Brownian dynamics simulation of electrostatically interacting proteins

Molecular Physics

Volumn 100, Issue 17, 2002, Pages 2849-2855

  Ermakova, E ^a   Krushelnitsky, A G ^a   Fedotov, V D ^a  

^a KAZAN INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; BROWNIAN MOVEMENT; COMPUTER SIMULATION; ELECTROSTATICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

BROWNIAN DYNAMICS;

PROTEINS;

EID: 0037057201     PISSN: 00268976     EISSN: None     Source Type: Journal    
DOI: 10.1080/00268970210139868     Document Type: Article

References (35)

1. Krushelnitsky, A.G., and Fedotov, V.D., 1993, J. biomolec. Struct. Dynam., 11, 121.
2. Ermolina, I.V., Krushelnitsky, A.G., Ivoylov, I.N., Feldman, Yu.D., and Fedotov, V.D., 1993, Appl. magn. Reson., 5, 265.
3. Zwanzig, R., 1963, J. chem. Phys., 38, 2766.
4. Teixeira, P.I.C., Tavares, J.M., and da Gama, M.M.T., 2000, J. Phys. Condens Matter, 12, R411.
5. Camp, P.J., Shelley, J.C., and Patey, G.N., 2000, Phys. Rev. Lett., 84, 115.
6. Northrup, S.H., Boles, J.O., and Reynolds, J.C.L., 1987, J. phys. Chem., 91, 5991.
7. Van Gunsteren, W.F., and Berendsen, H.J.C., 1982, Molec. Phys., 45, 637.
8. Li, S.C., Hoyles, M., Kuyucak, S., and Chung, S.-H., 1998, Biophys. J., 74, 37.
9. Gabdoulline, R.R., and Wade, R.C., 1997, Biophys. J., 72, 1917.
10. Zhou, H.X., 2001, Biopolymers, 59, 427.
11. Klenin, K., Merlitz, H., and Langowski, J., 1998, Biophys. J., 74, 780.
12. Dwyer, J.D., and Bloomfield, A., 1993, Biophys. J., 65, 1810.
13. Ermolina, I.V., Ivoylov, I.N., and Fedotov, V.D., 1997, J. biomolec. Struct. Dynam., 15, 381.
14. Ermak, D.L., and McCammon, J.A., 1978, J. chem. Phys., 69, 1353.
15. Nesmelova, I.V., and Fedotov, V.D., 1997, Vysokomolec. Soed. Ser. A, 39, 521.
16. Allen, M.P., and Tildesley, D.J., 1987, Computer Simulation of Liquids (Oxford University Press).
17. Buck, M., and Karplus, M., 1999, J. Amer. chem. Soc., 121, 9645.
18. Tieleman, D.P., Sansom, M.S.P., and Berendsen, H.J.C., 1999, Biophys. J., 76, 40.
19. Sagui, C., and Darden, T.A., 1999, Ann. Rev. Biophys. Biomolec. Struct., 28, 155.
20. Norberg, J., and Nilsson, L., 2000, Biophys. J., 79, 1537.
21. Tokuyama, M., and Oppenheim, I., 1994, Phys. Rev. E, 50, 16.
22. Medina-Noyola, M., 1988, Phys. Rev. Lett., 60, 2705.
23. Moriguchi, I., 1997, J. chem. Phys., 106, 8624.
24. Banchio, A.J., Bergenholtz, J., and Nagele, G., 1999, Phys. Rev. Lett., 82, 1792.
25. Heyes, D.M., 1996, Molec. Phys., 87, 287.
26. Heranandez-Contreras, M., and Medina-Noyola, M., 1996, Phys. Rev. E, 54, 6573.
27. Lipari, G., and Szabo, A., 1982, J. Amer. chem. Soc., 104, 4546.
28. Fedotov, V.D., and Schneider, H., 1989, Structure and Dynamics of Bulk Polymers by NMR Methods (Berlin: Springer-Verlag).
29. Zhou, H.-X., and Bagchi, B., 1992, J. chem. Phys., 97, 3610.
30. Levesque, D., and Weis, J.J., 1994, Phys. Rev. E, 49, 5131.
31. Wei, D., and Patey, G.N., 1992, Phys. Rev. Lett., 68, 2043.
32. Wei, D., and Patey, G.N., 1992, Phys. Rev. A, 46, 7783.
33. Weis, J.J., and Levesque, D., 1993, Phys. Rev. E, 48, 3728.
34. Valitov, V.M., Ermolina, I.V., Zuev, Yu.F., and Feldman, Yu.D., 1987, Russ. J. phys. Chem., 61, 296.
35. Tanford, C., and Kirkwood, J.C., 1957, J. Amer. chem. Soc., 79, 5333.