Crystal structure of the (R)-specific enoyl-CoA hydratase from Aeromonas caviae involved in polyhydroxyalkanoate biosynthesis

Journal of Biological Chemistry

Volumn 278, Issue 1, 2003, Pages 617-624

  Hisano, Tamao ^a,c   Tsuge, Takeharu ^a,d   Fukui, Toshiaki ^a,b   Iwata, Tadahisa ^a   Miki, Kunio ^b,c   Doi, Yoshiharu ^a,d  

^a RIKEN   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c RIKEN Harima Institute/SPring 8 ^*  (Japan)

^d TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOSYNTHESIS; CATALYSIS; CRYSTAL STRUCTURE; DIMERS; MONOMERS;

SUBSTRATE-BINDING TUNNELS;

ENZYMES;

ENOYL COENZYME A HYDRATASE; POLYHYDROXYALKANOIC ACID;

AEROMONAS PUNCTATA; ARTICLE; BINDING AFFINITY; BIOSYNTHESIS; CATALYSIS; CRYSTAL STRUCTURE; ENZYME STRUCTURE; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ENGINEERING; PROTON TRANSPORT;

AEROMONAS; AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CIRCULAR DICHROISM; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ENOYL-COA HYDRATASE; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; MUTAGENESIS, SITE-DIRECTED; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT;

AEROMONAS; AEROMONAS PUNCTATA; BACTERIA (MICROORGANISMS); CANIS FAMILIARIS;

EID: 0037414810     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M205484200     Document Type: Article

References (49)

1. Waterson, R. M., and Hil, R. L. (1972) J. Biol. Chem. 247, 5258-5265
2. Minami-Ishii, N., Taketani, S., Osumi, T., and Hashimoto, T. (1989) Eur. J. Biochem. 185, 73-78
3. Wu, W.-J., Anderson, V. E., Raleigh, D. P., and Tonge, P. J. (1997) Biochemistry 36, 2211-2220
4. Kiema, T.-R., Engel, C. K., Schmitz, W., Filppula, S. A., Wierenga, R. K., and Hiltunen, J. K. (1999) Biochemistry 38, 2991-2999
5. Hofstein, H. A., Feng, Y., Anderson, V. E., and Tonge, P. J. (1999) Biochemistry 38, 9508-9516
6. Engel, C. K., Mathieu, M., Zeelen, J. P., Hiltunen, J. K., and Wierenga, R. K. (1996) EMBO J. 15, 5135-5145
7. Engel, C. K., Kiema, T. R., Hiltunen, J. K., and Wierenga, R. K. (1998) J. Mol. Biol. 275, 847-859
8. Bahnson, B. J., Anderson, V. E., and Petsko, G. (2002) Biochemistry 41, 2621-2629
9. Qin, Y.-M., Haapalainen, A. M., Conry, D., Cuebas, D. A., Hiltunen, J. K., and Novikov, D. K. (1997) Biochem. J. 328, 377-382
10. Dieuaide-Noubhani, M., Asselberghs, S., Mannaerts, G. P., and Veldhoven, P. P. (1997) Biochem. J. 325, 367-373
11. Jiang, L. L., Kurosawa, T., Sato, M., Suzuki, Y., and Hashimoto, T. (1997) J. Biochem. (Tokyo) 121, 506-513
12. Kurosawa, T., Sato, M., Nakano, H., Fujiwara, M., Murai, T., Yoshimura, T., and Hashimoto, T. (2001) Steroids 66, 107-114
13. Hiltunen, J. K., and Qin, Y.-M. (2000) Biochim. Biophys. Acta 1484, 117-118
14. Hiltunen, J. K., Wenzel, B., Beyer, A., Erdmann, R., Fosså, A., and Kunau, Q.-H. (1992) J. Biol. Chem. 267, 6646-6653
15. Qin, Y.-M., Haapalainen, A. M., Kilpeläinen, S. H., Marttila, M. S., Koski, M. K., Glumoff, T., Novikov, D. K., and Hiltunen, J. K. (2000) J. Biol. Chem. 275, 4965-4972
16. Fukui, T., and Doi, Y. (1997) J. Bacteriol. 179, 4821-4830
17. Fukui, T., Shiomi, N., and Doi, Y. (1998) J. Bacteriol. 180, 667-673
18. Tsuge, T., Fukui, T., Matsusaki, H., Taguchi, S., Kobayashi, G., Ishizaki, A., and Doi, Y. (2000) FEMS Microbiol. Lett. 184, 193-198
19. Reiser, E. E., Mitsky, T. A., and Gruys, K. J. (2000) Appl. Microbiol. Biotechnol. 53, 209-218
20. Mothes, G., and Babel, W. (1995) Can. J. Microbiol. 41, 68-72
21. Fukui, T., Kichise, T., Iwata, T., and Doi, Y. (2001) Biomacromolecules 2, 148-153
22. Doi, Y., Kitamura, S., and Abe, H. (1995) Macromolecules 28, 4822-4828
23. Slater, S., Mitsky, T. A., Houmiel, K. L., Hao, M., Reiser, S. E., Taylor, N. B., Tran, M., Valentin, H. E., Rodriguez, D. J., Stone, D. A., Padgette, S. R., Kishore, G., and Gruys, K. J. (1999) Nat. Biotechnol. 17, 1011-1016
24. Fukui, T., Yokomizo, S., Kobayashi, G., and Doi, Y. (1999) FEMS Microbiol. Lett. 170, 69-75
25. Kichise, T., Fukui, T., Yoshida, Y., and Doi, Y. (1999) Int. J. Biol. Macromol. 25, 69-77
26. Madison, L. L., and Huisman, G. W. (1999) Microbiol. Mol. Biol. Rev. 63, 21-53
27. Doi, Y. (1990) Microbial Polyesters, VCH Publishers, Inc., NY
28. van Grunsven, E. G., Mooijer, P. A. W., Aubourg, P., and Wanders, R. J. A. (1999) Hum. Mol. Genet. 8, 1509-1516
29. van Grunsven, E. G., van Berkel, E., Mooijer, P. A. W., Watkins, P. A., Moser, H. W., Suzuki, Y., Jiang, L. L., Hashimoto, T, Hoefler, G., Adamski, J., and Wanders, R. J. A. (1999) Am. J. Hum. Genet. 64, 99-107
30. Itoh, M., Suzuki, Y., Akaboshi, S., Zhang, Z., Miyabara, S., and Takashima, S. (2000) Brain Res. 858, 40-47
31. Hisano, T., Fukui, T., Iwata, T., and Doi, Y. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 145-147
32. Adachi, S., Oguchi, T., and Ueki, T. (1996) SPring-8 Annual Report 1996, pp. 239-240, JASRI, Harima, Japan
33. Leslie, A. G. W. (1992) Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography, No. 26, Daresbury Laboratory, Warrington, UK
34. Furey, W., and Swaminathan, S. (1997) Methods Enzymol. 277, 590-620
35. McRee, D. E. (1999) Practical Protein Crystallography, 2nd Ed., Academic Press, CA
36. Jones, T. A. (1985) Methods Enzymol. 115, 15-171
37. Tong, L. J. (1993) J. Appl. Crystallogr. 26, 748-751
38. Brünger, A. T. (1992) X-PLOR Manual, Version 3.1, Yale University Press, New Haven, CT
39. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, N., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
40. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
41. Imai, Y., Matsushima, Y., Sugimura, T., and Terada, M. (1991) Nucleic Acids Res. 19, 2785
42. Leesong, M., Henderson, B. S., Gillig, J. R., Schwab, J. M., and Smith, J. L. (1996) Structure 4, 253-264
43. Benning, M., Wesenber, G., Lius, R., Taylor, K. L., Dunaway-Mariano, D., and Holden, H. M. (1998) J. Biol. Chem. 273, 33572-33579
44. Li, J., Derewenda, U., Dauter, Z., Smith, S., and Derewenda, Z. S. (2000) Nat. Struct. Biol. 7, 555-559
45. Bateman, A., Birney, E., Durbin, R., Eddy, S. R., Finn, R. D., and Sonnhammer, E. L. L. (1999) Nucleic Acids Res. 27, 260-262
46. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
47. Esnouf, R. M. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 938-940
48. Merrit, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
49. Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, D., Rapp, B. A., and Wheeler, D. L. (2002) Nucleic Acids Res. 30, 17-20