical considerations for testing antimicrobial agents in agar media. In: Logan V (ed) Antibiotics in laboratory medicine. William & Wilkins, Baltimore, MD, pp. 10-16 (1980)
3. Baumann, L., Baumann, P., Mandel, M., Allen, R. D.: Taxonomy of aerobic marine eubacteria. J. Bacteriol. 110, 402-429 (1972).
4. Bowman, J. P., McCammon, S. A., Nichols, D. S., Skerratt, J. H., Res, S. M., Nichols, P. D., McMeekin, T. A.: Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:53) and grow anaerobically by dissimilatory Fe(III) reduction. Int. J. Syst. Bacteriol. 47, 1040-1047 (1997).
5. Bowman, J. P., McCammon, S. A., Brown, M. V., Nichols, D. S., McMeekin, T. A.: Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl. Environ. Microbiol. 63, 3068-3078 (1997).
6. Bozal, N., Montes, M. J., Tudela E, Jimenez, E, Guinea, J.: Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. Int. J. Syst. Evol. Microbiol. 52, 195-205 (2002).
7. Brettar, I., Moore, E. R., Hofle, M. G.: Phylogeny and Abundance of Novel Denitrifying Bacteria Isolated from the Water Column of the Central Baltic Sea. Microb. Ecol. 42, 295-305 (2001).
8. Daskaleros, P. A., Stoebner, J. A., Payne, S. M.: Iron uptake in Plesiomonas shigelloides: cloning of the genes for the heme-iron uptake system. Infect. Immun. 59, 2706-2711 (1991).
9. Delong, E. F., Franks, D. G., Yayanos, A. A.: Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria. Appl. Environ. Microbiol. 63, 2105-2108 (1997).
10. Dos Santos, J. P., Iobbi-Nivol, C., Couillault, C., Giordano, G., Mejean, V.: Molecular analysis of the trimethylamine N-oxide (TMAO) reductase respiratory system from a Shewanella species. J. Mol. Biol. 284, 421-433 (1998).
11. Eilers, H, Pernthaler, J., Amann, R.: Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts. Appl. Environ. Microbiol. 66, 4634-4640 (2000a).
12. Eilers, H., Pernthaler, J., Glockner, F. O., Amann, R.: Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ. Microbiol. 66, 3044-3051 (2000b).
13. Gascuel, O.: BIONJ, an improved version of the NJ algorithm based on a simple method of sequence data. Mol. Biol. Evol. 14, 685-695 (1997).
14. Gonzalez, J. M., Simo, R., Massana, R., Covert, J. S., Casamayor, E. O., Pedros-Alio, C., Moran, M. A.: Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl. Environ. Microbiol. 66, 4237-4246 (2000).
15. Hold, G. L., Smith, E. A., Birkbeck, T. H., Gallacher, S.: Comparison of paralytic shellfish toxin (PST) production by the dinoflagellates Alexandrium lusitanicum NEPCC 253 and Alexandrium tamarense NEPCC 407 in the presence and absence of bacteria. FEMS Microbiol. Ecol. 36, 223-234 (2001).
16. Holmström, C., Kjelleberg, S.: Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol. Ecol. 30, 285-293 (1999).
17. Holmström, C. Egan, S., Franks, A., McCloy, S., Kjelleberg, S.: Antifouling activities expressed by marine surface associated Pseudoalteromonas species. FEMS Microbiol. Ecol. 41, 47-58 (2002).
18. Ivanova, E. P., Kiprianova, E. A., Mikhailov, V. V., Levanova, F. G., Garagulya, A. G., Gorshkova, N. M., Yumoto, N., Yoshikawa, S.: Characterization and identification of marine Alteromonas nigrifaciens strains and emendation of the description. Int. J. Syst. Bacteriol. 46, 223-228 (1996).
19. Ivanova, E. P., Kiprianova, E. A., Mikhailov, V. V., Levanova, G. E, Garagulya, A. D., Gorshkova, N. M., Vysotskii, M. V., Frolova, G. M., Nicolau, D. V., Yumoto Y., Yoshikawa, S.: Phenotypic diversity of Pseudoalteromonas citrea from different marine habitats and emendation of the description. Int. J. Syst. Bacteriol. 48, 247-254 (1998).
20. Ivanova, E. P., Zhukova, N. V., Svetashev, V. I., Gorshkova, N. M, Kurilenko, V. V., Frolova, G. M., Mikhailov, V. V.: Evaluation of phospholipid and fatty acid compositions as chemotaxonomic markers of Alteromonas-like proteobacteria. Curr. Microbiol. 41, 341-345 (2000).
21. Ivanova, E. P., Sawabe, T., Gorshkova, N. M., Svetashev, V. I., Mikhailov, V. V., Nicolau, D. V., Christen, R.: Shewanella japonica sp. nov. Int. J. Syst. Evol. Microbiol. 51, 1027-1033 (2001).
22. Ivanova, E. P., Sawabe, T., Hayashi, K., Gorshkova, N. M., Zhukova, N. V., Nedshkovskaya, O. I., Mikhailov, V. V., Nicolau, D.V., Christen, R.: Shewanella fidelis sp. nov, isolated from sediments and seawater. Int. J. Syst. Evol. Microbiol. 53, 577-582 (2003).
23. Jannasch, H. W., Jones, G. E.: Bacterial population in sea-water as determined by different methods of enumeration. Limnol. Oceanogr. 4, 128-139 (1959).
24. Kato, C., Nogi, Y.: Correlation between phylogenetic structure and function: examples from deep-sea Shewanella. FEMS Microbiol. Ecol. 35, 223-230 (2001).
25. Lanoil, B. D., Carlson, C. A., Giovannoni, S. J.: Bacterial chromosomal painting for in situ monitoring of cultured marine bacteria. Environ. Microbiol. 2, 654-665 (2000).
26. Leonardo, M. R., Moser, D. P., Barbieri, E., Branter, C. A., MacGregor, B. J., Paster, B. J., Stackebrandt, E., Nealson, K. H.: Shewanella pealeana sp. nov., a member of the microbial community associated with the accessory nidamental gland of the squid Loligo pealei. Int. J. Syst. Bacteriol. 49, 1341-1351 (1999).
27. MacDonell, M. T., Colwell, R. R.: Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst. Appl. Microbiol. 6, 171-182 (1985).
28. Makemson, J. C., Fulayfil, N. R., Landry, W., van Ert, L. M, Wimpee, C. F, Widder, E. A., Case, J. E: Shewanella woodyi sp. nov., an exclusively respiratory luminous bacterium isolated from the Alboran Sea. Int. J. Syst. Bacteriol. 47, 1034-1039 (1997).
29. Moule, A. L., Wilkinson, S. G.: Polar lipids, fatty acids, and isoprenoid quinines of Alteromonas putrefaciens (Shewanella putrefaciens). Syst. Appl. Microbiol. 9, 192-198 (1987).
30. Myers, C.R., Nealson, K.H.: Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240, 1319-1321 (1988).
31. Nogi, Y., Kato, C., Horikoshi, K: Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov. Arch. Microbiol. 170, 331-338 (1998).
32. Petrovskis, E. A., Vogel, T. M., Adriaens, P.: Effects of electron acceptors and donors on transformation of tetrachloromethane by Shewanella putrefaciens MR-1. FEMS Microbiol. Lett. 121, 357-364 (1994).
33. Pukall, R., Kramer, I., Rohde, M., Stackebrandt, E.: Microbial diversity of cultivatable bacteria associated with the North Sea bryozoan Flustra foliacea. Syst. Appl. Microbiol. 24, 623-33 (2001).
34. Ravenschlag, K., Sahm, K., Amann, R.: Quantitative molecular analysis of the microbial community in marine arctic sediments (Svalbard). Appl. Environ. Microbiol. 67, 387-395 (2001).
35. Russel, N. J., Nichols, D. S.: Polyunsaturated fatty acids in marine bacteria - a dogma rewritten. Microbiology. 145, 767-779 (1999).
36. Santos, J. A., Gonzalez, C. J., Lopez, T. M., Otero, A., Garcia-Lopez, M. L.: Haemolytic and elastolytic activities influenced by iron in Plesiomonas shigelloides. J. Food Prot. 62, 1475-1477 (1999).
37. Sasser, M.: MIDI Technical note 102. Newark, DE:Microbial ID Inc. (1997).
38. Sasaki, T., Ichida, N., Ichida, H., Takasuka, N., Kamiya, H., Endo, Y., Tanaka, M., Hayashi, T., Shimizu, Y.: Anti-tumor activity of aqueous extracts of marine animals. J. Pharmacobiodyn. 8, 969-974 (1985).
39. Sawabe, T., Sugimura, I., Ohtsuka, M., Nakano, K., Tajima, K., Ezura, Y., Christen, R.: Vibrio halioticoli sp. nov., a non-motile alginolytic marine bacterium isolated from the gut of the abalone Haliotis discus hannai. Int. J. Syst. Bacteriol. 48, 573-580 (1998a).
40. Sawabe, T., Makino, H., Tatsumi, M., Nakano, K., Tajima, K., Iqbal lqbal, M. M., Yumoto, I., Ezura, Y., Christen, R.: Psedo-alteromonas bacteriolytica sp. nov., a marine bacterium that is causative agent of red spot desease of Laminaria japonica. Int. J. Syst. Bacteriol. 48, 769-774 (1998b).
41. Semple, K. M., Westlake, D. W. S.: Characterization of iron reducing Alteromonas putrefaciens strains from oil field fluids. Can. J. Microbiol. 35, 925-931 (1987).
42. Smibert, R. M., Krieg, N. R.: Phenotypic characterization, p. 607-654. In: F. Gerhardt (ed.-in-chief), Methods for General and Molecular Bacteriology. American Society for Microbiology, Washington. D.C. (1994).
43. Staley, J. T., Konopka, A. Measurements of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitays. Annu. Rev. Microbiol. 39, 321-346 (1985).
44. Suzuki, M. T., Rappe, M. S., Haimberger, Z. W., Winfield, H., Adair, N., Strobel, J., Giovannoni, S. J.: Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample. Appl. Environ. Microbiol. 63, 983-989 (1997).
45. Svetashev, V. I., Vysotskii, M. V., Ivanova, E. P., Mikhailov, V. V.: Cellular fatty acid of Alteromonas species. Syst. Appl. Microbiol. 18, 37-43 (1995).
46. Venkateswaran, K., Moser, D. P., Dollhopf, M. E., Lies, D. P., Saffarini, D. A., MacGregor, B. J., Ringelberg, D. B., White, D. C., Nishijima, M., Sano, H., Burghardt, J., Stackebrandt, E., Nealson, K. H.: Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int. J. Syst. Bacteriol. 49, 705-724 (1999).
47. Ward-Rainey, N., Rainey, F.A., Stackebrandt, E.: A study of the bacterial flora associated with Holothuria atra. J. Experimental Mar. Biol. Ecol. 203, 11-26 (1996).
48. Weiner, R. M., Coyne, V. E., Brayton, P., Wesr, P., Raiken, S. F.: Alteromonas colwelliana sp. nov., an isolate from oyster habitats. Int. J. Syst. Bacteriol. 38, 240-244 (1988).