-
1
-
-
0029655887
-
Genotype profile of human polyomavirus JC excreted in urine of immunocompetent individuals
-
Agostini, H. T., Ryschkewitsch, C. F. & Stoner, G. L. (1996). Genotype profile of human polyomavirus JC excreted in urine of immunocompetent individuals. Journal of Clinical Microbiology 34, 159-164.
-
(1996)
Journal of Clinical Microbiology
, vol.34
, pp. 159-164
-
-
Agostini, H.T.1
Ryschkewitsch, C.F.2
Stoner, G.L.3
-
2
-
-
0030942563
-
Five complete genomes of JC virus type 3 from Africans and African Americans
-
Agostini, H. T., Ryschkewitsch, C. F., Brubaker, G. R., Shao, J. & Stoner, G. L. (1997 a). Five complete genomes of JC virus Type 3 from Africans and African Americans. Archives of Virology 142, 637-655.
-
(1997)
Archives of Virology
, vol.142
, pp. 637-655
-
-
Agostini, H.T.1
Ryschkewitsch, C.F.2
Brubaker, G.R.3
Shao, J.4
Stoner, G.L.5
-
3
-
-
0031446337
-
Asian genotypes of JC virus in native Americans and in a pacific island population: Markers of viral evolution and human migration
-
Agostini, H. T., Yanagihara, R., Davis, V., Ryschkewitsch, C. F. & Stoner, G. L. (1997 b). Asian genotypes of JC virus in native Americans and in a Pacific island population: markers of viral evolution and human migration. Proceedings of the National Academy of Sciences, USA 94, 14542-14546.
-
(1997)
Proceedings of the National Academy of Sciences, USA
, vol.94
, pp. 14542-14546
-
-
Agostini, H.T.1
Yanagihara, R.2
Davis, V.3
Ryschkewitsch, C.F.4
Stoner, G.L.5
-
4
-
-
0031902469
-
JC virus type 1 has multiple subtypes: Three new complete genomes
-
Agostini, H. T., Ryschkewitsch, C. F. & Stoner, G. L. (1998 a). JC virus Type 1 has multiple subtypes: three new complete genomes. Journal of General Virology 79, 801-805.
-
(1998)
Journal of General Virology
, vol.79
, pp. 801-805
-
-
Agostini, H.T.1
Ryschkewitsch, C.F.2
Stoner, G.L.3
-
5
-
-
0031953944
-
JC virus type 2: Definition of subtypes based on DNA sequence analysis of ten complete genomes
-
Agostini, H. T., Shishido-Hara, Y., Baumhefner, R. W., Singer, E. J., Ryschkewitsch, C. F. & Stoner, G. L. (1998 b). JC virus type 2: definition of subtypes based on DNA sequence analysis of ten complete genomes. Journal of General Virology 79, 1143-1151.
-
(1998)
Journal of General Virology
, vol.79
, pp. 1143-1151
-
-
Agostini, H.T.1
Shishido-Hara, Y.2
Baumhefner, R.W.3
Singer, E.J.4
Ryschkewitsch, C.F.5
Stoner, G.L.6
-
6
-
-
0031935813
-
The genome sequence of herpes simplex virus type 2
-
Dolan, A., Jamieson, F. E., Cunningham, C., Barnett, B. C. & McGeoch, D. J. (1998). The genome sequence of herpes simplex virus type 2. Journal of Virology 72, 2010-2021.
-
(1998)
Journal of Virology
, vol.72
, pp. 2010-2021
-
-
Dolan, A.1
Jamieson, F.E.2
Cunningham, C.3
Barnett, B.C.4
McGeoch, D.J.5
-
7
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
8
-
-
0003437299
-
-
Department of Genetics, University of Washington, Seattle, WA, USA
-
Felsenstein, J. (1992). PHYLIP (Phytogeny Inference Package), version 3.5c. Department of Genetics, University of Washington, Seattle, WA, USA.
-
(1992)
PHYLIP (Phytogeny Inference Package), Version 3.5c
-
-
Felsenstein, J.1
-
9
-
-
0025761265
-
Positive darwinian evolution in human influenza A viruses
-
Fitch, W. M., Leiter, J. M. E., Li, X. & Palese, P. (1991). Positive Darwinian evolution in human influenza A viruses. Proceedings of the National Academy of Sciences, USA 88, 4270-4274.
-
(1991)
Proceedings of the National Academy of Sciences, USA
, vol.88
, pp. 4270-4274
-
-
Fitch, W.M.1
Leiter, J.M.E.2
Li, X.3
Palese, P.4
-
10
-
-
0021242613
-
Human polyomavirus JC virus genome
-
Frisque, R. J., Bream, G. L. & Canella, M. T. (1984). Human polyomavirus JC virus genome. Journal of Virology 51, 458-469.
-
(1984)
Journal of Virology
, vol.51
, pp. 458-469
-
-
Frisque, R.J.1
Bream, G.L.2
Canella, M.T.3
-
11
-
-
0026657366
-
Parameters affecting the elongation block by RNA polymerase II at the SV40 attenuator-1 in vitro
-
Goldring, N. B., Kessler, M. & Aloni, Y. (1992). Parameters affecting the elongation block by RNA polymerase II at the SV40 attenuator-1 in vitro. Biochemistry 31, 8369-8376.
-
(1992)
Biochemistry
, vol.31
, pp. 8369-8376
-
-
Goldring, N.B.1
Kessler, M.2
Aloni, Y.3
-
12
-
-
0022118360
-
ACNUC - A portable retrieval system for nucleic acid sequence databases: Logical and physical designs and usage
-
Gouy, M., Gautier, C., Attimonelli, M., Lanave, C. & Di Paola, G. (1985). ACNUC - a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. CABIOS 1, 167-172.
-
(1985)
CABIOS
, vol.1
, pp. 167-172
-
-
Gouy, M.1
Gautier, C.2
Attimonelli, M.3
Lanave, C.4
Di Paola, G.5
-
13
-
-
9244234461
-
Geographical distribution of the human polyomavirus JC virus types A and B and isolation of a new type from Ghana
-
Guo, J., Kitamura, T., Ebihara, H., Sugimoto, C., Kunitake, T., Takehisa, J., Na, Y. Q., Al-Ahdal, M. N., Hallin, A., Kawabe, K., Taguchi, F. & Yogo, Y. (1996). Geographical distribution of the human polyomavirus JC virus types A and B and isolation of a new type from Ghana. Journal of General Virology 77, 919-927.
-
(1996)
Journal of General Virology
, vol.77
, pp. 919-927
-
-
Guo, J.1
Kitamura, T.2
Ebihara, H.3
Sugimoto, C.4
Kunitake, T.5
Takehisa, J.6
Na, Y.Q.7
Al-Ahdal, M.N.8
Hallin, A.9
Kawabe, K.10
Taguchi, F.11
Yogo, Y.12
-
14
-
-
0031659633
-
Four geographically distinct genotypes of JC virus are prevalent in China and Mongolia : Implications for the racial composition of modern China
-
Guo, J., Sugimoto, C., Kitamura, T., Ebihara, H., Kato, A., Guo, Z., Liu, J., Zheng, S. P., Wang, Y. L., Na, Y. Q., Suzuki, M., Taguchi, F. & Yogo, Y. (1998). Four geographically distinct genotypes of JC virus are prevalent in China and Mongolia : implications for the racial composition of modern China. Journal of General Virology 79, 2499-2505.
-
(1998)
Journal of General Virology
, vol.79
, pp. 2499-2505
-
-
Guo, J.1
Sugimoto, C.2
Kitamura, T.3
Ebihara, H.4
Kato, A.5
Guo, Z.6
Liu, J.7
Zheng, S.P.8
Wang, Y.L.9
Na, Y.Q.10
Suzuki, M.11
Taguchi, F.12
Yogo, Y.13
-
15
-
-
0029963710
-
A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences
-
Jakobsen, I. B. & Easteal, S. (1996). A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. CABIOS 12, 291-295.
-
(1996)
CABIOS
, vol.12
, pp. 291-295
-
-
Jakobsen, I.B.1
Easteal, S.2
-
16
-
-
0031713459
-
Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus
-
Jobes, D. V., Chima, S. C., Ryschkewitsch, C. F. & Stoner, G. L. (1998). Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus. Journal of General Virology 79, 2491-2498.
-
(1998)
Journal of General Virology
, vol.79
, pp. 2491-2498
-
-
Jobes, D.V.1
Chima, S.C.2
Ryschkewitsch, C.F.3
Stoner, G.L.4
-
17
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111-120.
-
(1980)
Journal of Molecular Evolution
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
18
-
-
0027403961
-
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
-
Li, W.-H. (1993). Unbiased estimation of the rates of synonymous and nonsynonymous substitution. Journal of Molecular Evolution 36, 96-99.
-
(1993)
Journal of Molecular Evolution
, vol.36
, pp. 96-99
-
-
Li, W.-H.1
-
19
-
-
0003421005
-
-
Sunderland, MA: Sinauer Associates
-
Li, W.-H. (1997). Molecular Evolution. Sunderland, MA: Sinauer Associates.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
20
-
-
0023074036
-
An evaluation of the molecular clock hypothesis using mammalian DNA sequences
-
Li, W.-H., Tanimura, M. & Sharp, P. M. (1987). An evaluation of the molecular clock hypothesis using mammalian DNA sequences. Journal of Molecular Evolution 25, 330-342.
-
(1987)
Journal of Molecular Evolution
, vol.25
, pp. 330-342
-
-
Li, W.-H.1
Tanimura, M.2
Sharp, P.M.3
-
21
-
-
0023740248
-
Rates and dates of divergence between AIDS virus nucleotide sequences
-
Li, W.-H., Tanimura, M. & Sharp, P. M. (1988). Rates and dates of divergence between AIDS virus nucleotide sequences. Molecular Biology and Evolution 5, 313-330.
-
(1988)
Molecular Biology and Evolution
, vol.5
, pp. 313-330
-
-
Li, W.-H.1
Tanimura, M.2
Sharp, P.M.3
-
22
-
-
0023876678
-
DNA rearrangements in organ-specific variants of polyomavirus JC strain GS
-
Loeber, G. & Dörries, K. (1988). DNA rearrangements in organ-specific variants of polyomavirus JC strain GS. Journal of Virology 62, 1730-1735.
-
(1988)
Journal of Virology
, vol.62
, pp. 1730-1735
-
-
Loeber, G.1
Dörries, K.2
-
23
-
-
0028914853
-
Molecular phylogeny and evolutionary timescale for the family of mammalian herpesviruses
-
McGeoch, D. J., Cook, S., Dolan, A., Jamieson, F. E. & Telford, E. A. R. (1995). Molecular phylogeny and evolutionary timescale for the family of mammalian herpesviruses. Journal of Molecular Biology 247, 443-458.
-
(1995)
Journal of Molecular Biology
, vol.247
, pp. 443-458
-
-
McGeoch, D.J.1
Cook, S.2
Dolan, A.3
Jamieson, F.E.4
Telford, E.A.R.5
-
24
-
-
0015232447
-
Cultivation of papova-like virus from human brain with progressive multifocal leukoencephalopathy
-
Padgett, B. L., Walker, D. L., Zurhein, G. M., Eckroad, R. J. & Dessel, B. H. (1971). Cultivation of papova-like virus from human brain with progressive multifocal leukoencephalopathy. Lancet i, 1257-1260.
-
(1971)
Lancet
, vol.1
, pp. 1257-1260
-
-
Padgett, B.L.1
Walker, D.L.2
Zurhein, G.M.3
Eckroad, R.J.4
Dessel, B.H.5
-
25
-
-
0028969767
-
Recombination in AIDS viruses
-
Robertson, D. L., Hahn, B. H. & Sharp, P. M. (1995). Recombination in AIDS viruses. Journal of Molecular Evolution 40, 249-259.
-
(1995)
Journal of Molecular Evolution
, vol.40
, pp. 249-259
-
-
Robertson, D.L.1
Hahn, B.H.2
Sharp, P.M.3
-
26
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing evolutionary trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing evolutionary trees. Molecular Biology and Evolution 4, 406-425.
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
27
-
-
0002433912
-
Polyomaviruses
-
Edited by B. N. Fields & D. M. Knipe. New York: Raven Press
-
Shah, K. V. (1990). Polyomaviruses. In Virology, 2nd edn, pp. 1609-1623. Edited by B. N. Fields & D. M. Knipe. New York: Raven Press.
-
(1990)
Virology, 2nd Edn
, pp. 1609-1623
-
-
Shah, K.V.1
-
28
-
-
0019314040
-
Host-dependent evolution of three papova viruses
-
Soeda, E., Maruyama, T., Arrand, J. R. & Griffin, B. E. (1980). Host-dependent evolution of three papova viruses. Nature 285, 165-167.
-
(1980)
Nature
, vol.285
, pp. 165-167
-
-
Soeda, E.1
Maruyama, T.2
Arrand, J.R.3
Griffin, B.E.4
-
29
-
-
0030745902
-
Typing of urinary JC virus DNA offers a novel means of tracing human migrations
-
Sugimoto, C., Kitamura, T., Guo, J., Al-Ahdal, M. N., Shchelkunov, S. N., Otova, B., Ondrejka, P., Chollet, J.-Y., El-Safi, S., Ettayebi, M., Gresenguet, G., Kocagoz, T., Chaiyarasamee, S., Thant, K. Z., Thein, S., Moe, K., Kobayashi, N., Taguchi, F. & Yogo, Y. (1997). Typing of urinary JC virus DNA offers a novel means of tracing human migrations. Proceedings of the National Academy of Sciences, USA 94, 9191-9196.
-
(1997)
Proceedings of the National Academy of Sciences, USA
, vol.94
, pp. 9191-9196
-
-
Sugimoto, C.1
Kitamura, T.2
Guo, J.3
Al-Ahdal, M.N.4
Shchelkunov, S.N.5
Otova, B.6
Ondrejka, P.7
Chollet, J.-Y.8
El-Safi, S.9
Ettayebi, M.10
Gresenguet, G.11
Kocagoz, T.12
Chaiyarasamee, S.13
Thant, K.Z.14
Thein, S.15
Moe, K.16
Kobayashi, N.17
Taguchi, F.18
Yogo, Y.19
-
30
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
31
-
-
0029819302
-
The genetical archaeology of the human genome
-
von Haeseler, A., Sajantila, A. & Pääbo, S. (1996). The genetical archaeology of the human genome. Nature Genetics 14, 135-140.
-
(1996)
Nature Genetics
, vol.14
, pp. 135-140
-
-
Haeseler, A.1
Sajantila, A.2
Pääbo, S.3
-
32
-
-
0031892518
-
Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
-
Weiller, G. F. (1998). Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Molecular Biology and Evolution 15, 326-335.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 326-335
-
-
Weiller, G.F.1
-
33
-
-
0020424331
-
Evolutionary changes of nucleotide sequences of papova viruses BKV and SV40: They are possibly hybrids
-
Yasunaga, T. & Miyata, T. (1982). Evolutionary changes of nucleotide sequences of papova viruses BKV and SV40: they are possibly hybrids. Journal of Molecular Evolution 19, 72-79.
-
(1982)
Journal of Molecular Evolution
, vol.19
, pp. 72-79
-
-
Yasunaga, T.1
Miyata, T.2
|