Automated side-chain model building and sequence assignment by template matching

Acta Crystallographica - Section D Biological Crystallography

Volumn 59, Issue 1, 2003, Pages 45-49

  Terwilliger, Thomas C ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE FRAGMENT;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; ELECTRICITY; METHODOLOGY; PROTEIN CONFORMATION; PROTEIN DATABASE; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; X RAY CRYSTALLOGRAPHY;

ALGORITHMS; AMINO ACID SEQUENCE; AUTOMATION; CRYSTALLOGRAPHY, X-RAY; DATABASES, PROTEIN; ELECTROSTATICS; MODELS, CHEMICAL; MODELS, MOLECULAR; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SOFTWARE;

EID: 0037242985     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444902018048     Document Type: Article

References (21)

1. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
2. Chen, C. C. H., Kim, A., Zhang, H., Howard, A. J., Sheldrick, G. M., Dunaway-Mariano, D. & Herzberg, O. (2000). Am. Crystallogr. Assoc. Annu. Meet., Abstract 02.06.03.
3. Dunbrack, R. L. & Cohen, F. E. (1997). Protein Sci. 6, 1661-1681.
4. Fitz-Gibbon, S. T., Ladner, H., Kim, U. J., Stetter, K. O., Simon, M. I. & Miller, J. H. (2002). Proc. Natl Acad. Sci. USA, 99, 984-989.
5. Hobohm, U., Scharf, M. & Schneider, R. (1993). Protein Sci. 1, 409-417.
6. Holton, T., Ioerger, T. R., Christopher, J. A. & Sacchettini, J. C. (2000). Acta Cryst. D56, 722-734.
7. Huber, A. H., Nelson, W. J. & Weis, W. I. (1997). Cell, 90, 871-882.
8. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
9. Levitt, D. G. (2001). Acta Cryst. D57, 1013-1019.
10. Lovell, S. C., Word, J. M., Richardson, J. S. & Richardson, D. C. (2000). Proteins Struct. Funct. Genet. 40, 389-408.
11. Morris, R. J., Perrakis, A. & Lamzin, V. S. (2002). Acta Cryst. D58, 968-975.
12. Oldfield, T. (2002). Acta Cryst. D58, 487-493.
13. Pavelcik, F., Zelinka, J. & Otwinowski, Z. (2002). Acta Cryst. D58, 275-283.
14. Peat, T. S., Newman, J., Waldo, G. S., Berendzen, J. & Terwilliger, T. C. (1998). Structure, 6, 1207-1214.
15. Pédelacq, J.-D., Piltch, E., Liong, E. C., Berendzen, J., Kim, C.-Y., Rho, B.-S., Park, M. S., Terwilliger, T. C. & Waldo, G. S. (2002). Nature Biotechnol. 20, 927-932.
16. Ponder, J. W. & Richards, F. M. (1987). J. Mol. Biol. 193, 775-791.
17. Rozwarski, D. A., Diederichs, K., Hecht, R., Boone, T. & Karplus, P. A. (1996). Proteins, 26, 304-313.
18. Skinner, M. M., Zhang, H., Leschnitzer, D. H., Guan, Y., Bellamy, H., Sweet, R. M., Gray, C. W., Konings, R. N. H., Wang, A. H.-J. & Terwilliger, T. C. (1994). Proc. Natl Acad. Sci. USA, 91, 2071-2075.
19. Terwilliger, T. C. (2000). Acta Cryst. D56, 965-972.
20. Terwilliger, T. C. (2003). Acta Cryst. D59, 38-44.
21. Yarbrough, D., Wachter, R. M., Kallio, K., Matz, M. V. & Remington, S. J. (2001). Proc. Natl Acad. Sci. USA, 98, 462-467.