A high-copy-number CACTA family transposon in temperate grasses and cereals

Genetics

Volumn 163, Issue 3, 2003, Pages 1097-1108

  Langdon, Tim ^a   Jenkins, Glyn ^b   Hasterok, Robert ^c   Jones, R Neil ^b   King, Ian P ^a  

^a ABERYSTWYTH UNIVERSITY   (United Kingdom)

^b ABERYSTWYTH UNIVERSITY   (United Kingdom)

^c UNIVERSITY OF SILESIA   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CEREAL; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC ORGANIZATION; GENOME; GRASS; MULTIGENE FAMILY; NONHUMAN; PLANT GENETICS; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; TRANSPOSON;

AMINO ACID SEQUENCE; BASE SEQUENCE; CEREALS; CONSERVED SEQUENCE; CROSSES, GENETIC; DNA PRIMERS; DNA TRANSPOSABLE ELEMENTS; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; PLANT PROTEINS; POACEAE; POLYMERASE CHAIN REACTION; RIBONUCLEASE H, CALF THYMUS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EMBRYOPHYTA; LOLIUM; LOLIUM PERENNE; POACEAE; TRANSPOSONS;

EID: 0037356448     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (34)

1. ATKINSON, P. W., W. D. WARREN and D. A. OBROCHTA, 1993 The Hobo transposable element of Drosophila can be cross-mobilized in houseflies and excises like the Ac element of maize. Proc. Natl. Acad. Sci. USA 90: 9693-9697.
2. AVRAMOVA, Z., A. TIKHONOV, M. S. CHEN and J. L. BENNETZEN, 1998 Matrix attachment regions and structural colinearity in the genomes of two grass species. Nucleic Acids Res. 26: 761-767.
3. BENNETT, M. D., A. V. Cox and I. J. LEITCH, 2000 Angiosperm DNA C-values database. http://www.rbgkew.org.uk/cval/database1.html.
4. CERRITELLI, S. M., O. Y. FEDOROFF, B. R. REID and R. J. CROUCH, 1998 A common 40 amino acid motif in eukaryotic RNases H1 and caulimovirus ORF VI proteins binds to duplex RNAs. Nucleic Acids Res. 26: 1834-1840.
5. CHOPRA, S., V. BRENDEL, J. B. ZHANG, J. D. AXTELL and T. PETERSON, 1999 Molecular characterization of a mutable pigmentation phenotype and isolation of the first active transposable element from Sorghum bicolor. Proc. Natl. Acad. Sci. USA 96: 15330-15335.
6. CRESSE, A. D., S. H. HULBERT, W. E. BROWN, J. R. LUCAS and J. L. BENNETZEN, 1995 Mu1-related transposable elements of maize preferentially insert into low copy number DNA. Genetics 140: 315-324.
7. FEDOROFF, N., M. SCHLAPPI and R. RAINA, 1995 Epigenetic regulation of the maize Spm transposon. Bioessays 17: 291-297.
8. GIERL, A., H. SAEDLER and P. A. PETERSON, 1989 Maize transposable elements. Annu. Rev. Genet. 23: 71-85.
9. GRAY, Y. H. M., 2000 It takes two transposons to tango - transposable-element-mediated chromosomal rearrangements. Trends Genet. 16: 461-468.
10. INGRAM, G. C., S. DOYLE, R. CARPENTER, E. A. SCHULTZ, R. SIMON et al., 1997 Dual role for fimbriata in regulating floral homeotic genes and cell division in Antirrhinum. EMBO J. 16: 6521-6534.
11. JENKINS, G., J. HEAD and J. W. FORSTER, 2000 Probing meiosis in hybrids of Lolium (Poaceae) with a discriminatory repetitive genomic sequence. Chromosoma 109: 280-286.
12. KUMAR, A., and J. L. BENNETZEN, 1999 Plant retrotransposons. Annu. Rev. Genet. 33: 479-532.
13. LANGDON, T., C. SEAGO, R. N. JONES, H. OUGHAM, H. THOMAS et al., 2000a De novo evolution of satellite DNA on the rye B chromosome. Genetics 154: 869-884.
14. LANGDON, T., C. SEAGO, M. MENDE, M. LEGGETT, H. THOMAS et al., 2000b Retrotransposon evolution in diverse plant genomes. Genetics 156: 313-325.
15. MARTIN, C., and C. LISTER, 1989 Genomejuggling by transposons: Tam3-induced rearrangements in Antirrhinum majus. Dev. Genet. 10: 438-451.
16. MASSON, P., M. STREM and N. FEDOROFF, 1991 The Tnpa and Tnpd gene-products of the Spm element are required for transposition in tobacco. Plant Cell 3: 73-85.
17. NACKEN, W. K., R. PIOTROWIAK, H. SAEDLER and H. SOMMER, 1991 The transposable element Tam1 from Antirrhinum majus shows structural homology to the maize transposon En/Spm and has no sequence specificity of insertion. Mol. Gen. Genet. 228: 201-208.
18. OZEKI, Y., E. DAVIES and J. TAKEDA, 1997 Somatic variation during long term subculturing of plant cells caused by insertion of a transposable element in a phenylalanine ammonia-lyase (PAL) gene. Mol. Gen. Genet. 254: 407-416.
19. PANAVAS, T., J. WEIR and E. L. WALKER, 1999 The structure and paramutagenicity of the R-marbled haplotype of Zea mays. Genetics 153: 979-991.
20. PARDUE, M. L., O. N. DANILEVSKAYA, K. LOWENHAUPT, F. SLOT and K. L. TRAVERSE, 1996 Drosophila telomeres: new views on chromosome evolution. Trends Genet. 12: 48-52.
21. RAINA, R., M. SCHLAPPI, B. KARUNANANDAA, A. ELHOFY and N. FEDOROFF, 1998 Concerted formation of macromolecular suppressor-mutator transposition complexes. Proc. Natl. Acad. Sci. USA 95: 8526-8531.
22. RHODES, P. R., and L. O. VODKIN, 1988 Organization of the Tgm family of transposable elements in soybean. Genetics 120: 597-604.
23. RUBIN, E., and A. A. LEVY, 1997 Abortive gap repair: underlying mechanism for Ds element formation. Mol. Cell. Biol. 17: 6294-6302.
24. SANMIGUEL, P., A. TIKHONOV, Y. K. JIN, N. MOTCHOULSKAIA, D. ZAKHAROV et al., 1996 Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
25. SANMIGUEL, P., B. S. GAUT, A. TIKHONOV, Y. NAKAJIMA and J. L. BFNNETZEN, 1998 The paleontology of intergene retrotransposons of maize. Nat. Genet. 20: 43-45.
26. SUONIEMI, A., D. SCHMIDT and A. H. SCHULMAN, 1997 BARE-1 insertion site preferences and evolutionary conservation of RNA and cDNA processing sites. Genetica 100: 219-230.
27. TAKAHASHI, S., Y. INAGAKI, H. SATOH, A. HOSHINO and S. IIDA, 1999 Capture of a genomic HMG domain sequence by the En/Spm-related transposable element Tpn1 in the Japanese morning glory. Mol. Gen. Genet. 261: 447-451.
28. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN and D. G. HIGGINS, 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
29. TIKHONOV, A. P., J. L. BENNETZEN and Z. V. AVRAMOVA, 2000 Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum. Plant Cell 12: 249-264.
30. TRENTMANN, S. M., H. SAEDLER and A. GIERL, 1993 The transposable element En/Spm-encoded TNPA protein contains a DNA binding and a dimerization domain. Mol. Gen. Genet. 238: 201-208.
31. UPADHYAYA, K. C., H. SOMMER, E. KREBBERS and H. SAEDLER, 1985 The paramutagenic line Niv-44 has a 5 kb insert, Tam-2, in the chalcone synthase gene of Antirrhinum-Majus. Mol. Gen. Genet. 199: 201-207.
32. YAMASHITA, S., T. MIKAMI and Y. KISHIMA, 1998 Tam3 in Antirrhinum majus is exceptional transposon in resistance to alteration by abortive gap repair: identification of nested transposons. Mol. Gen. Genet. 259: 468-474.
33. YAMASHITA, S., T. TAKANO-SHIMIZU, K. KITAMURA, T. MIKAMI and Y. KISHIMA, 1999 Resistance to gap repair of the transposon Tam3 in Antirrhinum majus: a role of the end regions. Genetics 153: 1899-1908.
34. ZHANG, Q., J. ARBUCKLE and S. R. WESSLER, 2000 Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize. Proc. Natl. Acad. Sci. USA 97: 1160-1165.