Uphill energy trapping by reaction center in bacterial photosynthesis: Charge separation unistep from antenna excitation, virtually mediated by special-pair excitation

Journal of Physical Chemistry B

Volumn 106, Issue 51, 2002, Pages 13370-13383

  Sumi, Hitoshi ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PHOTOSYNTHESIS; CHARGE SEPARATION; ENERGY TRAPPING; SUPEREXCHANGE MECHANISM;

BACTERIA; CALCULATIONS; CHEMICAL ACTIVATION; ELECTRON TRAPS; ENERGY TRANSFER; GROUND STATE; PHONONS; PIGMENTS; QUANTUM THEORY; RATE CONSTANTS; TEMPERATURE;

PHOTOSYNTHESIS;

EID: 0037180848     PISSN: 10895647     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp021716e     Document Type: Article

References (68)

1. (a) Fleming, G. R.; van Grondelle, R. Phys. Today 1994, 47, 48.
2. (b) Hu, X.; Schulten, K. Phys. Today 1997, 50, 28.
3. (c) Cogdell, R. J.; Lindsay, J. G. New Phytol. 2000, 145, 167.
4. (a) Deisenhofer, J.; Epp, O.; Miki, K.; Huber, R.; Michel, H. J. Mol. Biol. 1984, 180, 385.
5. (b) Allen, J. P.; Feher, G.; Yeates, T. O.; Komiya, H.; Rees, D. C. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 5730, 6162.
6. (c) Hoff, A. J.; Deisenhofer, J. Phys. Rep. 1997, 287, 1.
7. (a) McDermott, G.; Prince, S. M.; Freer, A. A.; Hawthornthwaite-Lawless, A. M.; Papiz, M. Z.; Cogdell, R. J.; Isaacs, N. W. Nature 1995, 374, 512.
8. (b) Koepke, J.; Hu, X.; Muenke, C.; Schulten, K.; Michel, H. Structure 1996, 4, 581.
9. Germeroth, L.; Lottspeich, F.; Roberts, B.; Michel, H. Biochemistry 1993, 32, 5615.
10. McLuskey, K.; Prince, S. M.; Cogdell, R. J.; Isaacs, N. W. Biochemistry 2001, 40, 8783.
11. Karrasch, S.; Bullough, P. A.; Ghosh, R. EMBO J. 1995, 14, 631.
12. (a) Walz, T.; Ghosh, R. J. Mol. Biol. 1997, 265, 107.
13. Ikeda-Yamazaki, I.; Odahara, T.; Mitsuoka, K.; Fujiyoshi, Y.; Murata K. FEBS Lett. 1998, 425, 505.
14. (c) Stahlberg, H.; Dubochet, J.; Vogel, H.; Ghosh, R. J. Mol. Biol. 1998, 282, 819.
15. (d) Walz, T.; Jamieson, S. J.; Bowers, C. M.; Bullough, P. A, Hunter, C. N. J. Mol. Biol. 1998, 282, 833.
16. (e) Qian, P.; Yagura, T.; Koyama, Y.; Cogdell, R. J. Plant Cell Physiol. 2000, 41, 1347.
17. (a) Jungas, C.; Ranck, J.-L.; Rigaud, J.-L.; Joliot, P.; Verméglio, A. EMBO J. 1999, 18, 534.
18. (b) Francia, F.; Wang, J.; Venturoli, G.; Melandri, B. A.; Barz, W. P.; Oesterhelt, D. Biochemistry 1999, 38, 6834.
19. (c) Leupold, D.; Voigt, B.; Beeken, W.; Stiel, H. FEBS Lett. 2000, 480, 73.
20. (a) Schmidt, S.; Arlt, T.; Hamm, P.; Huber, H.; Nägele, T.; Wachtveitl, J.; Meyer, M.; Scheer, H.; Zinth, W. Chem. Phys. Lett. 1994, 223, 116.
21. (b) Zinth, M.; Arlt, T.; Wachtveitl, J. Ber. Bunsen-Ges. Phys. Chem. 1996, 100, 1962.
22. (c) Spörlein, S.; Zinth, W.; Meyer, M.; Scheer, H.; Wachtveitl, J. Chem. Phys. Lett. 2000, 322, 454.
23. (a) Hu, X.; Ritz, T.; Damjanović, A.; Schulten, K. J. Phys. Chem. B 1997, 101, 3854.
24. (b) Hu, X.; Schulten, K. Biophys. J. 1998, 75, 683.
25. (c) Hu, X.; Damjanović, A.; Ritz, T.; Schulten, K. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 5935.
26. (d) Ritz, T.; Park, S.; Schulten, K. J. Phys. Chem. B 2001, 105, 8259.
27. Freiberg, A. In Anoxygenic Photosynthetic Bacteria; Blankenship, R. E., Madigan, M. T., Bauer, C. E., Eds.; Kluwer Academic Publishers: Dordrecht, Netherlands, 1995; pp 385-398.
28. Trissl, H.-W. Photosynth. Res. 1993, 35, 247.
29. (a) Holt, A. S, Clayton, R. K. Photochem. Photobiol. 1965, 4, 829.
30. (b) Kleinherenbrink, F. A. M.; Deinum, G.; Otte, S. C. M.; Hoff, A. J.; Amesz, J. Biochim. Biophys. Acta 1992, 1099, 175.
31. Permentier, H. P.; Neerken, S.; Overmann, J.; Amesz, J. Biochemistry 2001, 40, 5573.
32. Beekman, L. M. P.; van Mourik, F.; Jones, M. R.; Visser, M.; Hunter, C. N.; van Grondelle, R. Biochemistry 1994, 33, 3143.
33. (a) Kleinherenbrink, F. A. M.; Cheng, P.; Amesz, J.; Blankenship, R. E. Photochem. Photobiol. 1993, 57, 13.
34. (b) Timpmann, K.; Freiberg, A.; Sundström, V. Chem. Phys. 1995, 194, 275.
35. (a) Visscher, K. J.; Bergström, H.; Sundström, V.; Hunter, C. N.; van Grondelle, R. Photosynth. Res. 1989, 22, 211.
36. (b) Kennis, J. T. M.; Aartsma, T. J.; Amesz, J. Biochim. Biophys. Acta 1994, 1188, 278.
37. (c) Kramer, H.; Deinum, G.; Gardiner, A. T.; Gogdell, R. J.; Francke, C.; Aartsma, T. J.; Amesz, J. Biochim. Biophys. Acta 1995, 1231, 33.
38. (d) Freiberg, A.; Allen, J. P.; Williams, J. C.; Woodbury, N. W. Photosynth. Res. 1996, 48, 309.
39. (e) Chiou, H. C.; Lin, S.; Blankenship, R. E. J. Phys. Chem. B 1997, 101, 4136.
40. (f) Permentier, H. P.; Neerken, S.; Schmidt, K. A.; Overmann, J.; Amesz, J. Biochem. Biophys. Acta 2000, 1460, 338.
41. (a) van Grondelle, R.; Dekker, J. P.; Gillbro, T.; Sundström, V. Biochim. Biophys. Acta 1994, 1187, 1.
42. (b) Sundström, V.; van Grondelle, R. In Anoxygenic Photosynthetic Bacteria; Blankenship, R. E., Madigan, M. T., Bauer, C. E., Eds. Kluwer Academic Publishers: Dordrecht, Netherlands, 1995; pp 349-372.
43. Kramers, H. A. Physica 1934, 1, 182.
44. (a) Sumi, H.; Kakitani, T. Chem. Phys. Lett. 1996, 252, 85.
45. (b) Sumi, H.; Kakitani, T. J. Phys. Chem. B 2001, 105, 9603.
46. Reddy, N. R. S.; Picorel, R.; Small, G. J. J. Phys. Chem. 1992, 96, 6458.
47. (b) Wu, H.-M.; Rätsep, M.; Jankowiak, R.; Cogdell, R. J.; Small, G. J. J. Phys. Chem. B 1998, 102, 4023.
48. (c) Rätsep, M.; Wu, H.-M.; Hayes, J. M.; Blankenship, R. E.; Cogdell, R. J.; Small, G. J. J. Phys. Chem. B 1998, 102, 4035.
49. Sumi, H. In Electron Transfer in Chemistry; Balzani, V., Ed.; Wiley-VCH: Weinheim, Germany, 2001; Vol. 1 (Principles, Theories, Techniques and Methods), p 64.
50. Toyozawa, Y. J. Phys. Soc. Jpn. 1976, 41, 400.
51. (b) Kotani, A.; Toyozawa, Y. J. Phys. Soc. Jpn. 1976, 41, 1699.
52. (c) Toyozawa, Y.; Kotani, A.; Sumi, A. J. Phys. Soc. Jpn. 1977, 42, 1495.
53. Lyle, P. A.; Kolaczkowski, S. V.; Small, G. L. J. Phys. Chem. 1993, 97, 6924.
54. Woodbury, N. W.; Allen, J. P. In Anoxygenic Photosynthetic Bacteria; Blankenship, R. E., Madigan, M. T., Bauer, C. E., Eds.; Kluwer Academic Publishers: Dordrecht, Netherlands, 1995; pp 527-557.
55. Ahn, J. S.; Kanematsu, Y.; Enomoto, M.; Kushida, T. Chem. Phys. Lett. 1995, 215, 336.
56. Nakashima, S.; Seike, K.; Nagasawa, Y.; Okada, T.; Sato, M.; Kohzuma, T. J. Chin. Chem. Soc. 2000, 47, 693
57. Nakashima, S.; Seike, K.; Nagasawa, Y.; Okada, T.; Sato, M.; Kohzuma, T. Chem. Phys. Lett. 2000, 331, 369.
58. Fleming, G. R.; Martin, J.-L.; Breton, J. Nature 1988, 333, 190.
59. (a) Novoderezhkin, V. I.; Razjivin, A. P. Photosynth. Res. 1994, 42, 9.
60. (b) Damjanović, A.; Ritz, T.; Schulten, K. Int. J. Quantum Chem. 2000, 77, 139.
61. Sumi, H. J. Phys. Chem. B 1999, 103, 252
62. Sumi, H. J. Lumin. 2000, 331, 396.
63. Sumi, H. Chem. Rec. 2001, 1, 480.
64. Mukai, K.; Abe, S.; Sumi, H. J. Phys. Chem. B 1999, 103, 6096
65. Mukai, K.; Abe, S.; Sumi, H. J. Lumin. 2000, 331, 818.
66. Mukai, K. Private communication, 2000.
67. Chang, C. H.; Hayashi, M.; Liang, K. K.; Chang, R.; Lin, S. H. J. Phys. Chem. B 2001, 105, 1216 and references therein.
68. Abramowitz, M.; Stegun, I. A. Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Tables; Dover: New York, 1965.