Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov.

International Journal of Systematic Bacteriology

Volumn 47, Issue 2, 1997, Pages 299-306

  Shida, Osamu ^a   Takagi, Hiroaki ^a   Kadowaki, Kiyoshi ^a   Nakamura, Lawrence K ^c   Komagata, Kazuo ^b  

^a Research Laboratory   (Japan)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^c NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACILLUS; BACTERIAL METABOLISM; BASE PAIRING; CHEMOTAXONOMY; GENE CLUSTER; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC HETEROGENEITY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RNA GENE;

PAENIBACILLUS AMYLOLYTICUS; PAENIBACILLUS CHIBENSIS; PAENIBACILLUS ILLINOISENSIS;

EID: 0030937122     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-47-2-299     Document Type: Article

References (21)

1. Alexander, B., and F. G. Priest. 1989. Bacillus glucanolyticus, a new species that degrades a variety of β-glucans. Int. J. Syst. Bacteriol. 39:112-115.
2. Ash, C., F. G. Priest, and M. D. Collins. 1993. Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks, and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64:253-260.
3. Claus, D., and R. C. W. Berkeley. 1986. Genus Bacillus Cohn 1872, p. 1105-1140. In P. H. A. Sneath, N. S. Mair, M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 2. The Williams and Wilkins Co., Baltimore, Md.
4. Ezaki, T., Y. Hashimoto, and E. Yabuuchi. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39:224-229.
5. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
6. Fox, G. E., J. Wisotzkey, and P. Jurtshuk, Jr. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42:166-170.
7. Gordon, R. E., W. C. Hynes, and C. H. N. Pang. 1973. The genus Bacillus. Agricultural Handbook no. 427. U.S. Department of Agriculture, Washington, D.C.
8. Heyndrickx, M., K. Vandemeulebroecke, P. Scheldeman, K. Kersters, P. De Vos, N. A. Logan, A. M. Aziz, N. Ali, and R. C. W. Berkeley. 1996. A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended description of P. lautus and P. peoriae. Int. J. Syst. Bacteriol. 46: 988-1003.
9. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
10. Komagata, K., and K. Suzuki. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol. 19:161-207.
11. Nakamura, L. K., and J. Swezey. 1983. Taxonomy of Bacillus circulans Jordan 1890: base composition and reassociation of deoxyribonucleic acid. Int. J. Syst. Bacteriol. 33:46-52.
12. Nakamura, L. K., and J. Swezey. 1983. Deoxyribonucleic acid relatedness of Bacillus circulans Jordan 1890 strains. Int. J. Syst. Bacteriol. 33:703-708.
13. Nakamura, L. K. 1984. Bacillus amylolyticus sp. nov., nom. rev., Bacillus lautus sp. nov., nom. rev., Bacillus pabuli sp. nov., nom. rev., and Bacillus validus sp. nov., nom. rev. Int. J. Syst. Bacteriol. 34:224-226.
14. Nakamura, L. K. 1987. Bacillus alginolyticus sp. nov. and Bacillus chondroitinus sp. nov., two alginate-degrading species. Int. J. Syst. Bacteriol. 37:284-286.
15. Priest, F. G., M. Goodfellow, and C. Todd. 1988. A numerical classification of the genus Bacillus. J. Gen. Microbiol. 134:1847-1882.
16. Saito, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
17. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
18. Shida, O., H. Takagi, K. Kadowaki, and K. Komagata. 1996. Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int. J. Syst. Bacteriol. 46:939-946.
19. Shida, O., H. Takagi, K. Kadowaki, L. K. Nakamura, and K. Komagata. 1997. Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int. J. Syst. Bacteriol. 47:289-298.
20. Takagi, H., O. Shida, K. Kadowaki, K. Komagata, and S. Udaka. 1993. Characterization of Bacillus brevis with descriptions of Bacillus migulanus sp. nov., Bacillus choshinensis sp. nov., Bacillus parabrevis sp. nov., and Bacillus galactophilus sp. nov. Int. J. Syst. Bacteriol. 43:221-231.
21. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.