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Volumn 69, Issue 2, 2003, Pages 747-753

Molecular characterization of astroviruses by reverse transcriptase PCR and sequence analysis: Comparison of clinical and environmental isolates from South Africa

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; CONTAMINATION; ENZYMES; WASTEWATER TREATMENT;

EID: 0037319392     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.2.747-753.2003     Document Type: Article
Times cited : (53)

References (66)
  • 3
    • 0030741955 scopus 로고    scopus 로고
    • Detection and genetic differentiation of human astroviruses: Phylogenetic grouping varies by coding region
    • Belliot, G., H. Laveran, and S. S. Monroe. 1997. Detection and genetic differentiation of human astroviruses: phylogenetic grouping varies by coding region. Arch. Virol. 142:1323-1334.
    • (1997) Arch. Virol. , vol.142 , pp. 1323-1334
    • Belliot, G.1    Laveran, H.2    Monroe, S.S.3
  • 4
    • 0002413120 scopus 로고
    • Impact of diarrheal diseases worldwide
    • A. Z. Kapikian (ed.). Marcel Dekker, Inc. New York, N.Y.
    • Bern, C., and R. I. Glass. 1994. Impact of diarrheal diseases worldwide, p. 1-26. In A. Z. Kapikian (ed.), Viral infections of the gastrointestinal tract, 2nd ed. Marcel Dekker, Inc. New York, N.Y.
    • (1994) Viral Infections of the Gastrointestinal Tract, 2nd Ed. , pp. 1-26
    • Bern, C.1    Glass, R.I.2
  • 5
    • 0032804562 scopus 로고    scopus 로고
    • Prevalence of group A rotavirus, human calicivirus, astrovirus, and adenovirus type 40 and 41 infections among children with acute gastroenteritis in Dijon, France
    • Bon, F., P. Fascia, M. Dauvergne, D. Tenenbaum, H. Planson, A. M. Petion, P. Pothier, and E. Kohli. 1999. Prevalence of group A rotavirus, human calicivirus, astrovirus, and adenovirus type 40 and 41 infections among children with acute gastroenteritis in Dijon, France. J. Clin. Microbiol. 37:3055-3058.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 3055-3058
    • Bon, F.1    Fascia, P.2    Dauvergne, M.3    Tenenbaum, D.4    Planson, H.5    Petion, A.M.6    Pothier, P.7    Kohli, E.8
  • 6
    • 0033795657 scopus 로고    scopus 로고
    • Human astrovirus isolation and propagation in multiple cell lines
    • Brinker, J. P., N. R. Blacklow, and J. E. Herrmann. 2000. Human astrovirus isolation and propagation in multiple cell lines. Arch. Virol. 145:1847-1856.
    • (2000) Arch. Virol. , vol.145 , pp. 1847-1856
    • Brinker, J.P.1    Blacklow, N.R.2    Herrmann, J.E.3
  • 7
    • 0030347111 scopus 로고    scopus 로고
    • The molecular biology of astro-viruses
    • Carter, M. J., and M. M. Willcocks. 1996. The molecular biology of astro-viruses. Arch. Virol. Suppl. 12:277-285.
    • (1996) Arch. Virol. Suppl. , vol.12 , pp. 277-285
    • Carter, M.J.1    Willcocks, M.M.2
  • 8
    • 0030441818 scopus 로고    scopus 로고
    • Viral gastroenteritis: Small round structured viruses, caliciviruses and astroviruses. Part II. The epidemiological perspective
    • Caul, E. O. 1996. Viral gastroenteritis: small round structured viruses, caliciviruses and astroviruses. Part II. The epidemiological perspective. J. Clin. Pathol. 49:959-964.
    • (1996) J. Clin. Pathol. , vol.49 , pp. 959-964
    • Caul, E.O.1
  • 9
    • 0034084124 scopus 로고    scopus 로고
    • Detection of astroviruses, enteroviruses, and adenovirus types 40 and 41 in surface waters collected and evaluated by the information collection rule and an integrated cell culture-nested PCR procedure
    • Chapron, C. D., N. A. Ballester, J. H. Fontaine, C. N. Frades, and A. B. Margolin. 2000. Detection of astroviruses, enteroviruses, and adenovirus types 40 and 41 in surface waters collected and evaluated by the information collection rule and an integrated cell culture-nested PCR procedure. Appl. Environ. Microbiol. 66:2520-2525.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2520-2525
    • Chapron, C.D.1    Ballester, N.A.2    Fontaine, J.H.3    Frades, C.N.4    Margolin, A.B.5
  • 10
    • 0033853433 scopus 로고    scopus 로고
    • The detection of astrovirus in sludge biosolids using an integrated cell culture nested PCR technique
    • Chapron, C. D., N. A. Ballester, and A. B. Margolin. 2000. The detection of astrovirus in sludge biosolids using an integrated cell culture nested PCR technique. J. Appl. Microbiol. 89:11-15.
    • (2000) J. Appl. Microbiol. , vol.89 , pp. 11-15
    • Chapron, C.D.1    Ballester, N.A.2    Margolin, A.B.3
  • 11
    • 0025922810 scopus 로고
    • A review of the epidemiology and diagnosis of water-borne viral infections
    • Cubitt, W. D. 1991. A review of the epidemiology and diagnosis of water-borne viral infections. Water Sci. Technol. 24:197-203.
    • (1991) Water Sci. Technol. , vol.24 , pp. 197-203
    • Cubitt, W.D.1
  • 12
    • 0032908130 scopus 로고    scopus 로고
    • Application of electronmicroscopy, enzyme immunoassay, and RT-PCR to monitor an outbreak of astrovirus type 1 in a paediatric bone marrow transplant unit
    • Cubitt, W. D., D. K. Mitchell, M. J. Carter, M. M. Willcocks, and H. Holzel. 1999. Application of electronmicroscopy, enzyme immunoassay, and RT-PCR to monitor an outbreak of astrovirus type 1 in a paediatric bone marrow transplant unit. J. Med. Virol. 57:313-321.
    • (1999) J. Med. Virol. , vol.57 , pp. 313-321
    • Cubitt, W.D.1    Mitchell, D.K.2    Carter, M.J.3    Willcocks, M.M.4    Holzel, H.5
  • 17
    • 0021765815 scopus 로고
    • Astrovirus-like particles associated with hepatitis in ducklings
    • Gough, R. R., M. S. Collins, E. Borland, and L. F. Keymer. 1984. Astrovirus-like particles associated with hepatitis in ducklings. Vet. Rec. 14:279.
    • (1984) Vet. Rec. , vol.14 , pp. 279
    • Gough, R.R.1    Collins, M.S.2    Borland, E.3    Keymer, L.F.4
  • 18
    • 8444248340 scopus 로고    scopus 로고
    • Waterborne diseases: Update on water quality assessment and control
    • Grabow, W. O. K. 1996. Waterborne diseases: update on water quality assessment and control. Water SA (Pretoria) 22:193-202.
    • (1996) Water SA (Pretoria) , vol.22 , pp. 193-202
    • Grabow, W.O.K.1
  • 20
    • 0033851134 scopus 로고    scopus 로고
    • Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA
    • Imada, T., S. Yamaguchi, M. Masaji, K. Tsukamoto, M. Kubo, and A. Morooka. 2000. Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA. J. Virol. 74:8487-8493.
    • (2000) J. Virol. , vol.74 , pp. 8487-8493
    • Imada, T.1    Yamaguchi, S.2    Masaji, M.3    Tsukamoto, K.4    Kubo, M.5    Morooka, A.6
  • 22
    • 0028584393 scopus 로고
    • Serotyping of human astrovirus strains by immunogold staining electron microscopy
    • Kjeldsberg, E. 1994. Serotyping of human astrovirus strains by immunogold staining electron microscopy. J. Virol. Methods 50:137-144.
    • (1994) J. Virol. Methods , vol.50 , pp. 137-144
    • Kjeldsberg, E.1
  • 23
    • 0034123772 scopus 로고    scopus 로고
    • Molecular characterization of an avian astrovirus
    • Koci, M. D., B. S. Seal, and S. Schultz-Cherry. 2000. Molecular characterization of an avian astrovirus. J. Virol. 74:6173-6177.
    • (2000) J. Virol. , vol.74 , pp. 6173-6177
    • Koci, M.D.1    Seal, B.S.2    Schultz-Cherry, S.3
  • 25
    • 0023077170 scopus 로고
    • Astroviruses: Human and animal
    • Kurtz, J. B., and T. W. Lee. 1987. Astroviruses: human and animal. CIBA Found. Symp. 128:92-101.
    • (1987) CIBA Found. Symp. , vol.128 , pp. 92-101
    • Kurtz, J.B.1    Lee, T.W.2
  • 26
    • 0027957676 scopus 로고
    • Prevalence of human astrovirus serotypes in the Oxford region 1976-1992, with evidence for two new serotypes
    • Lee, T. W., and J. B. Kurtz. 1994. Prevalence of human astrovirus serotypes in the Oxford region 1976-92, with evidence for two new serotypes. Epidemiol. Infect. 112:187-193.
    • (1994) Epidemiol. Infect. , vol.112 , pp. 187-193
    • Lee, T.W.1    Kurtz, J.B.2
  • 28
    • 84869492570 scopus 로고
    • Viruses in infantile gastroenteritis
    • Madeley, C. R., and B. P. Cosgrove. 1975. Viruses in infantile gastroenteritis. Lancet i:124.
    • (1975) Lancet , vol.1 , pp. 124
    • Madeley, C.R.1    Cosgrove, B.P.2
  • 29
    • 0029038379 scopus 로고
    • Optimization of a PCR method for the detection of astrovirus type 1 in environmental samples
    • Marx, F. E., M. B. Taylor, and W. O. K. Grabow. 1995. Optimization of a PCR method for the detection of astrovirus type 1 in environmental samples. Water Sci. Technol. 31:359-362.
    • (1995) Water Sci. Technol. , vol.31 , pp. 359-362
    • Marx, F.E.1    Taylor, M.B.2    Grabow, W.O.K.3
  • 30
    • 0003070035 scopus 로고    scopus 로고
    • The prevalence of human astrovirus and enteric adenovirus infection in South African patients with gastroenteritis
    • Marx, F. E., M. B. Taylor, and W. O. K. Grabow. 1998. The prevalence of human astrovirus and enteric adenovirus infection in South African patients with gastroenteritis. Southern Afr. J. Epidemiol. Infect. 13:5-9.
    • (1998) Southern Afr. J. Epidemiol. Infect. , vol.13 , pp. 5-9
    • Marx, F.E.1    Taylor, M.B.2    Grabow, W.O.K.3
  • 31
    • 0032125831 scopus 로고    scopus 로고
    • The application of a reverse transcriptase-polymerase chain reaction oligonucleotide probe assay for the detection of human astroviruses in environmental water
    • Marx, F. E., M. B. Taylor, and W. O. K. Grabow. 1998. The application of a reverse transcriptase-polymerase chain reaction oligonucleotide probe assay for the detection of human astroviruses in environmental water. Water Res. 32:2147-2153.
    • (1998) Water Res. , vol.32 , pp. 2147-2153
    • Marx, F.E.1    Taylor, M.B.2    Grabow, W.O.K.3
  • 32
    • 0002649910 scopus 로고    scopus 로고
    • Astroviruses
    • B. N. Fields, D. M. Knipe, P. M. Howley, R. M. Chanock, J. L. Melnick, T. P. Monath, B. Roizman, and S. E. Straus (ed.). Lippincott-Raven Publishers, Philadelphia, Pa
    • Matsui, S. M., and H. B. Greenberg. 1996. Astroviruses, p. 811-824. In B. N. Fields, D. M. Knipe, P. M. Howley, R. M. Chanock, J. L. Melnick, T. P. Monath, B. Roizman, and S. E. Straus (ed.), Fields virology, 3rd ed. Lippincott-Raven Publishers, Philadelphia, Pa.
    • (1996) Fields Virology, 3rd Ed. , pp. 811-824
    • Matsui, S.M.1    Greenberg, H.B.2
  • 34
    • 0002429840 scopus 로고
    • Growth, assay and purification of picornaviruses
    • B. W. J. Mahy (ed.). IRL Press Ltd., Oxford, United Kingdom
    • Minor, P. D. 1985. Growth, assay and purification of picornaviruses, p. 25-41. In B. W. J. Mahy (ed.), Virology: a practical approach. IRL Press Ltd., Oxford, United Kingdom.
    • (1985) Virology: A Practical Approach , pp. 25-41
    • Minor, P.D.1
  • 35
    • 0028849217 scopus 로고
    • Virologic features of an astrovirus diarrhea outbreak in a day care center revealed by reverse transcriptase-polymerase chain reaction
    • Mitchell, D. K., S. S. Monroe, X. Jiang, D. O. Matson, R. I. Glass, and L. K. Pickering. 1995. Virologic features of an astrovirus diarrhea outbreak in a day care center revealed by reverse transcriptase-polymerase chain reaction. J. Infect. Dis. 172:1437-1444.
    • (1995) J. Infect. Dis. , vol.172 , pp. 1437-1444
    • Mitchell, D.K.1    Monroe, S.S.2    Jiang, X.3    Matson, D.O.4    Glass, R.I.5    Pickering, L.K.6
  • 36
    • 0030981902 scopus 로고    scopus 로고
    • Molecular characterisation of the 3′-end of the astrovirus genome
    • Monceyron, C., B. Grinde, and T. Ø. Jonassen. 1997. Molecular characterisation of the 3′-end of the astrovirus genome. Arch. Virol. 142:699-706.
    • (1997) Arch. Virol. , vol.142 , pp. 699-706
    • Monceyron, C.1    Grinde, B.2    Jonassen, T.Ø.3
  • 37
    • 0000880281 scopus 로고    scopus 로고
    • Astroviruses (Astroviridae)
    • A. Granoff and R. G. Webster (ed.). Academic Press Ltd., London, United Kingdom
    • Monroe, S. S. 1999. Astroviruses (Astroviridae), p. 104-108. In A. Granoff and R. G. Webster (ed.), Encyclopedia of virology, 2nd ed., vol. 1. Academic Press Ltd., London, United Kingdom.
    • (1999) Encyclopedia of Virology, 2nd Ed. , vol.1 , pp. 104-108
    • Monroe, S.S.1
  • 39
    • 0034092645 scopus 로고    scopus 로고
    • Epidemiology of astrovirus infection in young children hospitalized with acute gastroenteritis in Melbourne, Australia, over a period of four consecutive years, 1995 to 1998
    • Mustapha, H., E. A. Palombo, and R. F. Bishop. 2000. Epidemiology of astrovirus infection in young children hospitalized with acute gastroenteritis in Melbourne, Australia, over a period of four consecutive years, 1995 to 1998. J. Clin. Microbiol. 38:1058-1062.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1058-1062
    • Mustapha, H.1    Palombo, E.A.2    Bishop, R.F.3
  • 40
    • 0028780240 scopus 로고
    • Viruses in bathing waters
    • Myint, S., R. Manley, and D. Cubitt. 1994. Viruses in bathing waters. Lancet 343:1640-1641.
    • (1994) Lancet , vol.343 , pp. 1640-1641
    • Myint, S.1    Manley, R.2    Cubitt, D.3
  • 42
    • 0002511466 scopus 로고    scopus 로고
    • GeneDoc: Analysis and visualisation of genetic variation
    • Nicholas, K. B., H. B. J. Nicholas, and D. W. I. Deerfield. 1997. GeneDoc: analysis and visualisation of genetic variation. EMBNEW News 4:14.
    • (1997) EMBNEW News , vol.4 , pp. 14
    • Nicholas, K.B.1    Nicholas, H.B.J.2    Deerfield, D.W.I.3
  • 43
    • 0034942558 scopus 로고    scopus 로고
    • Quartet-mapping, a generalization of the likelihood-mapping procedure
    • Nieselt-Struwe, K., and A. von Haeseler. 2001. Quartet-mapping, a generalization of the likelihood-mapping procedure. Mol. Biol. Evol. 18:1204-1219.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1204-1219
    • Nieselt-Struwe, K.1    Von Haeseler, A.2
  • 44
    • 0028086269 scopus 로고
    • Identification of astrovirus serotypes from children treated at the Hospitals for Sick Children
    • Noel, J., and D. Cubitt. 1994. Identification of astrovirus serotypes from children treated at the Hospitals for Sick Children. Epidemiol. Infect. 113:153-159.
    • (1994) Epidemiol. Infect. , vol.113 , pp. 153-159
    • Noel, J.1    Cubitt, D.2
  • 45
    • 0028922802 scopus 로고
    • Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing
    • Noel, J. S., T. W. Lee, J. B. Kurtz, R. I. Glass, and S. S. Monroe. 1995. Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J. Clin. Microbiol. 33:797-801.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 797-801
    • Noel, J.S.1    Lee, T.W.2    Kurtz, J.B.3    Glass, R.I.4    Monroe, S.S.5
  • 46
    • 0035093927 scopus 로고    scopus 로고
    • Molecular characterization of human astroviruses in Germany
    • Oh, D., and E. Schreier. 2001. Molecular characterization of human astroviruses in Germany. Arch. Virol. 146:443-455.
    • (2001) Arch. Virol. , vol.146 , pp. 443-455
    • Oh, D.1    Schreier, E.2
  • 48
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page, R. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Applic. Biosci. 12:357-358.
    • (1996) Comput. Applic. Biosci. , vol.12 , pp. 357-358
    • Page, R.1
  • 49
    • 0029895985 scopus 로고    scopus 로고
    • Annual incidence, serotype distribution, and genetic diversity of human astrovirus isolates from hospitalized children in Melbourne, Australia
    • Palombo, E. A., and R. F. Bishop. 1996. Annual incidence, serotype distribution, and genetic diversity of human astrovirus isolates from hospitalized children in Melbourne, Australia. J. Clin. Microbiol. 34:1750-1753.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 1750-1753
    • Palombo, E.A.1    Bishop, R.F.2
  • 50
    • 0035192868 scopus 로고    scopus 로고
    • Genetic analysis of hepatitis A virus strains recovered from the environment and from patients with acute hepatitis
    • Pina, S., M. Buti, R. Jardí, P. Clemente-Casares, J. Jofre, and R. Girones. 2001. Genetic analysis of hepatitis A virus strains recovered from the environment and from patients with acute hepatitis. J. Gen. Virol. 82:2955-2963.
    • (2001) J. Gen. Virol. , vol.82 , pp. 2955-2963
    • Pina, S.1    Buti, M.2    Jardí, R.3    Clemente-Casares, P.4    Jofre, J.5    Girones, R.6
  • 53
    • 0036136488 scopus 로고    scopus 로고
    • Cryptosporidium parvum mixed genotypes detected by PCR-restriction fragment length polymorphism analysis
    • Reed, C., G. D. Sturbaum, P. J. Hoover, and C. R. Sterling. 2002. Cryptosporidium parvum mixed genotypes detected by PCR-restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 68:427-429.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 427-429
    • Reed, C.1    Sturbaum, G.D.2    Hoover, P.J.3    Sterling, C.R.4
  • 58
    • 0031002417 scopus 로고    scopus 로고
    • Likelihood-mapping: A simple method to visualize phylogenetic content of sequence alignment
    • Strimmer, K., and A. von Haeseler. 1997. Likelihood-mapping: a simple method to visualize phylogenetic content of sequence alignment. Proc. Natl. Acad. Sci. USA 94:6815-6819.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6815-6819
    • Strimmer, K.1    Von Haeseler, A.2
  • 59
    • 0030844498 scopus 로고    scopus 로고
    • Propagation of human astroviruses in the PLC/PRF/5 hepatoma cell line
    • Taylor, M. B., W. O. K. Grabow, and W. D. Cubitt. 1997. Propagation of human astroviruses in the PLC/PRF/5 hepatoma cell line. J. Virol. Methods 67:13-18.
    • (1997) J. Virol. Methods , vol.67 , pp. 13-18
    • Taylor, M.B.1    Grabow, W.O.K.2    Cubitt, W.D.3
  • 60
    • 0035012515 scopus 로고    scopus 로고
    • The occurrence of hepatitis A and astroviruses in selected river and dam waters in South Africa
    • Taylor, M. B., N. Cox, M. A. Vrey, and W. O. K. Grabow. 2001. The occurrence of hepatitis A and astroviruses in selected river and dam waters in South Africa. Water Res. 35:2653-2660.
    • (2001) Water Res. , vol.35 , pp. 2653-2660
    • Taylor, M.B.1    Cox, N.2    Vrey, M.A.3    Grabow, W.O.K.4
  • 61
    • 0034984705 scopus 로고    scopus 로고
    • Characterisation of a South African human astrovirus as type 8 by antigenic and genetic analyses
    • Taylor, M. B., J. Walter, T. Berke, W. D. Cubitt, D. K. Mitchell, and D. O. Matson. 2001. Characterisation of a South African human astrovirus as type 8 by antigenic and genetic analyses. J. Med. Virol. 64:256-261.
    • (2001) J. Med. Virol. , vol.64 , pp. 256-261
    • Taylor, M.B.1    Walter, J.2    Berke, T.3    Cubitt, W.D.4    Mitchell, D.K.5    Matson, D.O.6
  • 62
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 63
    • 0034127461 scopus 로고    scopus 로고
    • Role of astroviruses in childhood diarrhea
    • Walter, J. E., and D. K. Mitchell. 2000. Role of astroviruses in childhood diarrhea. Curr. Opin. Pediatr. 12:275-279.
    • (2000) Curr. Opin. Pediatr. , vol.12 , pp. 275-279
    • Walter, J.E.1    Mitchell, D.K.2
  • 66
    • 0029003088 scopus 로고
    • Detection of small round structured viruses by enzymatic amplification
    • Wolfaardt, M., C. L. Moe, and W. O. K. Grabow. 1995. Detection of small round structured viruses by enzymatic amplification. Water Sci. Technol. 31:375-382.
    • (1995) Water Sci. Technol. , vol.31 , pp. 375-382
    • Wolfaardt, M.1    Moe, C.L.2    Grabow, W.O.K.3


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