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Volumn 56, Issue 5, 2003, Pages 564-572

African origin of polyomavirus JC and implications for prehistoric human migrations

Author keywords

Human migration; JC polyomavirus; Phylogenetic trees; Population history; Principal coordinates analysis

Indexed keywords

AFRICA; ARTICLE; EUROPE; GEOGRAPHIC DISTRIBUTION; JC VIRUS; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; POLYOMA VIRUS; SEQUENCE ANALYSIS;

EID: 0037403373     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-002-2425-y     Document Type: Article
Times cited : (39)

References (40)
  • 2
    • 0031446337 scopus 로고    scopus 로고
    • Asian genotypes of JC virus in Native Americans and in a Pacific Island population: Markers of viral evolution and human migration
    • Agostini HT, Yanagihara R, Davis V, Ryschkewitsch CF, Stoner GL (1997b) Asian genotypes of JC virus in Native Americans and in a Pacific Island population: Markers of viral evolution and human migration. Proc Natl Acad Sci USA 94:14542-14546
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 14542-14546
    • Agostini, H.T.1    Yanagihara, R.2    Davis, V.3    Ryschkewitsch, C.F.4    Stoner, G.L.5
  • 5
    • 0034795891 scopus 로고    scopus 로고
    • Potential transmission of human polyomavirus through the gastrointestinal tract after exposure to virions or viral DNA
    • Bofill-Mas S, Formiga-Cruz M, Clemente-Casares P, Calafell F, Girones R (2001) Potential transmission of human polyomavirus through the gastrointestinal tract after exposure to virions or viral DNA. J Virol 75:10290-10299
    • (2001) J Virol , vol.75 , pp. 10290-10299
    • Bofill-Mas, S.1    Formiga-Cruz, M.2    Clemente-Casares, P.3    Calafell, F.4    Girones, R.5
  • 7
    • 0023163377 scopus 로고
    • Mitochondrial DNA and human evolution
    • Cann RM, Stoneking M, Wilson A (1987) Mitochondrial DNA and human evolution. Nature 325:31-36
    • (1987) Nature , vol.325 , pp. 31-36
    • Cann, R.M.1    Stoneking, M.2    Wilson, A.3
  • 8
    • 0012970081 scopus 로고
    • Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues
    • Chesters PM, Heritage J, McCance DJ (1983) Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues. J Infect Dis 142:1-8
    • (1983) J Infect Dis , vol.142 , pp. 1-8
    • Chesters, P.M.1    Heritage, J.2    McCance, D.J.3
  • 9
    • 0032153229 scopus 로고    scopus 로고
    • Molecular epidemiology of human polyomavirus JC in the Biaka pygmyes and Bantu of Central Africa
    • Chima SC, Ryschkewitsch CF, Stoner GL (1998) Molecular epidemiology of human polyomavirus JC in the Biaka pygmyes and Bantu of Central Africa. Mem Inst Oswaldo Cruz 93:615-623
    • (1998) Mem Inst Oswaldo Cruz , vol.93 , pp. 615-623
    • Chima, S.C.1    Ryschkewitsch, C.F.2    Stoner, G.L.3
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 11
    • 0003437299 scopus 로고
    • Distributed by the author, Department of Genetics, University of Washington, Seattle
    • Felsenstein J (1993) PHYLIP: Phylogeny inference package version 3.5. Distributed by the author, Department of Genetics, University of Washington, Seattle
    • (1993) PHYLIP: Phylogeny Inference Package Version 3.5
    • Felsenstein, J.1
  • 17
    • 0034052340 scopus 로고    scopus 로고
    • Evolution of polyomavirus JC
    • Hatwell JN, Sharp PM (2000) Evolution of polyomavirus JC. J Gen Virol 81:1191-1200
    • (2000) J Gen Virol , vol.81 , pp. 1191-1200
    • Hatwell, J.N.1    Sharp, P.M.2
  • 18
    • 0026547387 scopus 로고
    • Sequence ordination: A multivariate analysis approach to analysing large sequence data sets
    • Higgins DG (1992) Sequence ordination: A multivariate analysis approach to analysing large sequence data sets. Comput Appl Biosci 8:15-22
    • (1992) Comput Appl Biosci , vol.8 , pp. 15-22
    • Higgins, D.G.1
  • 19
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192
    • (1993) Syst Biol , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 20
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Ihaka R, Gentleman R (1996) R: a language for data analysis and graphics. J Comput Graph Stat 5:299-314
    • (1996) J Comput Graph Stat , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 0025353669 scopus 로고
    • High incidence of urinary JC virus excretion in nonimmunosup-pressed older patients
    • Kitamura T, Aso Y, Kunyoshi N, Hara K, Yogo Y (1990) High incidence of urinary JC virus excretion in nonimmunosup-pressed older patients. J Infect Dis 161:1128-1133
    • (1990) J Infect Dis , vol.161 , pp. 1128-1133
    • Kitamura, T.1    Aso, Y.2    Kunyoshi, N.3    Hara, K.4    Yogo, Y.5
  • 25
    • 0028997573 scopus 로고
    • Parent-to-child transmission is relatively common in the spread of the human polyomavirus JC
    • Kunitake T, Kitamura T, Guo J, Taguchi F, Kawabe K, Yogo Y (1995) Parent-to-child transmission is relatively common in the spread of the human polyomavirus JC. J Clin Microbiol 33:1448-1451
    • (1995) J Clin Microbiol , vol.33 , pp. 1448-1451
    • Kunitake, T.1    Kitamura, T.2    Guo, J.3    Taguchi, F.4    Kawabe, K.5    Yogo, Y.6
  • 26
    • 0026500952 scopus 로고
    • Pathogenesis and molecular biology of progressive multifocal leukoencephalopathy, the JC virus-induced demyelinating disease of the human brain
    • Major EO, Amemiya K, Tornatore CS, Houff SA, Berger JR (1992) Pathogenesis and molecular biology of progressive multifocal leukoencephalopathy, the JC virus-induced demyelinating disease of the human brain. Clin Microbiol Rev 5:49-73
    • (1992) Clin Microbiol Rev , vol.5 , pp. 49-73
    • Major, E.O.1    Amemiya, K.2    Tornatore, C.S.3    Houff, S.A.4    Berger, J.R.5
  • 27
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page RDM (1996) TREEVIEW: An application to display phylogenetic trees on personal computers, Comput Appl Biosci 12:357-358
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 28
    • 0034944957 scopus 로고    scopus 로고
    • Origin and evolution of GBV-C/Hepatitis G virus and relationships with ancient human migrations
    • Pavesi A (2001) Origin and evolution of GBV-C/Hepatitis G virus and relationships with ancient human migrations. J Mol Evol 53:104-413
    • (2001) J Mol Evol , vol.53 , pp. 104-413
    • Pavesi, A.1
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0032808276 scopus 로고    scopus 로고
    • A view of modem human origins from Y chromosome microsatellite variation
    • Seielstad M, Bekele E, Ibrahim M, Touré A, Traoré M (1999) A view of modem human origins from Y chromosome microsatellite variation. Genome Res 9:558-567
    • (1999) Genome Res , vol.9 , pp. 558-567
    • Seielstad, M.1    Bekele, E.2    Ibrahim, M.3    Touré, A.4    Traoré, M.5
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 0031297695 scopus 로고    scopus 로고
    • General time-reversible distances with unequal rates across sites: Mixing gamma and inverse Gaussian distributions with invariant sites
    • Waddell PJ, Steel MA (1997) General time-reversible distances with unequal rates across sites: mixing gamma and inverse Gaussian distributions with invariant sites. Mol Phylogenet Evol 8:398-414
    • (1997) Mol Phylogenet Evol , vol.8 , pp. 398-414
    • Waddell, P.J.1    Steel, M.A.2
  • 39
    • 0001509352 scopus 로고
    • The biology and molecular biology of JC virus
    • Salzman NP (ed). Plenum Press, New York
    • Walker DL, Frisque RJ (1986) The biology and molecular biology of JC virus. In: Salzman NP (ed) The papovaviridae. Plenum Press, New York, Vol 1, pp 327-377
    • (1986) The Papovaviridae , vol.1 , pp. 327-377
    • Walker, D.L.1    Frisque, R.J.2
  • 40
    • 0001909391 scopus 로고    scopus 로고
    • Do human and JC virus genes show evidence of host-parasite codemography?
    • Wooding S (2001) Do human and JC virus genes show evidence of host-parasite codemography? Infect Genet Evol 1:3-12
    • (2001) Infect Genet Evol , vol.1 , pp. 3-12
    • Wooding, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.