Detection and genetic differentiation of human astroviruses: Phylogenetic grouping varies by coding region

Archives of Virology

Volumn 142, Issue 7, 1997, Pages 1323-1334

  Belliot, G ^a,b   Laveran, H ^a   Monroe, S S ^b,c  

^a ONERA   (France)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^c CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

ARTICLE; CLASSIFICATION; GENETICS; HUMAN; MAMASTROVIRUS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POLYMERASE CHAIN REACTION; SEROTYPING; VIRUS GENOME;

GENOME, VIRAL; HUMANS; MAMASTROVIRUS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; POLYMERASE CHAIN REACTION; SEROTYPING; VIRAL NONSTRUCTURAL PROTEINS;

ANIMALIA; ASTROVIRIDAE; RNA VIRUSES;

EID: 0030741955     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050163     Document Type: Article

References (43)

1. Ando T, Monroe SS, Gentsch JR, Jin Q, Lewis DC, Glass RI (1995) Detection and differentiation of antigenically distinct small round-structured viruses (Norwalk-like viruses) by reverse transcription-PCR and Southern hybridization. J Clin Microbiol 33: 64-71
2. Belliot G, Laveran H, Monroe SS (1997) Capsid protein composition of reference strains and wild isolates of human astroviruses. Virus Res 49: 49-57
3. Belliot G, Laveran H, Monroe SS (1997) Outbreak of gastroenteritis in military recruits associated with serotype 3 astrovirus infection. J Med Virol 51: 101-106
4. Blacklow NR, Greenberg HB (1991) Viral gastroenteritis. N Engl J Med 325: 252-264
5. Caul EO, Appleton H (1982) The electron microscopical and physical characteristics of small round human fecal viruses: an interim scheme for classification. J Med Virol 9: 257-265
6. Cruz JR, Bartlatt AV, Herrmann JE, Caceres P, Blacklow NR, Cano F (1992) Astrovirus associated diarrhea among Guatemalan ambulatory rural children. J Clin Microbiol 30: 1140-1144
7. Dear S, Staden R (1991) A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res 19: 3907-3911
8. Genetics Computer Group (1994) Program manual for the Wisconsin package, version 8. Genetics Computer Group, Madison
9. Grohmann GS, Glass RI, Pereira HG, Monroe SS, Hightower AW, Weber R, Bryan RT (1993) Enteric viruses and diarrhea in HIV-infected patients. N Engl J Med 329: 14-20
10. Herring AJ, Gray EW, Snodgrass DR (1981) Purification and characterization of ovine astrovirus. J Gen Virol 53: 47-55
11. Herrmann JE, Blacklow NR, Perron-Henry DM, Clements E, Taylor DN, Echeverria P (1988) Incidence of enteric adenoviruses among children in Thailand and the significance of these viruses in gastroenteritis. J Clin Microbiol 26: 1783-1786
12. Herrmann JE, Hudson RW, Perron-Henry DM, Kurtz JB, Blacklow NR (1988) Antigenic characterization of cell-cultivated astrovirus serotypes and development of astrovirus specific monoclonal antibodies. J Infect Dis 158: 182-185
13. Jiang B, Monroe SS, Koonin EV, Stine SE, Glass RI (1993) RNA sequence of astrovirus: Distinctive genomic organization and a putative retrovirus-like ribosomal frameshifting signal that directs the viral replicase synthesis. Proc Natl Acad Sci USA 90: 10539-10543
14. Jiang X, Wang J, Graham DY, Estes MK (1992) Detection of Norwalk virus in stool by polymerase chain reaction. J Clin Microbiol 30: 2529-2534
15. Jonassen TO, Monceyron C, Lee TW, Kurtz JB, Grinde B (1995) Detection of all serotypes of human astrovirus by the polymerase chain reaction. J Virol Methods 52: 327-334
16. Kurtz JB, Lee TW (1984) Human astrovirus serotypes (letter). Lancet ii: 1405
17. Lee TW, Kurtz JB (1994) Prevalence of human astrovirus serotypes in the Oxford region 1976-1992, with evidence for two new serotypes. Epidemiol Infect 112: 187-193
18. Lew JF, Glass RI, Petric M, LeBaron CW, Hammond GW, Miller SE, Robinson C, Boutilier J, Riepenhoff-Talty M, Payne CM, Franklin R, Oshiro LS, Jaqua M-J (1990) Six year retrospective surveillance of gastroenteritis viruses identified at ten electron microscopy centers in the United States and Canada. Pediatr Infect Dis J9: 709-714
19. Lewis DC, Lightfoot NF, Cubitt WD, Wilson SA (1989) Outbreaks of astrovirus type 1 and rotavirus gastroenteritis in a geriatric in-patient population. J Hosp Infect 14: 9-14
20. Lewis TL, Greenberg HB, Herrmann JE, Smith LS, Matsui SM (1994) Analysis of astrovirus serotype 1 RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein. J Virol 68: 77-83
21. Lewis TL, Matsui SM (1995) An astrovirus frameshift signal induces ribosomal frameshifting in vitro. Arch Virol 140: 1127-1135
22. Madeley CR, Cosgrove BP (1975) 28 nm particles in faeces in infantile gastroenteritis Lancet ii: 451-452
23. Marczinke B, Bloys AJ, Brown TDK, Willcocks MM, Carter MJ, Brierley I (1994) The human astrovirus RNA-dependent RNA polymerase coding region is expressed by ribosomal frameshifting. J Virol 68: 5588-5595
24. Midthun K, Greenberg HB, Kurtz JB, Gary GW, Lin F-Y, Kapikian AZ (1993) Characterization and seroepidemiology of a type 5 astrovirus associated with an outbreak of gastroenteritis in Marin County, California. J Clin Microbiol 31: 955-962
25. Mitchell DK, Monroe SS, Jiang X, Matson DO, Glass RI, Pickering LK (1995) Virologic features of an astrovirus diarrhea outbreak in day care center revealed by reverse transcription-polymerase chain reaction. J Infect Dis 172: 1437-1444
26. Mitchell DK, Van R, Morrow AL, Monroe SS, Glass RI, Pickering LK (1993) Outbreaks of astrovirus gastroenteritis in day care centers. J Pediatr 123: 725-732
27. Moe CL, Allen JR, Monroe SS, Gary HE Jr, Humphrey CD, Herrmann JE, Blacklow NR, Carcamo C, Koch M, Kim K-H, Glass RI (1991) Detection of astrovirus in pediatric stool samples by immunoassay and RNA probe. J Clin Microbiol 29: 2390-2395
28. Monroe SS, Glass RI, Noah N, Flewett TH, Caul EO, Ashton CI, Curry A, Field AM, Madeley R, Pead PJ (1991) Electronmicroscopic reporting of gastrointestinal viruses in the United Kingdom, 1985-87. J Med Virol 33: 193-198
29. Monroe SS, Jiang B, Stine SE, Koopmans M, Glass RI (1993) Subgenomic RNA sequence of human astrovirus supports classification of Astroviridae as a new family of RNA viruses. J Virol 67: 3611-3614
30. Monroe SS, Stine SE, Gorelkin L, Herrmann JE, Blacklow NR, Glass RI (1991) Temporal synthesis of proteins and RNAs during human astrovirus infection of cultured cells. J Virol 65: 641-648
31. Noel JS, Lee TW, Kurtz JB, Glass RI, Monroe SS (1995) Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J Clin Microbiol 33: 797-801
32. Norcott JP, Green J, Lewis D, Estes MK, Barlow KL, Brown DW (1994) Genomic diversity of small round structured viruses in the United Kingdom. J Med Virol 44: 280-286
33. Oishi I, Yamazaki K, Kimoto T, Minekawa Y, Utagawa E, Yamazaki S, Inouye S, Grohmann GS, Monroe SS, Stine S, Carcamo C, Ando T, Glass RI (1994) A large outbreak of acute gastroenteritis associated with astrovirus among students and teachers in Osaka, Japan. J Infect Dis 170: 439-443
34. Pinto RM, Abad FX, Gajardo R, Bosch A (1996) Detection of infectious astroviruses in water. Appl Environ Microbiol 62: 3073
35. Risco C, Carrascosa JL, Pedregosa AM, Humphrey CD, Sanchez-Fauquier A (1995) Ultrastructure of human astrovirus serotype 2. J Gen Virol 76: 2075-2080
36. Saito K, Ushijima H, Nishio O, Oseto M, Motohiro H, Ueda Y, Takagi M, Nakaya S, Ando T, Glass R, Zaiman K (1995) Detection of astroviruses from stool samples in Japan using reverse transcription and polymerase chain reaction amplification. Microbiol Immunol 39: 825-828
37. Sanchez-Fauquier A, Carrascosa AL, Carrascosa JL, Otero A, Glass RI, Lopez JA, San Martin C, Melero JA (1994) Characterization of a human astrovirus serotype 2 structural protein (VP26) that contains an epitope involved in virus neutralization. Virology 201: 312-320
38. Shimizu M, Shirai J, Narita M, Yamane T (1990) Cytopathic astrovirus isolated from porcine acute gastroenteritis in an established cell line derived from porcine embryonic kidney. J Clin Microbiol 28: 201-206
39. Swofford DL (1991) PAUP: Phylogenetic Analysis Using Parsimony, Version 3.0s. Illinois Natural History Survey, Champaign, 146 pages
40. Wang J, Jiang X, Madore HP, Gray J, Desselberger U, Ando T, Seto Y, Oishi I, Lew JF, Green KY, Estes MK (1994) Sequence diversity of small, round-structured viruses in the Norwalk virus group. J Virol 68: 5982-5990
41. Willcocks MM, Brown TDK, Madeley CR, Carter MJ (1994) The complete sequence of a human astrovirus. J Gen Virol 75: 1785-1788
42. Willcocks MM, Carter MJ, Laidler FR, Madeley CR (1990) Growth and characterisation of human faecal astrovirus in a continuous cell line. Arch Virol 113: 73-81
43. Zoll GJ, Melchers WJ, Kopecka H, Jambroes G, van der Poel HJ, Galama JM (1992) General primer-mediated polymerase chain reaction for detection of enteroviruses: application for diagnostic routine and persistent infections. J Clin Microbiol 30: 160-165