Alternate forms of MHC class II-associated invariant chain are not produced by alternative splicing in rainbow trout (Oncorhynchus mykiss) but are encoded by separate genes

Developmental and Comparative Immunology

Volumn 27, Issue 5, 2003, Pages 377-391

  Fujiki, Kazuhiro ^a   Smith, Cortney M ^a   Liu, Lei ^b   Sundick, Roy S ^b   Dixon, Brian ^a  

^a UNIVERSITY OF WATERLOO   (Canada)

^b WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Alternative splicing; Antigen presentation; Comparative immunology; Gene regulation; Invariant chain; Major histocompatibility gene; Rainbow trout; Teleost

Indexed keywords

COMPLEMENTARY DNA; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; THYROGLOBULIN;

ANIMAL CELL; ANIMAL TISSUE; ANTIGEN PRESENTATION; ARTICLE; CONTROLLED STUDY; GENETIC CODE; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEINASE INHIBITION; RAINBOW TROUT; RNA SPLICING; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING;

MYKISS; ONCORHYNCHUS MYKISS; SALMONIDAE; TELEOSTEI; TETRAPODA;

EID: 0037400731     PISSN: 0145305X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0145-305X(02)00119-2     Document Type: Article

References (49)

1. Dixon B., van Erp S.H., Rodrigues P.N., Egberts E., Stet R.J. Fish major histocompatibility complex genes: an expansion. Dev Comp Immunol. 19:(2):1995;109-133.
2. Stet R.J., Kruiswijk C.P., Saeij J.P., Wiegertjes G.F. Major histocompatibility genes in cyprinid fishes: theory and practice. Immunol Rev. 166:1998;301-316.
3. Miller N., Wilson M., Bengten E., Stuge T., Warr G., Clem W. Functional and molecular characterization of teleost leukocytes. Immunol Rev. 166:1998;187-197.
4. McConnell T.J., Godwin U.B., Cuthbertson B.J. Expressed major histocompatibility complex class II loci in fishes. Immunol Rev. 166:1998;294-300.
5. Sato A., Figueroa F., Murray B.W., Malaga-Trillo E., Zaleska-Rutczynska Z., Sultmann H., Toyosawa S., Wedekind C., Steck N., Klein J. Nonlinkage of major histocompatibility complex class I and class II loci in bony fishes. Immunogenetics. 51:(2):2000;108-116.
6. Shand R., Dixon B. Teleost major histocompatibility genes: diverse but not complex. Mod Aspects Immunobiol. 2:(2):2001;66-72.
7. Newcomb J.R., Carboy-Newcomb C., Cresswell P. Trimeric interactions of the invariant chain and its association with major histocompatibility complex class II alpha beta dimers. J Biol Chem. 271:(39):1996;24249-24256.
8. Ghosh P., Amaya M., Mellins E., Wiley D.C. The structure of an intermediate in class II MHC maturation: CLIP bound to HLA-DR3. Nature. 378:(6556):1995;457-462.
9. Kang S., Liang L., Parker C.D., Collawn J.F. Structural requirements for major histocompatibility complex class II invariant chain endocytosis and lysosomal targeting. J Biol Chem. 273:(32):1998;20644-20652.
10. Lotteau V., Teyton L., Peleraux A., Nilsson T., Karlsson L., Schmid S.L., Quaranta V., Peterson P.A. Intracellular transport of class II MHC molecules directed by invariant chain. Nature. 348:(6302):1990;600-605.
11. Pieters J., Bakke O., Dobberstein B. The MHC class II-associated invariant chain contains two endosomal targeting signals within its cytoplasmic tail. J Cell Sci. 106:(Pt 3):1993;831-846.
12. Strubin M., Berte C., Mach B. Alternative splicing and alternative initiation of translation explain the four forms of the Ia antigen-associated invariant chain. EMBO J. 5:(13):1986;3483-3488.
13. Arunachalam B., Lamb C.A., Cresswell P. Transport properties of free and MHC class II-associated oligomers containing different isoforms of human invariant chain. Int Immunol. 6:(3):1994;439-451.
14. Yamamoto K., Koch N., Steinmetz M., Hammerling G.J. One gene encodes two distinct Ia-associated invariant chains. J Immunol. 134:(5):1985;3461-3467.
15. Turk D., Guncar G., Turk V. The p41 fragment story. IUBMB Life. 48:(1):1999;7-12.
16. Nakagawa T., Roth W., Wong P., Nelson A., Farr A., Deussing J., Villadangos J.A., Ploegh H., Peters C., Rudensky A.Y. Cathepsin L: critical role in Ii degradation and CD4 T cell selection in the thymus. Science. 280:(5362):1998;450-453.
17. Shi G.P., Bryant R.A., Riese R., Verhelst S., Driessen C., Li Z., Bromme D., Ploegh H.L., Chapman H.A. Role for cathepsin F in invariant chain processing and major histocompatibility complex class II peptide loading by macrophages. J Exp Med. 191:(7):2000;1177-1186.
18. Driessen C., Bryant R.A., Lennon-Dumenil A.M., Villadangos J.A., Bryant P.W., Shi G.P., Chapman H.A., Ploegh H.L. Cathepsin S controls the trafficking and maturation of MHC class II molecules in dendritic cells. J Cell Biol. 147:(4):1999;775-790.
19. Mizuochi T., Yee S.T., Kasai M., Kakiuchi T., Muno D., Kominami E. Both cathepsin B and cathepsin D are necessary for processing of ovalbumin as well as for degradation of class II MHC invariant chain. Immunol Lett. 43:(3):1994;189-193.
20. Fineschi B., Arneson L.S., Naujokas M.F., Miller J. Proteolysis of major histocompatibility complex class II-associated invariant chain is regulated by the alternatively spliced gene product, p41. Proc Natl Acad Sci USA. 92:(22):1995;10257-10261.
21. Kampgen E., Koch N., Koch F., Stoger P., Heufler C., Schuler G., Romani N. Class II major histocompatibility complex molecules of murine dendritic cells: synthesis, sialylation of invariant chain, and antigen processing capacity are down-regulated upon culture. Proc Natl Acad Sci USA. 88:(8):1991;3014-3018.
22. Albanesi C., Cavani A., Girolomoni G. Interferon-gamma-stimulated human keratinocytes express the genes necessary for the production of peptide-loaded MHC class II molecules. J Invest Dermatol. 110:(2):1998;138-142.
23. Sanderson I.R., Ouellette A.J., Carter E.A., Harmatz P.R. Ontogeny of class II MHC mRNA in the mouse small intestinal epithelium. Mol Immunol. 29:(10):1992;1257-1263.
24. Serwe M., Reuter G., Sponaas A., Koch S., Koch N. Both invariant chain isoforms Ii31 and Ii41 promote class II antigen presentation. Int Immunol. 9:(7):1997;983-991.
25. Pure E., Inaba K., Crowley M.T., Tardelli L., Witmer-Pack M.D., Ruberti G., Fathman G., Steinman R.M. Antigen processing by epidermal Langerhans cells correlates with the level of biosynthesis of major histocompatibility complex class II molecules and expression of invariant chain. J Exp Med. 172:(5):1990;1459-1469.
26. Bremnes B., Rode M., Gedde-Dahl M., Nordeng T.W., Jacobsen J., Ness S.A., Bakke O. The MHC class II-associated chicken invariant chain shares functional properties with its mammalian homologs. Exp Cell Res. 259:(2):2000;360-369.
27. Burgess SC, Godbole K, Davison TF. Chicken MHC class II-associated invariant chain is expressed at high levels on the surface of chicken monocytes. GenBank Accession, 2001, AJ292038.
28. Yoder J.A., Haire R.N., Litman G.W. Cloning of two zebrafish cDNAs that share domains with the MHC class II-associated invariant chain. Immunogenetics. 50:(1/2):1999;84-88.
29. Liu L., Fujiki K., Dixon B., Sundick R.S. Cloning of a novel rainbow trout (Oncorhynchus mykiss) CC chemokine with a fractalkine-like stalk and a TNF decoy receptor using cDNA fragments containing All-rich elements. Cytokine. 17:(2):2002;71-81.
30. Sambrook J., Fritsch E.F., Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
31. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:(22):1994;4673-4680.
32. Kumar S., Tamura K., Nei M. MEGA: molecular evolutionary genetics analysis software for microcomputers. Comput Appl Bio Sci. 10:(2):1994;189-191.
33. Koch N., van Driel I.R., Gleeson P.A. Hijacking a chaperone: manipulation of the MHC class II presentation pathway. Immunol Today. 21:(11):2000;546-550.
34. Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J Mol Biol. 157:(1):1982;105-132.
35. Cserzo M., Wallin E., Simon I., von Heijne G., Elofsson A. Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Engng. 10:(6):1997;673-676.
36. Cope D.L., Lee S., Melvin D.R., Gould G.W. Identification of further important residues within the Glut4 carboxy-terminal tail which regulate subcellular trafficking. FEBS Lett. 481:(3):2000;261-265.
37. Johnson A.O., Lampson M.A., McGraw T.E. A di-leucine sequence and a cluster of acidic amino acids are required for dynamic retention in the endosomal recycling compartment of fibroblasts. Mol Biol Cell. 12:(2):2001;367-381.
38. Jasanoff A., Wagner G., Wiley D.C. Structure of a trimeric domain of the MHC class II-associated chaperonin and targeting protein Ii. EMBO J. 17:(23):1998;6812-6818.
39. Ashman J.B., Miller J. A role for the transmembrane domain in the trimerization of the MHC class II-associated invariant chain. J Immunol. 163:(5):1999;2704-2712.
40. Kudo J., Chao L.Y., Narni F., Saunders G.F. Structure of the human gene encoding the invariant gamma-chain of class II histocompatibility antigens. Nucl Acids Res. 13:(24):1985;8827-8841.
41. Agellon L.B., Davies S.L., Lin C.M., Chen T.T., Powers D.A. Rainbow trout has two genes for growth hormone. Mol Reprod Dev. 1:(1):1988;11-17.
42. Rescan P.Y., Gauvry L. Genome of the rainbow trout (Oncorhynchus mykiss) encodes two distinct muscle regulatory factors with homology to myoD. Comp Biochem Physiol B Biochem Mol Biol. 113:(4):1996;711-715.
43. McKay S.J., Devlin R.H., Smith M.J. Phylogeny of Pacific salmon and trout based on growth hormone type-2 and mitochondrial NADH dehydrogenase subunit 3 DNA sequences. Can J Fish Aquat Sci. 53:1996;1165-1176.
44. Shum B.P., Azumi K., Zhang S., Kehrer S.R., Raison R.L., Detrich H.W., Parham P. Unexpected beta2-microglobulin sequence diversity in individual rainbow trout. Proc Natl Acad Sci USA. 93:(7):1996;2779-2784.
45. Shum B.P., Avila D., Du Pasquier L., Kasahara M., Flajnik M.F. Isolation of a classical MHC class I cDNA from an amphibian: evidence for only one class I locus in the Xenopus MHC. J Immunol. 151:(10):1993;5376-5386.
46. Bevec T., Stoka V., Pungercic G., Cazzulo J.J., Turk V. A fragment of the major histocompatibility complex class II-associated p41 invariant chain inhibits cruzipain, the major cysteine proteinase from Trypanosoma cruzi. FEBS Lett. 401:(2/3):1997;259-261.
47. Peterson M., Miller J. Antigen presentation enhanced by the alternatively spliced invariant chain gene product p41. Nature. 357:(6379):1992;596-598.
48. Saitou N., Nei M. The neighbour-joining method: a new method for reconstructing phyogenetic trees. Mol Biol Evol. 4:1987;406-425.
49. Jukes T.H., Cantor C.R. Evolution of protein molecules. Munro H.N. Mammal protein metabol. 1969;21-132 Academic Press, New York.