RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates

Proceedings of the National Academy of Sciences of the United States of America

Volumn 94, Issue 10, 1997, Pages 4982-4987

  Fredrick, Kurt ^a   Helmann, John D ^a  

^a Department of Population Medicine and Diagnostic Sciences   (United States)

Author keywords

Bacillus subtilis; flagellin; promoter; transcription

Indexed keywords

BACTERIAL ENZYME; HETERODUPLEX; RNA POLYMERASE; SIGMA FACTOR;

ARTICLE; BACILLUS SUBTILIS; DNA DEGRADATION; DNA TEMPLATE; ENZYME SUBUNIT; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FAMILY; RNA SYNTHESIS; TRANSCRIPTION INITIATION;

BACILLUS SUBTILIS; BASE SEQUENCE; BINDING SITES; DNA PRIMERS; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; FLAGELLIN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HETERODUPLEXES; POLYMERASE CHAIN REACTION; PROMOTER REGIONS (GENETICS); REGULATORY SEQUENCES, NUCLEIC ACID; RNA, MESSENGER; SIGMA FACTOR; TEMPLATES, GENETIC; TRANSCRIPTION, GENETIC;

EID: 0031000203     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.94.10.4982     Document Type: Article

References (60)

1. Helmann, J. D. (1994) in Transcription: Mechanisms and Regulation, eds. Conaway, R. C. & Conaway, J. W. (Raven, New York), Vol. 3, pp. 1-17.
2. Ishihama, A. (1993) J. Bacteriol. 175, 2483-2489.
3. Malan, T. P., Kolb, A., Buc, H. & McClure, W. R. (1984) J. Mol. Biol. 180, 881-909.
4. Herbert, M., Kolb, A. & Buc, H. (1986) Proc. Natl. Acad. Sci. USA 83, 2807-2811.
5. Menendez, M., Kolb, A. & Buc, H. (1987) EMBO J. 6, 4227-4234.
6. Li, M., Moyle, H. & Susskind, M. M. (1994) Science 263, 75-77.
7. Kumar, A., Grimes, B., Fujita, N., Makino, K., Malloch, R. A., Hayward, R. S. & Ishihama, A. (1994) J. Mol. Biol. 235, 405-413.
8. Baldus, J. M., Buckner, C. M. & Moran, C. P., Jr. (1995) Mol. Microbiol. 17, 281-290.
9. Malhotra, A., Severinova, E. & Darst, S. A. (1996) Cell 87, 127-136.
10. Juang, Y. & Helmann, J. D. (1994) J. Mol. Biol. 235, 1470-1488.
11. deHaseth, P. L. & Helmann, J. D. (1995) Mol. Microbiol. 16, 817-824.
12. Ozoline, O. N. & Tsyganov, M. A. (1995) Nucleic Acids Res. 23, 4533-4541.
13. McAllister, C. F. & Achberger, E. C. (1989) J. Biol. Chem. 264, 10451-10456.
14. Bracco, L., Kotlarz, D., Kolb, A., Diekmann, S. & Buc, H. (1989) EMBO J. 8, 4289-4296.
15. Hsu, L. M., Giannini, J. K., Leung, T. C. & Crosthwaite, F. C. (1991) Biochemistry 30, 813-822.
16. Sander, P., Langert, W. & Mueller, K. (1993) J. Biol. Chem. 268, 16907-16916.
17. Hirota, Y. & Ohyama, T. (1995) J. Mol. Biol. 254, 566-578.
18. Giladi, H., Murakami, K., Ishihama, A. & Oppenhein, A. B. (1996) J. Mol. Biol. 260, 484-491.
19. Banner, C. D. B., Moran, C. P., Jr., & Losick, R. (1983) J. Mol. Biol. 168, 351-365.
20. Frishy, D. & Zuber, P. (1991) J. Bacteriol. 173, 7557-7564.
21. Rao, L., Ross, W., Appleman, J. A., Gaal, T., Leirmo, S., Schlax, P. J., Record, M. T., Jr., & Gourse, R. L. (1994) J. Mol. Biol. 235, 1421-1435.
22. Ross, W., Gosink, K. K., Salomon, J., Igarashi, K., Zou, C., Ishihama, A., Severinov, K. & Gourse, R. L. (1993) Science 262, 1407-1413.
23. Blatter, E. E., Ross, W., Tang, H., Gourse, R. L. & Ebright, R. H. (1994) Cell 78, 889-896.
24. Jeon, Y. H., Negishi, T., Shirakawa, M., Yamazaki, T., Fujita, N., Ishihama, A. & Kyogoku, Y. (1995) Science 270, 1495-1497.
25. Gaal, T., Ross, W., Blatter, E. E., Tang, H., Jia, X., Krishnan, V. V., Assa-Munt, N., Ebright, R. H. & Gourse, R. L. (1996) Genes Dev. 10, 16-26.
26. Fredrick, K., Caramori, T., Chen, Y. F., Galizzi, A. & Helmann, J. D. (1995) Proc. Natl. Acad. Sci. USA 92, 2582-2586.
27. McMahan, S. & Burgess, R. R. (1994) Biochemistry 33, 12092-12099.
28. Tang, Y., Murakami, K., Ishihama, A. & deHaseth, P. L. (1996) J. Bacteriol. 178, 6945-6951.
29. Ring, B. Z., Yarnell, W. S. & Roberts, J. W. (1996) Cell 86, 485-493.
30. Reidharr-Olson, J., Bowie, J. U., Breyer, R. M., Hu, J. C., Knight, K. L., Lim, W. A., Mossing, M. C., Parsell, D. A., Shoemaker, K. R. & Sauer, R. T. (1991) in Methods in Enzymology, ed. Sauer, R. T. (Academic, San Diego), Vol. 208, pp. 564-586.
31. Chen, Y. & Helmann, J. D. (1995) J. Mol. Biol. 249, 743-753.
32. Aiyar, S. E., Juang, Y., Helmann, J. D. & deHaseth, P. L. (1994) Biochemistry 33, 11501-11506.
33. Tantin, D. & Carey, M. (1994) J. Biol. Chem. 269, 17397-17400.
34. Wedel, A. & Kustu, S. (1995) Genes Dev. 9, 2042-2052.
35. Chen, Y.-F. & Helmann, J. D. (1997) J. Mol. Biol. 267, 47-59.
36. Aiyar, S. E., Helmann, J. D. & deHaseth, P. L. (1994) J. Biol. Chem. 269, 13179-13184.
37. Hawley, D. K. & McClure, W. R. (1983) Nucleic Acids Res. 11, 2237-2255.
38. Helmann, J. D. (1995) Nucleic Acids Res. 23, 2351-2360.
39. Liu, J. & Turnbough, C. L., Jr. (1994) J. Bacteriol. 176, 2938-2945.
40. Mirel, D. B. & Chamberlin, M. J. (1989) J. Bacteriol. 171, 3095-3101.
41. Mirel, D. B., Lustre, V. M. & Chamberlin, M. J. (1992) J. Bacteriol. 174, 4197-4204.
42. Lazarevic, V., Margot, P., Soldo, B. & Karamata, D. (1992) J. Gen. Microbiol. 138, 1949-1961.
43. Chen, L. & Helmann, J. D. (1994) J. Bacteriol. 176, 3093-3101.
44. Fredrick, K. & Helmann, J. D. (1994) J. Bacteriol. 176, 2727-2735.
45. Mirel, D. B., Lauer, P. & Chamberlin, M. J. (1994) J. Bacteriol. 176, 4492-4500.
46. Perego, M., Glaser, P., Minutello, A., Strauch, M. A., Leopold, K. & Fischer, W. (1995) J. Biol. Chem. 270, 15598-15606.
47. Ogura, M. & Tanaka, T. (1996) J. Bacteriol. 178, 216-222.
48. Hanlon, D. W., Márques-Magaña, L., Carpenter, P. B., Chamberlin, M. J. & Ordal, G. W. (1992) J. Biol. Chem. 267, 12055-12060.
49. Hanlon, D. W., Rosario, M. L., Ordal, G. W., Venema, G. & Sinderen, D. V. (1994) Microbiology 140, 1847-1854.
50. Roberts, C. W. & Roberts, J. W. (1996) Cell 86, 495-501.
51. Severinova, E., Severinov, K., Fenyö, D., Marr, M., Brody, E. N., Roberts, J. W., Chait, B. T. & Darst, S. A. (1996) J. Mol. Biol. 263, 637-647.
52. Dombroski, A. J., Johnson, B. D., Lonetto, M. & Gross, C. (1996) Proc. Natl. Acad. Sci. USA 93, 8858-8862.
53. Juang, Y. & Helmann, J. D. (1995) Biochemistry 34, 8465-8473.
54. Mustaev, A., Kashlev, M., Zaychikovi, E., Grachevi, M. & Goldfarb, A. (1993) J. Biol. Chem. 268, 19185-19187.
55. Nudler, E., Goldfarb, A. & Kashlev, M. (1994) Science 265, 793-796.
56. Nudler, E., Kashlev, M., Nikiforov, V. & Goldfarb, A. (1995) Cell 81, 351-357.
57. Wang, D., Meier, T. I., Chan, C. L., Feng, G., Lee, D. N. & Landick, R. (1995) Cell 81, 341-350.
58. Chamberlin, M. J. (1995) in The Harvey Lectures (Wiley, New York), Vol. 88, pp. 1-21.
59. Wilson, H. R., Archer, C. D., Liu, J. & Turnbough, C. L., Jr. (1992) J. Bacteriol. 174, 514-524.
60. Qi, F. & Turnbough, C. L., Jr. (1995) J. Mol. Biol. 254, 552-565.