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Hooper, N. M., Ed.; Taylor & Francis; London; Chapter 11
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(a) Keynan, S.; Hooper, N. M.; Turner, A. J. In Zinc Metalloproteases in Health and Disease; Hooper, N. M., Ed.; Taylor & Francis; London, 1996; Chapter 11.
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Forrester, L.J.4
Zahler, W.L.5
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5
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0019962519
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The tight binding and reversibility features have allowed cilastatin to be exploited in purification of MDP by affinity chromatography
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Kropp H., Sundelof J.G., Hajdu R., Kahan F.M. Antimicrob. Agents Chemother. 22:1982;62. The tight binding and reversibility features have allowed cilastatin to be exploited in purification of MDP by affinity chromatography.
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Kropp, H.1
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6
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0021798830
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and references therein
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(a) Birnbaum J., Kahan F.M., Kropp H., Macdonald J.S. Am. J. Med. 78(Suppl. 6A):1985;3. and references therein.
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(b) Graham D.W., Ashton W.T., Barash L., Brown J.E., Brown R.D., Canning L.F., Chen A., Springer J.P., Rogers E.F. J. Med. Chem. 30:1987;1074.
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11
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(b) Fabiane S.M., Sohi M.K., Wan T., Payne D.J., Bateson J.H., Mitchell T., Sutton B.J. Biochem. 37:1998;12404.
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Fabiane, S.M.1
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(c) Carfi A., Duee E., Galleni M., Frere J.M., Dideberg O. Acta Crystallogr. D. Biol. Crystallog. 54:1998;313.
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Carfi, A.1
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Dideberg, O.5
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13
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0012171824
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note
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3 side chain is as effective as cilastatin itself: see ref 4 here.
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19
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0012207186
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Gandour, R. D., Schowen, R. L. Eds. Plenum: New York, Chapter 9, and references therein
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(b) Shefter, E. In Transition States of Biochemical Processes, Gandour, R. D., Schowen, R. L. Eds. Plenum: New York, 1978, Chapter 9, and references therein.
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Shefter, E.1
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23
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0015901579
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(a) Rühlmann A., Kukla D., Schwager P., Bartels K., Huber R. J. Mol. Biol. 77:1973;417.
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Rühlmann, A.1
Kukla, D.2
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Bartels, K.4
Huber, R.5
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27
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0030852320
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(e) Lapatto R., Krengel U., Schreuder H.A., Arkema A., de Boer B., Kalk K.H., Hol W.G.J., Grootenhuis P.D.J., Mulders W.M., Dijkema R., Theunissen H.J.M., Dijkstra B.W. EMBO J. 16:1997;5151.
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Lapatto, R.1
Krengel, U.2
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Arkema, A.4
De Boer, B.5
Kalk, K.H.6
Hol, W.G.J.7
Grootenhuis, P.D.J.8
Mulders, W.M.9
Dijkema, R.10
Theunissen, H.J.M.11
Dijkstra, B.W.12
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29
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0032080039
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and references therein
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a of a zinc-bound water molecule in some enzyme environments can vary from 6.2 to 6.8: Bounaga S., Laws A.P., Gallen M., Page M.I. Biochem. J. 331:1998;703. and references therein.
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Bounaga, S.1
Laws, A.P.2
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Page, M.I.4
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30
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11644261806
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(a) AutoDock treats the ligand as a flexible unit and the protein as a rigid unit. (a) Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. J. Comput. Chem. 19:1998;1639 (b) http://www.scripps.edu/pub/olson-web/doc/autodock/ (c) Hetényi C., Körtvélyesi T., Penke B. Bioorg. Med. Chem. 10:2002;1587 (d) Costantino G., Macchiarulo A., Camaioni E., Pellicciari R. J. Med. Chem. 44:2001;3786 (e) Sotriffer C.A., Flader W., Winger R.H., Rode B.M., Liedl K.R., Varga J.M. Methods. 20:2000;280 (f) Minke W.E., Diller D.J., Hol W.G.J., Verlinde M.J. J. Med. Chem. 42:1999;1778 (d) Bitomsky W., Wade R.C. J. Am. Chem. Soc. 121:1999;3004.
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J. Comput. Chem.
, vol.19
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Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
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31
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0012213376
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(a) AutoDock treats the ligand as a flexible unit and the protein as a rigid unit. (a) Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. J. Comput. Chem. 19:1998;1639 (b) http://www.scripps.edu/pub/olson-web/doc/autodock/ (c) Hetényi C., Körtvélyesi T., Penke B. Bioorg. Med. Chem. 10:2002;1587 (d) Costantino G., Macchiarulo A., Camaioni E., Pellicciari R. J. Med. Chem. 44:2001;3786 (e) Sotriffer C.A., Flader W., Winger R.H., Rode B.M., Liedl K.R., Varga J.M. Methods. 20:2000;280 (f) Minke W.E., Diller D.J., Hol W.G.J., Verlinde M.J. J. Med. Chem. 42:1999;1778 (d) Bitomsky W., Wade R.C. J. Am. Chem. Soc. 121:1999;3004.
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-
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32
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0036191829
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(a) AutoDock treats the ligand as a flexible unit and the protein as a rigid unit. (a) Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. J. Comput. Chem. 19:1998;1639 (b) http://www.scripps.edu/pub/olson-web/doc/autodock/ (c) Hetényi C., Körtvélyesi T., Penke B. Bioorg. Med. Chem. 10:2002;1587 (d) Costantino G., Macchiarulo A., Camaioni E., Pellicciari R. J. Med. Chem. 44:2001;3786 (e) Sotriffer C.A., Flader W., Winger R.H., Rode B.M., Liedl K.R., Varga J.M. Methods. 20:2000;280 (f) Minke W.E., Diller D.J., Hol W.G.J., Verlinde M.J. J. Med. Chem. 42:1999;1778 (d) Bitomsky W., Wade R.C. J. Am. Chem. Soc. 121:1999;3004.
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Bioorg. Med. Chem.
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Hetényi, C.1
Körtvélyesi, T.2
Penke, B.3
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33
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0035829430
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(a) AutoDock treats the ligand as a flexible unit and the protein as a rigid unit. (a) Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. J. Comput. Chem. 19:1998;1639 (b) http://www.scripps.edu/pub/olson-web/doc/autodock/ (c) Hetényi C., Körtvélyesi T., Penke B. Bioorg. Med. Chem. 10:2002;1587 (d) Costantino G., Macchiarulo A., Camaioni E., Pellicciari R. J. Med. Chem. 44:2001;3786 (e) Sotriffer C.A., Flader W., Winger R.H., Rode B.M., Liedl K.R., Varga J.M. Methods. 20:2000;280 (f) Minke W.E., Diller D.J., Hol W.G.J., Verlinde M.J. J. Med. Chem. 42:1999;1778 (d) Bitomsky W., Wade R.C. J. Am. Chem. Soc. 121:1999;3004.
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J. Med. Chem.
, vol.44
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Costantino, G.1
Macchiarulo, A.2
Camaioni, E.3
Pellicciari, R.4
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34
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0034427019
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(a) AutoDock treats the ligand as a flexible unit and the protein as a rigid unit. (a) Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. J. Comput. Chem. 19:1998;1639 (b) http://www.scripps.edu/pub/olson-web/doc/autodock/ (c) Hetényi C., Körtvélyesi T., Penke B. Bioorg. Med. Chem. 10:2002;1587 (d) Costantino G., Macchiarulo A., Camaioni E., Pellicciari R. J. Med. Chem. 44:2001;3786 (e) Sotriffer C.A., Flader W., Winger R.H., Rode B.M., Liedl K.R., Varga J.M. Methods. 20:2000;280 (f) Minke W.E., Diller D.J., Hol W.G.J., Verlinde M.J. J. Med. Chem. 42:1999;1778 (d) Bitomsky W., Wade R.C. J. Am. Chem. Soc. 121:1999;3004.
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Methods
, vol.20
, pp. 280
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Sotriffer, C.A.1
Flader, W.2
Winger, R.H.3
Rode, B.M.4
Liedl, K.R.5
Varga, J.M.6
-
35
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0033587105
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(a) AutoDock treats the ligand as a flexible unit and the protein as a rigid unit. (a) Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. J. Comput. Chem. 19:1998;1639 (b) http://www.scripps.edu/pub/olson-web/doc/autodock/ (c) Hetényi C., Körtvélyesi T., Penke B. Bioorg. Med. Chem. 10:2002;1587 (d) Costantino G., Macchiarulo A., Camaioni E., Pellicciari R. J. Med. Chem. 44:2001;3786 (e) Sotriffer C.A., Flader W., Winger R.H., Rode B.M., Liedl K.R., Varga J.M. Methods. 20:2000;280 (f) Minke W.E., Diller D.J., Hol W.G.J., Verlinde M.J. J. Med. Chem. 42:1999;1778 (d) Bitomsky W., Wade R.C. J. Am. Chem. Soc. 121:1999;3004.
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J. Med. Chem.
, vol.42
, pp. 1778
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Minke, W.E.1
Diller, D.J.2
Hol, W.G.J.3
Verlinde, M.J.4
-
36
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0033531628
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(a) AutoDock treats the ligand as a flexible unit and the protein as a rigid unit. (a) Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. J. Comput. Chem. 19:1998;1639 (b) http://www.scripps.edu/pub/olson-web/doc/autodock/ (c) Hetényi C., Körtvélyesi T., Penke B. Bioorg. Med. Chem. 10:2002;1587 (d) Costantino G., Macchiarulo A., Camaioni E., Pellicciari R. J. Med. Chem. 44:2001;3786 (e) Sotriffer C.A., Flader W., Winger R.H., Rode B.M., Liedl K.R., Varga J.M. Methods. 20:2000;280 (f) Minke W.E., Diller D.J., Hol W.G.J., Verlinde M.J. J. Med. Chem. 42:1999;1778 (d) Bitomsky W., Wade R.C. J. Am. Chem. Soc. 121:1999;3004.
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J. Am. Chem. Soc.
, vol.121
, pp. 3004
-
-
Bitomsky, W.1
Wade, R.C.2
-
38
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0012137943
-
-
note
-
The docked energies are given here as values indicative of strong binding, however, no specific inference can be drawn by comparison of these values for the different structures.
-
-
-
-
40
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0012210557
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note
-
The other docked conformers had the same general orientation as that shown here, however, these were not as closely aligned as the set shown for cilastatin in Figure 6.
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-
-
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41
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0012210558
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note
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A variety of docked conformers was observed with glycyldehydrophenylalanine. Some of these had a low docked energy although they were not orientated in a catalytically-competent manner.
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-
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42
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0012206868
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note
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Reversible inhibitors are associated with less side effects than covalently-binding inhibitors and are, therefore, advantageous for treatment of conditions involving endogenous enzymes; matrix metalloproteases constitute one relevant subset of such enzymes.
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44
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0035969964
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Fedorov A., Shi W., Kicska G., Fedorov E., Tyler P.C., Furneaux R.H., Hanson J.C., Gainsford G.J., Larese J.Z., Schramm V.L., Almo S.C. Biochemistry. 40:2001;853.
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Biochemistry
, vol.40
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Fedorov, A.1
Shi, W.2
Kicska, G.3
Fedorov, E.4
Tyler, P.C.5
Furneaux, R.H.6
Hanson, J.C.7
Gainsford, G.J.8
Larese, J.Z.9
Schramm, V.L.10
Almo, S.C.11
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45
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0012212855
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http://www.rcsb.org.com.
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46
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0012170992
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http://www.expasy.ch/spdbv/mainpage.html.
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47
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0012135075
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http://www.povray.com.
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