Structural assignments and dynamics of the a substates of MbCo: Spectrally resolved vibrational echo experiments and molecular dynamics simulations

Journal of Physical Chemistry B

Volumn 107, Issue 1, 2003, Pages 4-7

  Merchant, Kusai A ^a   Noid, W G ^b   Thompson, David E ^a,c   Akiyama, Ryo ^b   Loring, Roger F ^b   Fayer, M D ^a  

^a STANFORD UNIVERSITY   (United States)

^b Department of Obstetrics Gynecology   (United States)

^c LAWRENCE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON MONOXIDE; COMPUTER SIMULATION; CONFORMATIONS; MOLECULAR DYNAMICS; MOLECULAR VIBRATIONS; PROTONS; SPECTROSCOPY; STRUCTURE (COMPOSITION);

VIBRATIONAL ECHO EXPERIMENTS;

PROTEINS;

EID: 0037426830     PISSN: 10895647     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp026793o     Document Type: Article

References (36)

1. Kuriyan, J. W.; Karplus, M.; Petsko, G. A. J. Mol. Biol. 1986, 292, 133.
2. Kachalova, G. S.; Popov, A. N.; Bartunik, H. D. Science 1999, 284, 473.
3. Vojtechovsky, J.; Chu, K.; Berendzen, J.; Sweet, R. M.; Schlichting, I. Biophys. J. 1999, 77, 2153.
4. Cheng, X.; Schoenborn, B. P. J. Mol. Biol. 1991, 220, 381.
5. Theriault,Y.; Pochapsky,T.C.; Dalvit,C.; Chin,M.L.; Sligar,S.G.; Wright,P.E.J. Biomol. NMR 1994, 4, 491.
6. Ansari,A.; Beredzen,J.; Braunstein,D.; Cowen,B.R.; Frauenfelder,H.; Hong,M.K.; Iben,I.E.T.; Johnson, J. B.; Ormos, P.; Sauke, T.; Schroll, R.; Schulte, A.; Steinback, P. J.; Vittitow, J.; Young, R. D. Biophys. Chem. 1987, 26, 337.
7. Müller, J. D.; McMahon, B. H.; Chen, E. Y. T.; Sligar, S. G.; Nienhaus, G. U. Biophys. J. 1999, 77, 1036.
8. Merchant, K. A.; Thompson, D. E.; Xu, Q.-H.; Williams, R. B.; Loring, R. F.; Fayer, M. D. Biophys. J. 2002, 82, 3277.
9. Phillips, G. N., Jr.; Teodoro, M. L.; Li, T.; Smith, B.; Olson, J. S. J. Phys. Chem. B 1999, 103, 8817.
10. Rovira, C.; Schulze, B.; Eichinger, M.; Evanseck, J. D.; Parrinello, M. Biophys. J. 2001, 81, 435.
11. Schulze, B. G.; Evanseck, J. D. J. Am. Chem. Soc. 1999, 121, 6444.
12. (12) Yang, F.; Phillips, G. N., Jr. J. Mol. Biol. 1996, 256, 762.
13. Li, T. S.; Quillin, M. L.; Phillips, G. N., Jr.; Olson, J. S. Biochemistry 1994, 33, 1433.
14. Shimada, H.; Canghey, W. S. J. Biol. Chem. 1982, 257, 1893.
15. Zimdars, D.; Tokmakoff, A.; Chen, S.; Greenfield, S. R.; Fayer, M. D.; Smith, T. I.; Schwettman, H. A. Phys. Rev. Lett. 1993, 70, 2718.
16. Rector, K. D.; Engholm, J. R.; Rella, C. W.; Hill, J. R.; Dlott, D. D.; Fayer, M. D. J. Phys. Chem. A. 1999, 103, 2381.
17. Hamm, P.; Lim, M.; Hochstrasser, R. M. Phys. Rev. Lett. 1998, 81, 5326.
18. Zanni, M. T.; Asplund, M. C.; Hochstrasser, R. M. J. Chem. Phys. 2001, 114, 4579.
19. Merchant, K. A.; Thompson, D. E.; Fayer, M. D. Phys. Rev. Lett. 2001, 86, 3899.
20. Golonzka, O.; Khalil, M.; Demirdoven, N.; Tokmakoff, A. Phys. Rev. Lett. 2001, 86, 2154.
21. Fayer, M. D. Annu. Rev. Phys. Chem. 2001, 52, 315.
22. Hamm, P.; Hochstrasser, R. M. Structure and Dynamics of Proteins and Peptides: Femtosecond Two-Dimensional Infrared Spectroscopy. In Ultrafast Infrared and Raman Spectroscopy; Fayer, M. D., Ed.; Marcel Dekker: New York, 2001; Vol. 26, p 273.
23. Elber, R.; Roitberg, A.; Simmerling, C.; Goldstein, R.; Li, H.; Verkhivker, G.; Keaser, C.; Zhang, J.; Ulitsky, A. Comput. Phys. Commun. 1994, 91, 159.
24. Meller, J.; Elber, R. Biophys. J. 1998, 74, 789.
25. Weiner, S. J.; Kollman, P. A.; Case, D. A.; Singh, U. C.; Ghio, C.; Alagona, G.; Profeta, S.; Weiner, P. J. Am. Chem. Soc. 1984, 106, 765.
26. Jorgensen, W. L.; Tirado-Rives, J. J. Am. Chem. Soc. 1988, 110, 1666.
27. Williams,R.B.; Loring,R.F.; Fayer,M.D.J. Phys. Chem. B 2001, 105, 4068.
28. Mukamel,S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: New York, 1995.
29. Berg, M.; Walsh, C. A.; Narasimhan, L. R.; Littau, K. A.; Fayer, M. D. J. Chem. Phys. 1988, 88, 1564.
30. Berg, M. A.; Rector, K. D.; Fayer, M. D. J. Chem. Phys. 2000, 113, 3233.
31. Park, E. S.; Andrews, S. S.; Hu, R. B.; Boxer, S. G. J. Phys. Chem. B 1999, 103, 9813.
32. Bottcher, C. J. F. Theory of Electric Polarization; Elsevier: Amsterdam, 1973; Vol. I.
33. Makinen, M. W.; Houtchens, R. A.; Caughey, W. S. Proc. Natl. Acad. Sci. U.S.A. 1979, 76, 6042.
34. Johnson, J. B.; Lamb, D. C.; Frauenfelder, H.; Müller, J. D.; McMahon, B.; Nienhaus, G. U.; Young, R. D. Biophys. J. 1996, 71, 1563.
35. Scott, E. E.; Paster, E. V.; Olson, J. S. J. Biol. Chem. 2000, 275, 27129.
36. Hargrove, M. S.; Olson, J. S. Biochemistry 1996, 35, 11310.