Structure and expression of the rice class-I type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture

Plant Journal

Volumn 33, Issue 3, 2003, Pages 531-541

  Jang, In Cheol ^a   Pahk, Yoon Mok ^a   Song, Sang Ik ^a   Kwon, Ho Jeong ^b   Nahm, Baek Hie ^a   Kim, Ju Kon ^a  

^a Myong Ji University   (South Korea)

^b Sejong University   (South Korea)

Author keywords

Active complex formation; Altered phenotype; Histone deacetylase; Overexpression; Transgenic plants

Indexed keywords

AMINO ACIDS; ARCHITECTURE; CELLS; DNA; GENES; PROTEINS; RNA;

TRANSGENIC PLANTS;

PLANTS (BOTANY);

ABSCISIC ACID; AMINO ACID SEQUENCE; CULTURE TECHNIQUES; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; HISTONE DEACETYLASES; HISTONES; HYDROXAMIC ACIDS; ISOENZYMES; MOLECULAR SEQUENCE DATA; MUTATION; ORYZA SATIVA; PHENOTYPE; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

EMBRYOPHYTA; EUKARYOTA; VECTORS; ZEA MAYS;

EID: 0037324739     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01650.x     Document Type: Article

References (39)

1. Bartl, S., Taplick, J., Lagger, G., Khier, H., Kuchler, K. and Seiser, C. (1997) Identification of mouse histone deacetylase 1 as a growth factor-inducible gene. Mol. Cell. Biol. 17, 5033-5043.
2. Bernstein, B.E., Tong, J.K. and Schreiber, S.L. (2000) Genomewide studies of histone deacetylase function in yeast. Proc. Natl. Acad. Sci. USA, 97, 13708-13713.
3. Brosch, G., Lusser, A., Goralik-Schramel, M. and Loidl, P. (1996) Purification and characterization of a high molecular weight histone deacetylase complex (HD2) of maize embryos. Biochemistry, 35, 15907-15914.
4. Chang, C. and Meyerowitz, E.M. (1986) Molecular cloning and DNA sequence of the Arabidopsis thaliana alchhol dehydrogenase gene. Proc. Natl. Acad. Sci. USA, 83, 1408-1412.
5. Chen, Z.J. and Pikaard, C.S. (1997) Epigenetic silencing of RNA polymerase 1 transcription: a role for DNA methylation and histone modification in nucleoar dominance. Genes Dev. 11, 2124-2136.
6. Christensen, A.H. and Quail, P.H. (1996) Ubiquitin promoter-based vectors for high-level expression of selectable and/or screenable marker genes in monocotyledonous plants. Transgenic Res. 5, 213-218.
7. Dangl, M., Brosch, G., Haas, H., Loidl, P. and Lusser, A. (2001) Comparative analysis of HD2 type histone deacetylases in higher plants. Planta, 213, 280-285.
8. Finnegan, E.J. (2001) Is plant gene expression regulated globalty? Potent histone deacetylase inhibitors built from trichostatin A and cyclic tetrapeptide antibiotics including trapoxin. Trends Genet. 17, 361-365.
9. Furumai, R., Komatsu, Y., Nishino, N., Khochbin, S., Yoshida, M. and Horinouchi, S. (2001) Potent histone deacetylase inhibitors built from trichostatin A and cyclic tetrapeptide antibiotics including trapoxin. Proc. Natl. Acad. Sci. USA, 98, 87-92.
10. Grozinger, C.M. and Schreiber, S.L. (2002) Deacetylase enzymes: biological functions and the use of small-molecute inhibitors. Chem. Biol. 9, 3-16.
11. Hassig, C.A., Tong, J.K., Fleischer, T.C., Owa, T., Grable, P.G., Ayer, D.E. and Schreiber, S.L. (1998) A role for histone deacetylase activity in HDAC1-mediated transcriptional repression. Proc. Natl. Acad. Sci. USA, 95, 3519-3524.
12. Hu, E., Chen, Z., Fredrickson, T., Zhu, Y., Kirkpatrick, R., Zhang, G.-F., Johanson, K., Sung, C.-M., Liu, R. and Winkler, J. (2000) Cloning and characterization of a novel human class I histone deacetylase that functions as a transcription repressor. J. Biol. Chem. 275, 15254-15264.
13. Jang, I.-C., Choi, W.-B., Lee, K.-H., Song, S.I., Nahm, B.H. and Kim, J.-K. (2002) High-level and ubiquitious expression of the rice cytochrome c gene OsCc1and its promoter activity in transgenic plants provides a useful promoter for transgenesis of monocots. Plant Physiol. 129, 1473-1481.
14. Jang, I.-C., Nahm, B.H. and Kim, J.-K. (1999) Subcellular targeting of green fluorescent protein to plastids in transgenic rice plants provides a high-level expression system. Mol. Breed. 5, 453-461.
15. Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680-685.
16. Lagger, G., O'Carroll, D., Rembold, M. et al. (2002) Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J. 21, 2672-2681.
17. Lechner, T., Lusser, A., Pipal, A., Brosch, G., Loidl, A., Goralik-Schramel, M., Sendra, R., Wegener, S., Walton, J. and Loidl, P. (2000) RPD3-type histone deacetylases in maize embryos. Biochemistry, 39, 1683-1692.
18. Lusser, A. (2002) Acetylated, methylated, remodeled: chromatin states for gene regulation. Curr. Opin. Plant Biol. 5, 437-443.
19. Lusser, A., Brosch, G., Loidl, A., Haas, H. and Loidl, P. (1997) Identification of maize histone deacetylae HD2 as an acidic nucleolar phosphoprotein. Science, 277, 88-91.
20. Lusser, A., Koelle, D. and Loidl, P. (2001) Histone acetylation: lessons from the plant kingdom. Trends Plant Sci. 6, 59-65.
21. Mahlknecht, U., Emiliani, S., Najfeld, V., Young, S. and Verdin, E. (1999) Genomic organization and chromosomal localization of the human histone deacetylase 3 gene. Genomics, 56, 197-202.
22. Mariadason, J.M., Corner, G.A. and Augenlicht, L.H. (2000) Genetic reprogramming in pathways of colonic cell maturation induced by short chain fatty acids: comparison with trichostatin A, Sulindac, and Curcumin and implications for chemoprevention of colon cancer. Cancer Res. 60, 4561-4572.
23. Mlynarova, L., Loonen, A., Heldens, J., Jansen, R.C., Kerzer, P., Stiekema, W.J. and Nap, J.P. (1994) Reduced position effect in mature transgenic plants conferred by the chicken lysozyme matrix-associated region. Plant Cell, 6, 417-426.
24. Moazed, D. (2001) Enzymatic activities of Sir2 and chromatin silencing. Curr. Opin. Cell Biol. 13, 232-238.
25. Murfett, J., Wang, X.-J., Hagen, G. and Guilfoyle, T.J. (2001) Identification of Arabidopsis histone deacetylase HDA6 mutants that affect transgene expression. Plant Cell, 13, 1047-1061.
26. Rossi, V., Hartings, H. and Motto, M. (1998) Identification and characterization of an RPD3 homologue from maize (Zea mays L.) that is able to complement an rpd3 null mutant of Saccharomyces cerevisiae. Mol. Gen. Genet. 258, 288-296.
27. Rundlett, S.E., Carmen, A.A., Kobayashi, R., Bavykin, S., Turner, B.M. and Grunstein, M. (1996) HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription. Proc. Natl. Acad. Sci. USA, 93, 14503-14508.
28. Seo, M. and Koshiba, T. (2002) Complex regulation of ABA biosynthesis in plants. Trends Plant Sci, 7, 41-48.
29. Sharp, P.A. and Burge, C.B. (1997) Classification of introns: U2-type or U12-type. Cell, 91, 875-879.
30. Shen, Q. and Ho, T.H. (1995) Functional dissection of an abscisic acid (ABA) -inducible gene reveals two independent ABA-responsive complexes each containing a G-box and a novel cis-acing element. Plant Cell, 7, 295-307.
31. Takami, Y., Kikuchi, H. and Nakayama, T. (1999) Chicken histone deacetylase-2 controls the amount of the IgM H-chain at the steps of both transcription of its gene and alternative processing of its pre-mRNA in the DT40 cell line. J. Biol. Chem. 274, 23977-23990.
32. Takami, Y. and Nakayama, T. (2000) N-terminal region, C-terminal region, nuclear export signal, and deacetylation activity of histone deacetylase-3 are essential for the viability of the DT40 chicken B cell line. J. Biol. Chem. 275, 16191-16201.
33. Taunton, J., Hassig, C.A. and Schreiber, S.L. (1996) A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. Science, 272, 408-411.
34. Tian, L. and Chen, Z.J. (2001) Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. Proc. Natl, Acad. Sci. USA, 98, 200-205.
35. Vidal, M. and Garber, R.F. (1991) RPD3 encodes a second factor required to achieve maximum positive and negative transcriptional states in Saccharomyces cerevisiae. Mol. Cell. Biol. 11, 6317-6327.
36. Waterborg, J.H., Winicov, K. and Harrington, R.E. (1987) Histone variants and acetylated species from the alfalfa plant Medicago sativa. Arch. Biochem. Biophy. 256, 167-178.
37. Wu, K., Malik, K., Tian, L., Brown, D. and Mikl, B. (2000a) Functional analysis of a RPD3 histone deacetylase homologues in Arabidopsis thaliana. Plant Mol. Biol. 44, 167-176.
38. Wu, K., Tian, L., Malik, K., Brown, D. and Mikl, B. (2000b) Functional analysis of HD2 histone deacetylase homologues in Arabidopsis thaliana. Plant J. 22, 19-27.
39. Yoshida, M., Kijima, M., Akita, M. and Beppu, T. (1990) Potent and specific inhbition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A. J. Biol. Chem. 265, 17174-17179.