Exploring the Penicillium marneffei genome

Archives of Microbiology

Volumn 179, Issue 5, 2003, Pages 339-353

  Yuen, Kwok Yung ^a,b   Pascal, Géraldine ^c   Wong, Samson S Y ^b   Glaser, Philippe ^c   Woo, Patrick C Y ^b   Kunst, Frank ^c   Cai, James J ^b   Cheung, Elim Y L ^b   Médigue, Claudine ^d   Danchin, Antoine ^a,c  

^a HKU PASTEUR RESEARCH CENTRE   (Hong Kong)

^b UNIVERSITY OF HONG KONG   (Hong Kong)

^c INSTITUT PASTEUR   (France)

^d Genoscope   (France)

Author keywords

Genome; Genomic analysis; Penicillium marneffei

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; ANTIFUNGAL AGENT; FLUCONAZOLE; FUNGAL DNA; GENOMIC DNA; MULTIDRUG RESISTANCE PROTEIN; RIBOSOME DNA; RIBOSOME PROTEIN;

ACQUIRED IMMUNE DEFICIENCY SYNDROME; ARTICLE; CHROMOSOME; DNA FINGERPRINTING; FUNGAL GENETICS; FUNGUS; GENOME; MULTIDRUG RESISTANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPPORTUNISTIC INFECTION; PENICILLIUM; PENICILLIUM MARNEFFEI; PHYLOGENY; PRIORITY JOURNAL; RETICULOENDOTHELIAL SYSTEM; STRAIN DIFFERENCE; TELOMERE; UNINDEXED SEQUENCE;

ALGAE; FUNGI; PENICILLIUM; PENICILLIUM MARNEFFEI; PROKARYOTA;

EID: 0037615060     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-003-0533-8     Document Type: Article

References (49)

1. Alexander J, Satoskar AR, Russell DG (1999) Leishmania species: models of intracellular parasitism. J Cell Sci 112:2993-3002
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
3. Barzu, O, Danchin A (1994) Adenylyl cyclases: a heterogeneous class of ATP-utilizing enzymes. Prog Nucleic Acid Res Mol Biol 49:241-283
4. Borneman AR, Hynes MJ, Andrianopoulos A (2001) An STE12 homolog from the asexual, dimorphic fungus Penicillium marneffei complements the defect in sexual development of an Aspergillus nidulans steA mutant. Genetics 157:1003-1014
5. Cao L, Chan CM, Lee C, Wong SS, Yuen KY (1998) MPI encodes an abundant and highly antigenic cell wall mannoprotein in the pathogenic fungus Penicillium marneffei. Infect. Immun 66:966-973
6. Cao L, Chen DL, Lee C, Chan CM, Chan KM, Vanittanakom N, Tsang DN, Yuen KY (1998) Detection of specific antibodies to an antigenic mannoprotein for diagnosis of Penicillium marneffei penicilliosis. J Clin Microbiol 36:3028-3031
7. Cao L, Chan KM, Chen D, Vanittanakom N, Lee C, Chan CM, Sirisanthana T, Tsang DN, Yuen KY (1999) Detection of cell wall mannoprotein Mp1p in culture supernatants of Penicillium marneffei and in sera of penicilliosis patients. J Clin Microbiol 37:981-986
8. Chariyalertsak S, Vanittanakom P, Nelson KE, Sirisanthana T, Vanittanakom N (1996) Rhizomys sumatrensis and Cannomys badius, new natural animal hosts of Penicillium marneffei. J Med Vet Mycol 34:105-110
9. Chariyalertsak S, Sirisanthana T, Supparatpinyo K, Praparattanapan J, Nelson KE (1997) Case-control study of risk factors for Penicillium marneffei infection in human immunodeficiency virus-infected patients in northern Thailand. Clin Infect Dis 24:1080-1086
10. Chavez R, Fierro F, Gordillo F, Francisco Martin J, Eyzaguirre J (2001) Electrophoretic karyotype of the filamentous fungus Penicillium purpurogenum and chromosomal location of several xylanolytic genes. FEMS Microbiol Lett 205:379-383
11. Chim CS, Fong CY, Ma SK, Wong SS, Yuen KY (1998) Reactive hemophagocytic syndrome associated with Penicillium marneffei infection. Am J Med 104:196-197
12. Cimon, B, Carrere J, Chazalette JP, Vinatier JF, Chabasse D, Bouchara JP (1999) Chronic airway colonization by Penicillium emersonii in a patient with cystic fibrosis. Med Mycol 37:291-293
13. Cole ST, Eiglmeier K, Parkhill J, James KD, Thomson NR, Wheeler PR, Honore N, Garnier T, Churcher C, Harris D, Mungall D, Basham D, Brown D, Chillingworth T, Connor R, Davies RM, Devlin K, Duthoy S, Feltwell T, Fraser A, Hamlin N, Holroyd S, Hornsby T, Jagels K, Lacroix C, Maclean J, Moule S, Murphy L, Oliver K, Quail MA, Rajandream MA, Rutherford KM, Rutter S, Seeger K, Simon S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Taylor K, Whitehead S, Woodward JR, and Barrell BG (2001) Massive gene decay in the leprosy bacillus. Nature 409:1007-1011
14. Danchin A (1989) Homeotopic transformation and the origin of translation. Prog Biophys Mol Biol 54:81-86
15. Deng ZL, Connor DH (1985) Progressive disseminated penicilliosis caused by Penicillium marneffei. Report of eight cases and differentiation of the causative organism from Histoplasma capsulatum. Am J Clin Pathol 84:323-327
16. Espitia C, Laclette JP, Mondragon-Palomino M, Amador A, Campuzano J, Martens A, Singh M, Cicero R, Zhang Y, Moreno C (1999) The PE-PGRS glycine-rich proteins of Mycobacterium tuberculosis: a new family of fibronectin-binding proteins? Microbiology 145:3487-3495
17. Farber P, Geisen R (2000) Karyotype of Penicillium nalgiovense and assignment of the penicillin biosynthetic genes to chromosome IV. Int J Food Microbiol 58:59-63
18. Fierro F, Gutierrez S, Diez B, Martin JF (1993) Resolution of four large chromosomes in penicillin-producin filamentous fungi: the penicillin gene cluster is located on chromosome II (9.6 Mbp) in Penicillium notatum and chromosome I (10.4 Mbp) in Penicillium chrysogenum. Mol Gen Genet 241:573-578
19. Frangeul L, Nelson KE, Buchrieser C, Danchin A, Glaser P, Kunst F (1999) Cloning and assembly strategies in microbial genome projects. Microbiology 145:2625-2634
20. Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton G, Kelley JM (1995) The minimal gene complement of Mycoplasma genitalium. Science 270:397-403
21. Fraser CM, Norris SJ, Weinstock GM, White O, Sutton GG, Dodson R, Gwinn M, Hickey EK, Clayton R, Ketchum KA, Sodergren E, Hardham JM, McLeod MP, Salzberg S, Peterson J, Khalak H, Richardson D, Howell JK, Chidambaram M, Utterback T, McDonald L, Artiach P, Bowman C, Cotton MD, Venter JC (1998) Complete genome sequence of Treponema pallidum, the syphilis spirochete. Science 281:375-388
22. Glemet E, Codani JJ (1997) LASSAP, a LArge Scale Sequence comparison Package. Comput Appl Biosci 13:137-143
23. Hamilton AJ, Jeavons L, Youngchim S, Vanittanakom N, Hay RJ (1998) Sialic acid-dependent recognition of laminin by Penicillium marneffei conidia. Infect Immun 66:6024-6026
24. Hamilton AJ, Jeavons L, Youngchim S, Vanittanakom N (1999) Recognition of fibronectin by Penicillium marneffei conidia via a sialic acid-dependent process and its relationship to the interaction between conidia and laminin. Infect Immun 67:5200-5205
25. Himmelreich R., Hilbert H, Plagens H, Pirkl E, Li BC, Herrmann R (1996) Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res 24:4420-4449
26. Imwidthaya P, Thipsuvan K, Chaiprasert A, Danchaivijitra S, Sutthent R, Jearanaisilavong J (2001) Penicillium marneffei: types and drug susceptibility. Mycopathologia 149:109-115
27. Kao LR, Peterson J, Ji R, Bender L, Bender A (1996) Interactions between the ankyrin repeat-containing protein Akr1p and the pheromone response pathway in Saccharomyces cerevisiae. Mol Cell Biol 16:168-178
28. Kappe R., Fauser C, Okeke CN, Maiwald M (1996) Universal fungus-specific primer systems and group-specific hybridization oligonucleotides for 18S rDNA. Mycoses 39:25-30
29. Kayser T, Schulz G (1991) Electrophoretic karyotype of cellulolytic Penicillium janthinellum strains. Curr Genet 20:289-291
30. Kondrashov AS (1994) Muller' ratchet under epistatic selection. Genetics 136:1469-1473
31. Kwan EY, Lau YL, Yuen KY, Jones BM, Low LC (1997) Penicillium marneffei infection in a non-HIV infected child. J Paediatr Child Health 33:267-271
32. Lo CY, Chan DT, Yuen KY, Li FK, Cheng KP (1995) Penicillium marneffei infection in a patient with SLE. Lupus 4:229-231
33. LoBuglio KF, Taylor JW (1995) Phylogeny and PCR identification of the human pathogenic fungus Penicillium marneffei. J Clin Microbiol 33:85-89
34. Pryciak PM, Hartwell LH (1996) AKR1 encodes a candidate effector of the G βγ complex in the Saccharomyces cerevisiae pheromone response pathway and contributes to control of both cell shape and signal transduction. Mol Cell Biol 16:2614-2626
35. Stachelhaus T, Marahiel MA (1995) Modular structure of peptide synthetases revealed by dissection of the multifunctional enzyme GrsA. J Biol Chem 270:6163-6169
36. Stoesser G, Baker W, Van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Lombard V, Lopez R, Parkinson H, Redaschi N, Sterk P, Stoehr P, Tuli MA (2001) The EMBL nucleotide sequence database. Nucleic Acids Res 29:17-21
37. Supparatpinyo K, Khamwan C, Baosoung V, Nelson KE, Sirisanthana T (1994) Disseminated Penicillium marneffei infection in southeast Asia. Lancet 344:110-113
38. Udagawa S, Furuya K, Horie Y (1973) Mycological reports from New Guinea and the Solomon Islands (compiled by Y. Kobayasi). 19. Notes on some ascomycetous microfungi from soil. Bull. Natl Sci Mus Tokyo 16:503-520
39. Vanittanakom N, Merz WG, Sittisombut N, Khamwan C, Nelson KE, Sirisanthana T (1998) Specific identification of Penicillium marneffei by a polymerase chain reaction/hybridization technique. Med Mycol 36:169-175
40. Verweij PE, Meis JF, Van den Hurk P, Zoll J, Samson RA, Melchers WJ (1995) Phylogenetic relationships of five species of Aspergillus and related taxa as deduced by comparison of sequences of small subunit ribosomal RNA. J Med Vet Mycol 33:185-190
41. Wong KH, Lee SS (1998) Comparing the first and second hundred AIDS cases in Hong Kong. Singapore Med J 39:236-240
42. Wong LP, Woo PC, Wu, AY, Yuen KY (2002) DNA immunization using a secreted cell wall antigen Mp1p is protective against Penicillium marneffei infection. Vaccine 20:2878-2886
43. Wong SS, Siau H, Yuen KY (1999) Penicilliosis marneffei - West meets East. J Med Microbiol 48:973-975
44. Wong SS, Ho TY, Ngan AH, Woo PC, Que TL, Yuen KY (2001a) Biotyping of Penicillium marneffei reveals concentration-dependent growth inhibition by galactose. J Clin Microbiol 39:1416-1421
45. Wong SS, Wong KH, Hui WT, Lee SS, Lo JY, Cao L, Yuen KY (2001b) Differences in clinical and laboratory diagnostic characteristics of penicilliosis marneffei in human immunodeficiency virus (HIV)- and non-HIV-infected patients. J Clin Microbiol 39:4535-4540
46. Wong SS, Woo PC, Yuen KY (2001c) Candida tropicalis and Penicillium marneffei mixed fungaemia in a patient with Waldenstrom's macroglobulinaemia. Eur J Clin Microbiol Infect Dis 20:132-135
47. Wu S, Guo N, Yin Z, Chai J. (1996) Characterization of pathogenic fungi genomes using pulsed field gel electrophoresis. Chin Med Sci J 11:188-190
48. Young C, Itoh Y, Johnson R, Garthwaie I, Miles CO, Munday-Finch SC, Scott B (1998) Paxilline-negative mutants of Penicillium paxilli generated by heterologous and homologous plasmid integration. Curr Genet 33:368-377
49. Yuen KY, Wong SS, Tsang DN, Chau PY (1994) Serodiagnosis of Penicillium marneffei infection. Lancet 344:444-445