Paenibacillus kribbensis sp. nov. and Paenibacillus terrae sp. nov., bioflocculants for efficient harvesting of algal cells

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 1, 2003, Pages 295-301

  Yoon, Jung Hoon ^a   Oh, Hee Mock ^a   Yoon, Byung Dae ^a   Kang, Kook Hee ^b   Park, Yong Ha ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Sungkyunkwan University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DIAMINOPIMELIC ACID; DNA; DNA 16S; FATTY ACID; GUANINE; MENAQUINONE; PEPTIDOGLYCAN;

ALGAL CELL CULTURE; ARTICLE; BACTERIAL CELL WALL; BACTERIAL FLAGELLUM; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA DETERMINATION; ENDOSPORE-FORMING RODS AND COCCI; FLOCCULATION; GENE CLUSTER; GENETIC SIMILARITY; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS DURUS; PAENIBACILLUS KRIBBENSIS; PAENIBACILLUS TERRAE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SOIL ANALYSIS; STRAIN DIFFERENCE;

ALGAE; BACILLUS; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLOCCULATION; KOREA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

ALGAE; BACTERIA (MICROORGANISMS); PAENIBACILLUS; PAENIBACILLUS DURUS; PAENIBACILLUS JAMILAE; PAENIBACILLUS KRIBBENSIS; PAENIBACILLUS PEORIAE; PAENIBACILLUS POLYMYXA; POLYMYXA; POSIBACTERIA; PROKARYOTA;

EID: 0037215938     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02108-0     Document Type: Article

References (34)

1. Aguilera, M., Monteoliva-Sánchez, M., Suárez, A., Guerra, V., Lizama, C., Bennasar, A. & Ramos-Cormenzana, A. (2001). Paenibacillus jamilae sp. nov., an exopolysaccharide-producing bacterium able to grow in olive-mill wastewater. Int J Syst Evol Microbiol 51, 1687-1692.
2. Ash, C., Priest, F. G. & Collins, M. D. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
3. Chung, Y. R., Kim, C. H., Hwang, I. & Chun, J. (2000). Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound. Int J Syst Evol Microbiol 50, 1495-1500.
4. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
5. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
6. Elo, S., Suominen, I., Kämpfer, P., Juhanoja, J., Salkinoja-Salonen, M. & Haahtela, K. (2001). Paenibacillus borealis sp. nov., a nitrogen-fixing species isolated from spruce forest humus in Finland. Int J Syst Evol Microbiol 51, 535-545.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
9. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Department of Genetics, University of Washington, Seattle, USA.
10. Heyndrickx, M., Vandemeulebroecke, K. Scheldeman, P. & 7 other authors (1995). Paenibacillus (formerly Bacillus) gordonae (Pichinoty et al. 1986) Ash et al. 1994 is a later subjective synonym of Paenibacillus (formerly Bacillus) validus (Nakamura 1984) Ash et al. 1994: emended description of P. validus. Int J Syst Bacteriol 45, 661-669.
11. Heyndrickx, M., Vandemeulebroecke, K., Scheldeman, P., Kersters, K., De Vos, P., Logan, N. A., Aziz, A. M., Ali, N. & Berkeley, R. C. W. (1996). A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae. Int J Syst Bacteriol 46, 988-1003.
12. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
13. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
14. Komagata, K. & Suzuki, K. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-203.
15. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
16. Nakamura, L. K. (1987). Bacillus alginolyticus sp. nov. and Bacillus chondroitinus sp. nov., two alginate-degrading species. Int J Syst Bacteriol 37, 284-286.
17. Pettersson, B., Rippere, K. E., Yousten, A. A. & Priest, F. G. (1999). Transfer of Bacillus lentimorbus and Bacillus popilliae to the genus Paenibacillus with emended descriptions of Paenibacillus lentimorbus comb. nov. and Paenibacillus popilliae comb. nov. Int J Syst Bacteriol 49, 531-540.
18. Priest, F. G. (1977). Extracellular enzyme synthesis in the genus Bacillus. Bacteriol Rev 41, 711-753.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Seo, W.-T., Kahng, G.-G., Nam, S.-H., Choi, S.-D., Suh, H.-H., Kim, S.-W. & Park, Y.-H. (1999). Isolation and characterization of a novel exopolysaccharide-producing Paenibacillus sp. WN9 KCTC 8951P. J Microbiol Biotechnol 9, 820-825.
21. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997a). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
22. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997b). Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. Int J Syst Bacteriol 47, 299-306.
23. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
24. Slepecky, R. & Hemphill, E. (1991). The genus Bacillus - nonmedical. In The Prokaryotes, vol. 2, pp. 1663-1696. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer-Verlag.
25. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
26. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
27. Tcherpakov, M., Ben-Jacob, E. & Gutnick, D. L. (1999). Paenibacillus dendritiformis sp. nov., proposal for a new pattern-forming species and its localization within a phylogenetic cluster. Int J Syst Bacteriol 49, 239-246.
28. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
29. Van der Maarel, M. J. E. C., Veen, A. & Wijbenga, D. J. (2000). Paenibacillus granivorans sp. nov., a new Paenibacillus species which degrades native potato starch granules. Syst Appl Microbiol 23, 344-348.
30. Wainø, M., Tindall, B. J., Schumann, P. & Ingvorsen, K. (1999). Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49, 821-831.
31. Wayne, L. G., Brenner, D. J. Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
32. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
33. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998a). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187-194.
34. Yoon, J.-H., Yim, D. K., Lee, J.-S., Shin, K.-S., Sato, H. H., Lee, S. T., Park, Y. K. & Park, Y.-H. (1998b). Paenibacillus campinasensis sp. nov., a cyclodextrin-producing bacterium isolated in Brazil. Int J Syst Bacteriol 48, 833-837.