Five complete genomes of JC virus type 3 from Africans and African Americans

Archives of Virology

Volumn 142, Issue 4, 1997, Pages 637-655

  Agostini, H T ^a   Ryschkewitsch, C F ^a   Brubaker, G R ^b   Shao, J ^c   Stoner, G L ^a,d  

^a NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE   (United States)

^b Shirati Hospital   (Tanzania)

^c KILIMANJARO CHRISTIAN MEDICAL CENTRE   (Tanzania)

^d NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA VIRUSES; HUMAN IMMUNODEFICIENCY VIRUS 1; JC VIRUS; MIRIDAE;

EID: 0030942563     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050108     Document Type: Article

References (43)

1. Agostini HT, Brubaker GR, Shao J, Levin A, Ryschkewitsch CF, Blauner WA, Stoner GL (1995) BK virus and a new type of JC virus excreted by HIV-1 positive patients in rural Tanzania. Arch Virol 140: 1 919-1 934
2. Agostini HT, Ryschkewitsch CF, Singer EJ, Stoner GL (1996) Co-infection with two JC virus genotypes in brain, cerebrospinal fluid or urinary tract detected by direct cycle sequencing of PCR products. J Neurovirol 2: 259-267
3. Agostini HT, Ryschkewitsch CF, Stoner GL (1996) Genotype profile of human polyomavirus JC excreted in urine of immunocompetent individuals. J Clin Microbiol 34: 159-164
4. Agostini HT, Stoner GL (1995) Amplification of the complete polyomavirus JC genome from brain, cerebrospinal fluid and urine using pre-PCR restriction enzyme digestion. J Neurovirol 1: 316-320
5. Appelbaum PC, Ross SM, Dhupelia I, Naeye RL (1979) The effect of diet supplementation and addition of zinc in vitro on the growth-supporting property of amniotic fluid in African women. Am J Obstet Gynecol 135: 82-84
6. Åström KE, Mancall EL, Richardson EP Jr (1958) Progressive multifocal leukoencephalopathy: a hitherto unrecognized complication of chronic lymphocytic leukemia and Hodgkin's disease. Brain 81: 93-111
7. Ault GS, Stoner GL (1992) Two major types of JC virus defined in progressive multifocal leukoencephalopathy brain by early and late coding region DNA sequences. J Gen Virol 73: 2 669-2 678
8. Ault GS, Stoner GL (1993) Human polyomavirus JC promoter/enhancer rearrangement patterns from progressive multifocal leukoencephalopathy brain are unique derivatives of a single archetypal structure. J Gen Virol 74: 1 499-1 507
9. Berger JR, Concha M (1995) Progressive multifocal leukoencephalopathy: the evolution of a disease once considered rare. J Neurovirol 1: 5-18
10. Delmas V, Bastien C, Scherneck S, Feunteun J (1985) A new member of the polyomavirus family: the hamster papovavirus; complete nucleotide sequence and transformation properties. EMBO J 4: 1 279-1 286
11. Dyson N, Bernards R, Friend SH, Gooding LR, Hassell JA, Major EO, Pipas JM, Vandyke T, Harlow E (1990) Large T antigens of many polyomaviruses are able to form complexes with the retinoblastoma protein. J Virol 64: 1 353-1 356
12. Fanning E, Knippers R (1992) Structure and function of simian virus 40 large tumor antigen. Annu Rev Biochem 61: 55-85
13. Fiers W, Contreras R, Haegeman G, Rogiers R, van de Voorde A, van Heyverswyn H, van Herreweghe J, Volckaert G, Ysebaert M (1978) Complete nucleotide sequence of SV40 DNA. Nature 273: 113-120
14. Frisque RJ, Bream GL, Cannella MT (1984) Human polyomavirus JC virus genome. J Virol 51: 458-469
15. Frisque RJ, White FA, III (1992) The molecular biology of JC virus, causative agent of progressive multifocal leukoencephalopathy. In: Roos RP (ed) Neurovirology - pathogenesis of viral CNS infections. Human Press, Totowa, pp 25-158
16. Greenberg AE, Lucas S, Tossou O, Coulibaly IM, Coulibaly D, Kassim S, Ackah A, De Cock KM (1995) Autopsy-proven causes of death in HIV-infected patients treated for tuberculosis in Abidjan, Cote d'Ivoire. AIDS 9: 1 251-1 254
17. Griffin BE, Soeda E, Barrell BG, Staden R (1981) Appendix B: sequence and analysis of polyoma virus DNA. In: Tooze J (ed) DNA tumor viruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, pp 843-910
18. Harrison SC (1991) A structural taxonomy of DNA-binding domains. Nature 353: 715-719
19. Iida T, Kitamura T, Guo J, Taguchi F, Aso Y, Nagashima K, Yogo Y (1993) Origin of JC polyomavirus variants associated with progressive multifocal leukoencephalopathy. Proc Natl Acad Sci USA 90: 5 062-5 065
20. Loeber G, Dörries K (1988) DNA rearrangements in organ-specific variants of polyomavirus JC strain GS. J Virol 62: 1 730-1 735
21. Major EO, Amemiya K, Tornatore CS, Houff SA, Berger JR (1992) Pathogenesis and molecular biology of progressive multifocal leukoencephalopathy, the JC virus-induced demyelinating disease of the human brain. Clin Microbiol Rev 5: 49-73
22. Markowitz RB, Thompson HC, Mueller JF, Cohen JA, Dynan WS (1993) Incidence of BK virus and JC virus viruria in human immunodeficiency virus-infected and uninfected subjects. J Infect Dis 167: 13-20
23. Mayer M, Dörries K (1991) Nucleotide sequence and genome organization of the murine polyomavirus, Kilham strain. Virology 181: 469-480
24. Mount SM (1982) A catalogue of splice junction sequences. Nucleic Acids Res 10: 459-472
25. Padgett BL, Walker DL, ZuRhein GM, Eckroade RJ, Dessel BH (1971) Cultivation of papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet 1: 1 257-1 260
26. Pawlita M, Clad A, zur Hausen H (1985) Complete DNA sequence of lymphotropic papovavirus: prototype of new species of the polyomavirus genus. Virology 143: 196-211
27. Raj GV, Khalili K (1995) Transcriptional regulation - lessons from the human neurotropic polyomavirus, JCV. Virology 213: 283-291
28. Rott O, Kroeger M, Mueller H, Hobom G (1988) The genome of budgerigar fledgling disease virus, an avian polyomavirus. Virology 165: 74-86
29. Schuurman R, Sol C, van der Noordaa J (1990) The complete nucleotide sequence of bovine polyomavirus. J Gen Virol 71: 1 723-1 735
30. Seif I, Khoury G, Dhar R (1979) The genome of human papovavirus BKV. Cell 18: 963-977
31. Sharp PA (1994) Split genes and RNA splicing. Cell 77: 805-815
32. Silverman L, Rubinstein LJ (1965) Electron microscopic observations on a case of progressive multifocal leukoencephalopathy. Acta Neuropathol (Berl) 5: 215-224
33. Stoner GL, Agostini HT, Ryschkewitsch CF (1996) A comparison of JC virus genotype profiles in PML brains and controls urines. Neurol 46: A316 (Abstract)
34. Stoner GL, Ryschkewitsch CF (1995) Capsid protein VP1 deletions in JC virus from two AIDS patients with progressive multifocal leukoencephalopathy. J Neurovirol 1: 189-194
35. Sundsfjord A, Flaegstad T, Flo R, Spein AR, Pedersen M, Permin H, Julsrud J, Traavik T (1994) BK and JC viruses in human immunodeficiency virus type 1-infected persons: prevalence, excretion, viremia, and viral regulatory region. J Infect Dis 169: 485-490
36. Swenson JJ, Trowbridge PW, Frisque RJ (1996) Replication activity of JC virus large T antigen phosphorylation and zinc finger domain mutants. J Neurovirol 2: 78-86
37. Trowbridge PW, Frisque RJ (1995) Identification of three new JC virus proteins generated by alternative splicing of the early viral mRNA. J Neurovirol 1: 195-206
38. Walker DL (1985) Progressive multifocal leukoencephalopathy. In: Vinken PJ, Bruyn GW, Klawans HL, Koetsier JC (eds) Handbook of clinical neurology, vol 47: demyelinating diseases. Elsevier, Amsterdam, pp 503-524
39. Walker DL, Frisque RJ (1986) The biology and molecular biology of JC virus. In: Salzman NP (ed) The papovaviridae, Vol. 1: the polyomaviruses. Plenum Press, New York, pp 327-377
40. Walker DL, Padgett BL (1983) The epidemiology of human polyomaviruses. In: Sever JL, Madden DL (eds) Polyomaviruses and human neurological diseases. Alan R. Liss, New York, pp 99-106
41. Williams AO (1992) Pathology of HIV infection and AIDS in Africa. In: Williams AO (ed) AIDS: an African perspective. CRC Press, Boca Raton, pp 162-232
42. Yogo Y, Kitamura T, Sugimoto C, Ueki T, Aso Y, Hara K, Taguchi F (1990) Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J Virol 64: 3 139-3 143
43. ZuRhein GM, Chou SM (1965) Particles resembling papova viruses in human cerebral demyelinating disease. Science 148: 1 477-1 479